Clone Sequence Records
BO04881.3prime Sequence
929 bp (819 high quality bases) assembled on 2005-12-02
> BO04881.3prime
ATGGTCTAGAAAGCTTGCTCCCAGGTGCATCAGGCTCGGATGGAAGTACC
CGGCCATGGCCCACTGGGCACCAGGTGCTCCTCGGCCCAGCGCCGCCATC
TTGATCTTCTCGATCTCGGCCTCCTGGAGACGCTTGGCCTTGGCCCTTCG
GTTCTGGAACCAGATCTTCACCTGCGTCTCCGTCAGCCGCAGCGAGGAGG
AGAACTCCGCCCGTTCGGCGATGCTCAGGTACTGCTTCTCCCGGAACTTC
TTCTCCAGCGAGAGCAGCTGCTGTGTTGTGAAGGGGGTGCGGGGCTTCCG
GTTGGGCTTGTGCTTCCGCAGGTTGCACTTGATCCGCGGCGGTTCGTTGG
CATCTCCACCGAATCCTGCTCCCGGAAACATGCCAGGCGGTCCGAAGGGC
GGCATTTGTCTGGTTCCTGGCCACGGAACTCCACCGCCCATTCCCGTCCA
GGCCACCGCCGCGGCGGCCAGTGCACTGAAGGGGGTCGGGCGGATGGGCA
CATGACCGGAGGCCAGGGCCGCCGGGGAAAGTATCGTGGATTGCATGTGA
GAGCCCGGCGGCGGACCGTGCGGCGATTCCAGCGACTTGCCGCTGCCGTC
GAGGCCGTCGGGCGTGGAGCGCGGCGAGTCGTCGGCGTTCATGTCCTCGA
TATCCACAATGGAGTCCTCCTCCTCGTCGTGATCGGCCTCGTGGTCCTGC
AGCATCTCCTCGTCGTACTCCAGCTCGGAGTCCGTGTGGCTGCCCAGCGG
CGAATGGCGTTCATTTTTGGCGGGAGTGGAGGCCACATTGCCCTGCGATC
CCAGTGCGGATCCCAGTGGCGTGGAGCTGGGCGTGGAACTCGTGGAGGCG
GGTGGCGAGTTGGCCCGGGCGTCCGCCTGCTGCTGCTGTTGGCGCAGCTG
GCGGCCATCGCCTGGTGCTGGGCATGTGC
BO04881.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1897-PA | 1548 | Dr-RA | 663..1545 | 901..19 | 4415 | 100 | Minus |
| CG5832-PA | 792 | Hmx-RA | 521..566 | 197..152 | 180 | 95.6 | Minus |
| CG1897-PA | 1548 | Dr-RA | 634..663 | 929..900 | 150 | 100 | Minus |
| CG7902-PA | 1149 | bap-RA | 634..677 | 192..149 | 145 | 93.1 | Minus |
| CG8254-PA | 1578 | exex-RA | 1438..1466 | 180..152 | 145 | 100 | Minus |
| CG10604-PA | 864 | bsh-RA | 517..548 | 180..149 | 135 | 96.8 | Minus |
| CG1046-PA | 1062 | zen-RA | 397..423 | 174..148 | 135 | 100 | Minus |
| CG10604-PB | 1290 | bsh-RB | 943..974 | 180..149 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:20:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dr-RA | 2552 | CG1897-RA | 884..1795 | 929..19 | 4535 | 99.9 | Minus |
| Hmx-RE | 3384 | CG43748-RE | 1942..1987 | 197..152 | 200 | 95.7 | Minus |
| Hmx-RD | 2691 | CG43748-RD | 1942..1987 | 197..152 | 200 | 95.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:20:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29557269..29557845 | 929..354 | 2835 | 99.8 | Minus |
| 3R | 32079331 | 3R | 29564151..29564487 | 355..19 | 1685 | 100 | Minus |
| 3R | 32079331 | 3R | 17567655..17567700 | 197..152 | 200 | 95.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:20:41 has no hits.
BO04881.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:12:09 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:30 Download gff for
BO04881.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1897-PA | 634..1548 | 15..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:08:14 Download gff for
BO04881.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dr-RA | 884..1799 | 14..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:48 Download gff for
BO04881.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dr-RA | 884..1799 | 14..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:48 Download gff for
BO04881.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29557269..29557845 | 354..929 | 99 | -> | Minus |
| 3R | 29564153..29564491 | 14..353 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:08:14 Download gff for
BO04881.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25382991..25383567 | 354..929 | 99 | -> | Minus |
| arm_3R | 25389875..25390213 | 14..353 | 99 | | Minus |
BO04881.5prime Sequence
917 bp (784 high quality bases) assembled on 2005-11-29
> BO04881.5prime
GAAGTTATCAGTCGACATGTTAAAGCTCAGCCCAGCGAGCATGACAGTTA
CAGGTCTGCGCCAGACGATGACCAGTCCCACGGTGCCGCCGAGCAGTAAC
ACTCCCGCGGGTAACCTCATCATCACCAGCAGCAGTAGCAACAGCGGCAG
CAACAGCGGCAGCAACATGAGCAGCGGCAACATGACCAGCAGCAACCTGA
CCAACCTGAGTCCTAGCCACCCGGCTGGCCTGAATGCCCTGGCCAGTCCC
ACCTCGCCGTCGGCACTGCTGCTGGCCCATCAGCAGCATCTGCTGCAGCA
GCACCAGCAACACCAGCAGCAGCAGCAACAGCAGCAGCAGGCGGCGGCGC
TCCAGCTGGCCGCAGTGCATCCGCCGGCCCACCATCTGCACAAGACCACC
TCCCGACTGAGCAACTTTAGTGTGGCCTCTCTCCTGGCGGACACGAGGCC
CAGAACGCCACCCAACCAGGCGGCGGATGGACCCCAGAACCTGACCAGTT
CGGCGGCCACCTCGCCCATCTCCCAGGCCAGCAGCACGCCGCCGCCTCCG
CCGGCCAGTGCGGCCGCCCAAGTTCCCGCCAACACCTTCCATCCCGCCGC
CGTCGCGCACCACGCCCACTTGCTGCAGGCCGCCCACGCGGCTGCGGCGG
CACATGCCCAGCACCAGGCGATGGCCGCCCAGCTGCGCCAACAGCAGCAG
CAGGCGGACGCCCGGGCCAACTCGCCACCCGCCTCCACGAGTTCCACGCC
CAGCTCCACGCCACTGGGATCCGCACTGGGATCGCAGGGCAATGTGGCCT
CCACTCCCGCCAAAATGAACGCCATTCGCCGCTGGGCAGCCACACGGACT
CCGAGCTGGAGTACGACGAGGAGATGCTGCAGGACCACGAGGCCGATCAC
GACGAGGAGGAGGACTC
BO04881.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1897-PA | 1548 | Dr-RA | 1..799 | 17..815 | 3995 | 100 | Plus |
| CG1897-PA | 1548 | Dr-RA | 797..902 | 812..917 | 530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dr-RA | 2552 | CG1897-RA | 251..1152 | 17..917 | 4485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29556636..29557537 | 17..917 | 4460 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:40:54 has no hits.
BO04881.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:12:10 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:31 Download gff for
BO04881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1897-PA | 1..902 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:55 Download gff for
BO04881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dr-RA | 244..1152 | 10..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:45 Download gff for
BO04881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dr-RA | 244..1152 | 10..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:45 Download gff for
BO04881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29556629..29557537 | 10..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:55 Download gff for
BO04881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25382351..25383259 | 10..917 | 99 | | Plus |
BO04881.complete Sequence
1579 bp (1579 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629914
> BO04881.complete
GAAGTTATCAGTCGACATGTTAAAGCTCAGCCCAGCGAGCATGACAGTTA
CAGGTCTGCGCCAGACGATGACCAGTCCCACGGTGCCGCCGAGCAGTAAC
ACTCCCGCGGGTAACCTCATCATCACCAGCAGCAGTAGCAACAGCGGCAG
CAACAGCGGCAGCAACATGAGCAGCGGCAACATGACCAGCAGCAACCTGA
CCAACCTGAGTCCTAGCCACCCGGCTGGCCTGAATGCCCTGGCCAGTCCC
ACCTCGCCGTCGGCACTGCTGCTGGCCCATCAGCAGCATCTGCTGCAGCA
GCACCAGCAACACCAGCAGCAGCAGCAACAGCAGCAGCAGGCGGCGGCGC
TCCAGCTGGCCGCAGTGCATCCGCCGGCCCACCATCTGCACAAGACCACC
TCCCGACTGAGCAACTTTAGTGTGGCCTCTCTCCTGGCGGACACGAGGCC
CAGAACGCCACCCAACCAGGCGGCGGATGGACCCCAGAACCTGACCAGTT
CGGCGGCCACCTCGCCCATCTCCCAGGCCAGCAGCACGCCGCCGCCTCCG
CCGGCCAGTGCGGCCGCCCAAGTTCCCGCCAACACCTTCCATCCCGCCGC
CGTCGCGCACCACGCCCACTTGCTGCAGGCCGCCCACGCGGCTGCGGCGG
CACATGCCCAGCACCAGGCGATGGCCGCCCAGCTGCGCCAACAGCAGCAG
CAGGCGGACGCCCGGGCCAACTCGCCACCCGCCTCCACGAGTTCCACGCC
CAGCTCCACGCCACTGGGATCCGCACTGGGATCGCAGGGCAATGTGGCCT
CCACTCCCGCCAAAAATGAACGCCATTCGCCGCTGGGCAGCCACACGGAC
TCCGAGCTGGAGTACGACGAGGAGATGCTGCAGGACCACGAGGCCGATCA
CGACGAGGAGGAGGACTCCATTGTGGATATCGAGGACATGAACGCCGACG
ACTCGCCGCGCTCCACGCCCGACGGCCTCGACGGCAGCGGCAAGTCGCTG
GAATCGCCGCACGGTCCGCCGCCGGGCTCTCACATGCAATCCACGATACT
TTCCCCGGCGGCCCTGGCCTCCGGTCATGTGCCCATCCGCCCGACCCCCT
TCAGTGCACTGGCCGCCGCGGCGGTGGCCTGGACGGGAATGGGCGGTGGA
GTTCCGTGGCCAGGAACCAGACAAATGCCGCCCTTCGGACCGCCTGGCAT
GTTTCCGGGAGCAGGATTCGGTGGAGATGCCAACGAACCGCCGCGGATCA
AGTGCAACCTGCGGAAGCACAAGCCCAACCGGAAGCCCCGCACCCCCTTC
ACAACACAGCAGCTGCTCTCGCTGGAGAAGAAGTTCCGGGAGAAGCAGTA
CCTGAGCATCGCCGAACGGGCGGAGTTCTCCTCCTCGCTGCGGCTGACGG
AGACGCAGGTGAAGATCTGGTTCCAGAACCGAAGGGCCAAGGCCAAGCGT
CTCCAGGAGGCCGAGATCGAGAAGATCAAGATGGCGGCGCTGGGCCGAGG
AGCACCTGGTGCCCAGTGGGCCATGGCCGGGTACTTCCATCCGAGCCTGA
TGCACCTGGGAGCAAGCTTTCTAGACCAT
BO04881.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:13:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dr-RA | 1548 | CG1897-PA | 1..1545 | 17..1561 | 7725 | 100 | Plus |
| Hmx-RE | 1779 | CG43748-PE | 1508..1553 | 1383..1428 | 200 | 95.7 | Plus |
| Hmx-RD | 2157 | CG43748-PD | 1508..1553 | 1383..1428 | 200 | 95.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dr-RA | 2552 | CG1897-RA | 251..1795 | 17..1561 | 7725 | 100 | Plus |
| Hmx-RE | 3384 | CG43748-RE | 1942..1987 | 1383..1428 | 200 | 95.7 | Plus |
| Hmx-RD | 2691 | CG43748-RD | 1942..1987 | 1383..1428 | 200 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29556636..29557845 | 17..1226 | 6050 | 100 | Plus |
| 3R | 32079331 | 3R | 29564151..29564487 | 1225..1561 | 1685 | 100 | Plus |
| 3R | 32079331 | 3R | 17567655..17567700 | 1383..1428 | 200 | 95.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:13:28 has no hits.
BO04881.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:31 Download gff for
BO04881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dr-RA | 1..1548 | 17..1565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:03 Download gff for
BO04881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dr-RA | 243..1798 | 10..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:05 Download gff for
BO04881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dr-RA | 256..1795 | 22..1563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:31 Download gff for
BO04881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dr-RA | 243..1798 | 10..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:31 Download gff for
BO04881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dr-RA | 256..1795 | 22..1563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:31 Download gff for
BO04881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29556641..29557845 | 22..1226 | 100 | -> | Plus |
| 3R | 29564153..29564487 | 1227..1563 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:05 Download gff for
BO04881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25382363..25383567 | 22..1226 | 100 | -> | Plus |
| arm_3R | 25389875..25390209 | 1227..1563 | 99 | | Plus |
BO04881.pep Sequence
Translation from 16 to 1579
> BO04881.pep
MLKLSPASMTVTGLRQTMTSPTVPPSSNTPAGNLIITSSSSNSGSNSGSN
MSSGNMTSSNLTNLSPSHPAGLNALASPTSPSALLLAHQQHLLQQHQQHQ
QQQQQQQQAAALQLAAVHPPAHHLHKTTSRLSNFSVASLLADTRPRTPPN
QAADGPQNLTSSAATSPISQASSTPPPPPASAAAQVPANTFHPAAVAHHA
HLLQAAHAAAAAHAQHQAMAAQLRQQQQQADARANSPPASTSSTPSSTPL
GSALGSQGNVASTPAKNERHSPLGSHTDSELEYDEEMLQDHEADHDEEED
SIVDIEDMNADDSPRSTPDGLDGSGKSLESPHGPPPGSHMQSTILSPAAL
ASGHVPIRPTPFSALAAAAVAWTGMGGGVPWPGTRQMPPFGPPGMFPGAG
FGGDANEPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAE
RAEFSSSLRLTETQVKIWFQNRRAKAKRLQEAEIEKIKMAALGRGAPGAQ
WAMAGYFHPSLMHLGASFLDH
BO04881.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dr-PA | 515 | CG1897-PA | 1..515 | 1..515 | 2673 | 100 | Plus |
| CG32532-PD | 688 | CG32532-PD | 127..594 | 47..506 | 214 | 24.2 | Plus |
| Dbx-PC | 741 | CG42234-PC | 144..497 | 124..484 | 207 | 26 | Plus |
| Dll-PB | 322 | CG3629-PB | 1..217 | 308..517 | 202 | 31.6 | Plus |
| Dll-PA | 327 | CG3629-PA | 1..217 | 308..517 | 202 | 31.6 | Plus |
