Clone Sequence Records
BO04883.3prime Sequence
874 bp (873 high quality bases) assembled on 2005-12-02
> BO04883.3prime
ATGGTCTAGAAAGCTTGCGATCACCATCTGGTCGCGCGTTGTTAGCTTCT
GATGGCCAGTGGCCACCACCAAAGACCTCCGCATGCGGTTCCGCTGCAGC
GTGGAATTCCGTTCCCTCACCGATTGCCGCAGATGCTGGCGACGTGCTCC
TCCGGGTCCAGAACCAACGACTCCACCTCCGCTTGCCTCCCTCTCGGCTG
CATTCATGGCCGCCAGCAGCTCGAAGGCTTGTTTCTTCTGCTCCTTTGTC
CAGAGATTGGCCACTGGTGGAACTTCTGCCGGCTGTTCCTGCGTGATCGG
TGGCTTGACGGCCAAAGGAGGTCGCTGCACGCGAGTTGCAGCTGCTTGGG
CTACCTGGTTGACCGATGGCAAGGATTTGGATGTCGCCTTGGATCCGCGA
CTCAACCCGAAAAGCGAGAGTATAGATTTCCTGCGGGTGGAGGAGGCCTG
GCTGTCACCGGAATCATTGCTGGATACGCTCATTTGCATGGGAACGCCAG
TGGGCGGAGGATTCACTGCCGGTTTAACCGCCGGTGGGGGCATATTCTCG
ATACCATAGGTAACAAACTTTTGGGGCGACTTGAAGGTAACCTTACGCAG
AGTATTTAGCGATTTTGGTGCCGGAAGTGTGGCTAAATTGAGTTTAGCCA
CCGTGGGCGACGTCTCGTTGAGTTCGATAGTGCAGTAGGTGTCATCATGG
TGCGATTTCGCTGGCTTCCTAGGAGGAATGGGCGGAGCTATCGGCTGTCT
GCAACTACAAGTGTGTTTCTCCTGCTGAAGAAGTTTTTCCTGCATCTGCC
GCTCCAGCGTTTGCACGCGCTGTTCGGCCAGCTGTAACTCCTGCTCCCGG
GTCTGCAGCTCTTCGAGCTTCTGC
BO04883.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17256-PA | 2208 | Nek2-RA | 1350..2205 | 874..19 | 4280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nek2-RA | 2581 | CG17256-RA | 1497..2352 | 874..19 | 4280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7889295..7890150 | 19..874 | 4280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:35:20 has no hits.
BO04883.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:12 Download gff for
BO04883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-PA | 1350..2208 | 16..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:35 Download gff for
BO04883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17256-PA | 1350..2208 | 16..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:43:29 Download gff for
BO04883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-RA | 1497..2352 | 19..874 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:55:28 Download gff for
BO04883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-RA | 1497..2352 | 19..874 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:55:28 Download gff for
BO04883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7889295..7890150 | 19..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:43:29 Download gff for
BO04883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7783328..7784183 | 19..874 | 100 | | Plus |
BO04883.5prime Sequence
903 bp (856 high quality bases) assembled on 2005-12-02
> BO04883.5prime
GAAGTTATCAGTCGACATGAGCGGAGAGGAATCTGCCGGCATGGACTTTT
CGCAAAAGACCCTGCAGGATTACGAGGTTTTGGCCGTGATGGGGAATGGA
TCCTTCGGCACCTGCTACAAGGTGCGCGACAAAAGCACCGGTGAATTGTT
CGCCTGGAAGGGAATGAACTACGATGAACTGGACGAGGCCAAGTGCGACG
CTTTGGTTTCGGAAATCAGTGTTCTGCGGCAGCTCCAGCATCCTAACATT
GTGCAATACTACCATCATCTGGTGAACCGAGAGGCCAAGTCGGTGTACAT
TGTTATGGAGTGCTGTGCCGGCGGCGATCTCGCCCAGATTGTCCAGCGAG
CGAGATCCCAGAGGCAGCGGTTTGAGGAGCCCTACATCTGGCGGGTGCTC
TTCCAACTTTGCCGGGCGCTTCAGGTGTGCCACAACAAAATCCCCAACGG
AACCATCTTGCATCGCGATATCAAGCCAGCAAATATTTTCCTGGATGCGG
CCGGGAATGCCAAACTGGGAGATTTCGGTCTGGCCAGAATGCTGCGACGA
GATCAGAGCTTTGCCGCCTCCTTTGTGGGCACTCCGCACTACATGAGTCC
GGAGTTGGTGAAGGGCAGGAAATACGATCGGAAGAGCGATGTCTGGGCCG
TTGGTTGTTTGGTATACGAGATGTGTGCCCTAAGACCGCCGTTTCGCGGC
AGAGCCTTTGACCAGTTGTCCGAGAAGATCGCCCAGGGTGAGTTCAGTCG
GATTCCGGCAATCTATAGTACTGATCTGCAGGAGATCATCGCCTTCATGC
TGGCAGTGGATCATGAACAGCGTCCTGGCATCGAGGTTATCATTCGGCAT
CCTCTGGTGGTGCGTAATATTAGCGAGTTGGATGGCAAGTTCCCAATTCT
AGT
BO04883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17256-PA | 2208 | Nek2-RA | 1..887 | 17..903 | 4435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:49:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nek2-RA | 2581 | CG17256-RA | 148..1034 | 17..903 | 4435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7890613..7891499 | 903..17 | 4435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:49:16 has no hits.
BO04883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:13 Download gff for
BO04883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-PA | 1..887 | 17..903 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:37 Download gff for
BO04883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17256-PA | 1..887 | 17..903 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:14:02 Download gff for
BO04883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-RA | 138..1034 | 5..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:20:24 Download gff for
BO04883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-RA | 138..1034 | 5..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:20:24 Download gff for
BO04883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7890613..7891509 | 5..903 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:14:02 Download gff for
BO04883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7784646..7785542 | 5..903 | 99 | | Minus |
BO04883.complete Sequence
2239 bp assembled on 2008-08-14
GenBank Submission: FJ629916
> BO04883.complete
GAAGTTATCAGTCGACATGAGCGGAGAGGAATCTGCCGGCATGGACTTTT
CGCAAAAGACCCTGCAGGATTACGAGGTTTTGGCCGTGATGGGGAATGGA
TCCTTCGGCACCTGCTACAAGGTGCGCGACAAAAGCACCGGTGAATTGTT
CGCCTGGAAGGGAATGAACTACGATGAACTGGACGAGGCCAAGTGCGACG
CTTTGGTTTCGGAAATCAGTGTTCTGCGGCAGCTCCAGCATCCTAACATT
GTGCAATACTACCATCATCTGGTGAACCGAGAGGCCAAGTCGGTGTACAT
TGTTATGGAGTGCTGTGCCGGCGGCGATCTCGCCCAGATTGTCCAGCGAG
CGAGATCCCAGAGGCAGCGGTTTGAGGAGCCCTACATCTGGCGGGTGCTC
TTCCAACTTTGCCGGGCGCTTCAGGTGTGCCACAACAAAATCCCCAACGG
AACCATCTTGCATCGCGATATCAAGCCAGCAAATATTTTCCTGGATGCGG
CCGGGAATGCCAAACTGGGAGATTTCGGTCTGGCCAGAATGCTGCGACGA
GATCAGAGCTTTGCCGCCTCCTTTGTGGGCACTCCGCACTACATGAGTCC
GGAGTTGGTGAAGGGCAGGAAATACGATCGGAAGAGCGATGTCTGGGCCG
TTGGTTGTTTGGTATACGAGATGTGTGCCCTAAGACCGCCGTTTCGCGGC
AGAGCCTTTGACCAGTTGTCCGAGAAGATCGCCCAGGGTGAGTTCAGTCG
GATTCCGGCAATCTATAGTACTGATCTGCAGGAGATCATCGCCTTCATGC
TGGCAGTGGATCATGAACAGCGTCCTGGCATCGAGGTTATCATTCGGCAT
CCTCTGGTGGTGCGTAATATTAGCGAGTTGGATGGCAAGTTCCCAATTCT
AGTTGATTCTGGAGAGGATTTCTACACACTGCCTTCGGGTGCCAGGCTTT
TCGAGGACGAAGAGGAAGATGGAGTTCATCCAGAGCTATCGAGCACCATG
TTTACGGAACAGTACAGCTTCAATGAAGGCTATGGGCAAAGGAGACTCAG
CGTTACTGGTGTGTTTACTCCAGATTTGCGAAGTGAACTCTTCTACTCCG
CCAAGCGCAAAATCTTTCCTGCCAAGAAACTACAGCTGTCGGATCCCTCT
CTTTATGAAAGTATAAGGAGAGAGGAGCGAGCGGAGGAGAGGCAGGTGGA
ACTGGCGGAAGAGCGGCGCCGTAAAAAGGATCAGGAGCAGCAGAAAAGGG
ATCAGGAGCTTCTAAAGGAGGCCCCTAGCAGTCCTCGTGCTCTTACCCAA
AACATATTCGATGAAGTACTAAAGACCCGTCTCCACGCCATTCGTGCCCA
AGAATCCCTGTTGCAGCAGAAGCTCGAAGAGCTGCAGACCCGGGAGCAGG
AGTTACAGCTGGCCGAACAGCGCGTGCAAACGCTGGAGCGGCAGATGCAG
GAAAAACTTCTTCAGCAGGAGAAACACACTTGTAGTTGCAGACAGCCGAT
AGCTCCGCCCATTCCTCCTAGGAAGCCAGCGAAATCGCACCATGATGACA
CCTACTGCACTATCGAACTCAACGAGACGTCGCCCACGGTGGCTAAACTC
AATTTAGCCACACTTCCGGCACCAAAATCGCTAAATACTCTGCGTAAGGT
TACCTTCAAGTCGCCCCAAAAGTTTGTTACCTATGGTATCGAGAATATGC
CCCCACCGGCGGTTAAACCGGCAGTGAATCCTCCGCCCACTGGCGTTCCC
ATGCAAATGAGCGTATCCAGCAATGATTCCGGTGACAGCCAGGCCTCCTC
CACCCGCAGGAAATCTATACTCTCGCTTTTCGGGTTGAGTCGCGGATCCA
AGGCGACATCCAAATCCTTGCCATCGGTCAACCAGGTAGCCCAAGCAGCT
GCAACTCGCGTGCAGCGACCTCCTTTGGCCGTCAAGCCACCGATCACGCA
GGAACAGCCGGCAGAAGTTCCACCAGTGGCCAATCTCTGGACAAAGGAGC
AGAAGAAACAAGCCTTCGAGCTGCTGGCGGCCATGAATGCAGCCGAGAGG
GAGGCAAGCGGAGGTGGAGTCGTTGGTTCTGGACCCGGAGGAGCACGTCG
CCAGCATCTGCGGCAATCGGTGAGGGAACGGAATTCCACGCTGCAGCGGA
ACCGCATGCGGAGGTCTTTGGTGGTGGCCACTGGCCATCAGAAGCTAACA
ACGCGCGACCAGATGGTGATCGCAAGCTTTCTAGACCAT
BO04883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:59:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nek2-RA | 2208 | CG17256-PA | 1..2205 | 17..2221 | 11025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nek2-RA | 2581 | CG17256-RA | 148..2352 | 17..2221 | 11025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7889295..7891499 | 2221..17 | 11025 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:59:49 has no hits.
BO04883.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:10 Download gff for
BO04883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-RA | 64..2278 | 5..2221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:12 Download gff for
BO04883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-RA | 148..2352 | 17..2223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:02 Download gff for
BO04883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-RA | 74..2278 | 17..2223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:57 Download gff for
BO04883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-RA | 148..2352 | 17..2223 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:57 Download gff for
BO04883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7889292..7891499 | 17..2223 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:12 Download gff for
BO04883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7783325..7785532 | 17..2223 | 99 | | Minus |
BO04883.pep Sequence
Translation from 16 to 2239
> BO04883.pep
MSGEESAGMDFSQKTLQDYEVLAVMGNGSFGTCYKVRDKSTGELFAWKGM
NYDELDEAKCDALVSEISVLRQLQHPNIVQYYHHLVNREAKSVYIVMECC
AGGDLAQIVQRARSQRQRFEEPYIWRVLFQLCRALQVCHNKIPNGTILHR
DIKPANIFLDAAGNAKLGDFGLARMLRRDQSFAASFVGTPHYMSPELVKG
RKYDRKSDVWAVGCLVYEMCALRPPFRGRAFDQLSEKIAQGEFSRIPAIY
STDLQEIIAFMLAVDHEQRPGIEVIIRHPLVVRNISELDGKFPILVDSGE
DFYTLPSGARLFEDEEEDGVHPELSSTMFTEQYSFNEGYGQRRLSVTGVF
TPDLRSELFYSAKRKIFPAKKLQLSDPSLYESIRREERAEERQVELAEER
RRKKDQEQQKRDQELLKEAPSSPRALTQNIFDEVLKTRLHAIRAQESLLQ
QKLEELQTREQELQLAEQRVQTLERQMQEKLLQQEKHTCSCRQPIAPPIP
PRKPAKSHHDDTYCTIELNETSPTVAKLNLATLPAPKSLNTLRKVTFKSP
QKFVTYGIENMPPPAVKPAVNPPPTGVPMQMSVSSNDSGDSQASSTRRKS
ILSLFGLSRGSKATSKSLPSVNQVAQAAATRVQRPPLAVKPPITQEQPAE
VPPVANLWTKEQKKQAFELLAAMNAAEREASGGGVVGSGPGGARRQHLRQ
SVRERNSTLQRNRMRRSLVVATGHQKLTTRDQMVIASFLDH
BO04883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nek2-PA | 735 | CG17256-PA | 1..735 | 1..735 | 3776 | 100 | Plus |
| niki-PA | 841 | CG10951-PA | 87..370 | 1..290 | 463 | 34.6 | Plus |
| polo-PB | 576 | CG12306-PB | 17..268 | 9..272 | 334 | 27.9 | Plus |
| polo-PA | 576 | CG12306-PA | 17..268 | 9..272 | 334 | 27.9 | Plus |
| Pka-C1-PD | 353 | CG4379-PD | 43..285 | 16..271 | 320 | 30.7 | Plus |
