Clone Sequence Records
BO04884.3prime Sequence
928 bp (881 high quality bases) assembled on 2005-12-02
> BO04884.3prime
ATGGTCTAGAAAGCTTGCAATGCGCAAATGGAAATTATGGCCATTGACGA
CGCACGATCGGCCCGGGACGCTGTACGTGGGCAGCGGCGAATGCACAAAC
TTTGGCACCCTCTGGTTGGTTGCCATGTAGCCGACACAGAACGACTGCGT
CGTGTGGCTCCACATCACCTCGCCGCTGCTCTGGCCCGGATAATAGAGTA
GCGTCAGAGCTCCAGCGTACAGATCCTGCTGTCGGGGCAGCAGCGGGGAG
TCCAGGAACTTTTGCTTGAACGTCTTGTGAAGACTGGTCACCGCACAATC
ACTGCTAAATGCCCCATGGCAGATCTCTCGGGCCAGCAGCGTTTTCATCA
GGTACTCGCCGTTTCCGGTTGTGCAGGTGGCTATGGCCAGTTCGTCCGTA
TCGGTGGCCCAACAGCCGGCACCATAAGTAGCCGCCTGCCCCACTCTGCC
CGGAACTTTGAGCAGTATGCCACCGGAGCTACATCCAGCTGCTGTGTTCC
CTGCCCCATCAACACATACCGCTCCCACTGTGTCCAAAGCAGCGGCAAGT
TCCACCTCGTTTCCTGGTTCCGGCACTTGTACGGATTCCTCGGACGTTGC
CTTGCCCAATCTGCTGTTGACCACGAGGTCGTACTTGCTTTTGTAGTGAT
TAAACTGGAACTTGGCCTTAGATGAGATCAGTACGCCGGGCTCCACCATG
GAGCAACCCACCTCGTCGGCATAGTGTTCCGCTCCAGTGCCGGCGAGGAT
CATCGGTGGAATGCGCTCCAGAAGCTGCGGACTGGACTGGGCATCGCAGA
TGCGTCTCGCCAACTGTATGGGGTTCTTCACCCGACTAACGTTCGTGCAG
GCGCCAAAGTTAAGCGTTGAGCCATCCATTATAGCCGCATCGCACTGCAC
AGAGCCGTCCATGCAGAGATTTGGAGCA
BO04884.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5241-PA | 1098 | CG5241-RA | 193..1095 | 921..19 | 4515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taspase1-RB | 2159 | CG5241-RB | 273..1180 | 927..19 | 4520 | 99.9 | Minus |
| Taspase1-RA | 1503 | CG5241-RA | 273..1180 | 927..19 | 4520 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16086351..16087172 | 100..921 | 4110 | 100 | Plus |
| 3L | 28110227 | 3L | 16086200..16086282 | 19..101 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:41:03 has no hits.
BO04884.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:14 Download gff for
BO04884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5241-PA | 188..1098 | 15..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:38 Download gff for
BO04884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5241-PA | 188..1098 | 15..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:58 Download gff for
BO04884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taspase1-RA | 273..1183 | 15..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:46 Download gff for
BO04884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taspase1-RA | 273..1183 | 15..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:46 Download gff for
BO04884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16086196..16086280 | 15..99 | 97 | <- | Plus |
| 3L | 16086351..16087177 | 100..927 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:58 Download gff for
BO04884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16079296..16079380 | 15..99 | 97 | <- | Plus |
| arm_3L | 16079451..16080277 | 100..927 | 99 | | Plus |
BO04884.5prime Sequence
874 bp (782 high quality bases) assembled on 2005-11-29
> BO04884.5prime
GAAGTTATCAGTCGACATGGCCGGCTTCGTCGCGGTGCACACGGGGGCTG
GGAACTGCATCGACGAGACGAAGTACCAGCGGGTGATTAAGGAGGCCTGC
CTGCGCGCCACGGAGATCCTTCGCAACGGCGGATCCGCCGTCGATGCCTG
CGAGGCGGCCATTGTGCGGCTGGAGAACTGCGGCTACACAAACGCCGGCT
ATGGCTCCAATCTCTGCATGGACGGCTCTGTGCAGTGCGATGCGGCTATA
ATGGATGGCTCAACGCTTAACTTTGGCGCCTGCACGAACGTTAGTCGGGT
GAAGAACCCCATACAGTTGGCGAGACGCATCTGCGATGCCCAGTCCAGTC
CGCAGCTTCTGGAGCGCATTCCACCGATGATCCTCGCCGGCACTGGAGCG
GAACACTATGCCGACGAGGTGGGTTGCTCCATGGTGGAGCCCGGCGTACT
GATCTCATCTAAGGCCAAGTTCCAGTTTAATCACTACAAAAGCAAGTACG
ACCTCGTGGTCAACAGCAGATTGGGCAAGGCAACGTCCGAGGAATCCGTA
CAAGTGCCGGAACCAGGAAACGAGGTGGAACTTGCCGCTGCTTTGGACAC
AGTGGGAGCGGTATGTGTTGATGGGGCAGGGAACACAGCAGCTGGATGTA
GCTCCGGTGGCATACTGCTCAAAGTTCCGGGCAGAGTGGGGCAGGCGGCT
ACTTATGGTGCCGGCTGTTGGGCCACCGATACGGACGAACTGGCCATAGC
CACCTGCACAACCGGAAACGGCGAGTACCTGATGAAAACGCTGCTGGCCC
GAGAGATCTGCCATGGGGCATTTAGCAGTGATTGTGCGGTGACCAGTCTT
CACAAGACGTTCAAGCAAAAGTTC
BO04884.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5241-PA | 1098 | CG5241-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taspase1-RB | 2159 | CG5241-RB | 84..943 | 15..874 | 4300 | 100 | Plus |
| Taspase1-RA | 1503 | CG5241-RA | 84..943 | 15..874 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16086507..16087337 | 874..44 | 4155 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:27:54 has no hits.
BO04884.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:15 Download gff for
BO04884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5241-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:40 Download gff for
BO04884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5241-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:43:28 Download gff for
BO04884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taspase1-RA | 78..943 | 7..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:29 Download gff for
BO04884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taspase1-RA | 78..943 | 7..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:29 Download gff for
BO04884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16086507..16087336 | 45..874 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:43:28 Download gff for
BO04884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16079607..16080436 | 45..874 | 100 | <- | Minus |
BO04884.complete Sequence
1129 bp (1129 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629917
> BO04884.complete
GAAGTTATCAGTCGACATGGCCGGCTTCGTCGCGGTGCACACGGGGGCTG
GGAACTGCATCGACGAGACGAAGTACCAGCGGGTGATTAAGGAGGCCTGC
CTGCGCGCCACGGAGATCCTTCGCAACGGCGGATCCGCCGTCGATGCCTG
CGAGGCGGCCATTGTGCGGCTGGAGAACTGCGGCTACACAAACGCCGGCT
ATGGCTCCAATCTCTGCATGGACGGCTCTGTGCAGTGCGATGCGGCTATA
ATGGATGGCTCAACGCTTAACTTTGGCGCCTGCACGAACGTTAGTCGGGT
GAAGAACCCCATACAGTTGGCGAGACGCATCTGCGATGCCCAGTCCAGTC
CGCAGCTTCTGGAGCGCATTCCACCGATGATCCTCGCCGGCACTGGAGCG
GAACACTATGCCGACGAGGTGGGTTGCTCCATGGTGGAGCCCGGCGTACT
GATCTCATCTAAGGCCAAGTTCCAGTTTAATCACTACAAAAGCAAGTACG
ACCTCGTGGTCAACAGCAGATTGGGCAAGGCAACGTCCGAGGAATCCGTA
CAAGTGCCGGAACCAGGAAACGAGGTGGAACTTGCCGCTGCTTTGGACAC
AGTGGGAGCGGTATGTGTTGATGGGGCAGGGAACACAGCAGCTGGATGTA
GCTCCGGTGGCATACTGCTCAAAGTTCCGGGCAGAGTGGGGCAGGCGGCT
ACTTATGGTGCCGGCTGTTGGGCCACCGATACGGACGAACTGGCCATAGC
CACCTGCACAACCGGAAACGGCGAGTACCTGATGAAAACGCTGCTGGCCC
GAGAGATCTGCCATGGGGCATTTAGCAGTGATTGTGCGGTGACCAGTCTT
CACAAGACGTTCAAGCAAAAGTTCCTGGACTCCCCGCTGCTGCCCCGACA
GCAGGATCTGTACGCTGGAGCTCTGACGCTACTCTATTATCCGGGCCAGA
GCAGCGGCGAGGTGATGTGGAGCCACACGACGCAGTCGTTCTGTGTCGGC
TACATGGCAACCAACCAGAGGGTGCCAAAGTTTGTGCATTCGCCGCTGCC
CACGTACAGCGTCCCGGGCCGATCGTGCGTCGTCAATGGCCATAATTTCC
ATTTGCGCATTGCAAGCTTTCTAGACCAT
BO04884.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taspase1-RB | 1098 | CG5241-PB | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| Taspase1-RA | 1098 | CG5241-PA | 1..1095 | 17..1111 | 5475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taspase1-RB | 2159 | CG5241-RB | 84..1180 | 15..1111 | 5485 | 100 | Plus |
| Taspase1-RA | 1503 | CG5241-RA | 84..1180 | 15..1111 | 5485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16086351..16087337 | 1030..44 | 4935 | 100 | Minus |
| 3L | 28110227 | 3L | 16086200..16086282 | 1111..1029 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:36:57 has no hits.
BO04884.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:32 Download gff for
BO04884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5241-RA | 1..1098 | 17..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:05 Download gff for
BO04884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taspase1-RA | 63..1168 | 7..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:06 Download gff for
BO04884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taspase1-RA | 86..1180 | 17..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:32 Download gff for
BO04884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5241-RA | 63..1168 | 7..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:57 Download gff for
BO04884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taspase1-RA | 86..1180 | 17..1113 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:57 Download gff for
BO04884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16086198..16086280 | 1031..1113 | 97 | <- | Minus |
| 3L | 16086351..16087336 | 45..1030 | 100 | <- | Minus |
| 3L | 16087413..16087440 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:06 Download gff for
BO04884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16079298..16079380 | 1031..1113 | 97 | <- | Minus |
| arm_3L | 16079451..16080436 | 45..1030 | 100 | <- | Minus |
| arm_3L | 16080513..16080540 | 17..44 | 100 | | Minus |
BO04884.pep Sequence
Translation from 16 to 1129
> BO04884.pep
MAGFVAVHTGAGNCIDETKYQRVIKEACLRATEILRNGGSAVDACEAAIV
RLENCGYTNAGYGSNLCMDGSVQCDAAIMDGSTLNFGACTNVSRVKNPIQ
LARRICDAQSSPQLLERIPPMILAGTGAEHYADEVGCSMVEPGVLISSKA
KFQFNHYKSKYDLVVNSRLGKATSEESVQVPEPGNEVELAAALDTVGAVC
VDGAGNTAAGCSSGGILLKVPGRVGQAATYGAGCWATDTDELAIATCTTG
NGEYLMKTLLAREICHGAFSSDCAVTSLHKTFKQKFLDSPLLPRQQDLYA
GALTLLYYPGQSSGEVMWSHTTQSFCVGYMATNQRVPKFVHSPLPTYSVP
GRSCVVNGHNFHLRIASFLDH
BO04884.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taspase1-PB | 365 | CG5241-PB | 1..365 | 1..365 | 1926 | 100 | Plus |
| Taspase1-PA | 365 | CG5241-PA | 1..365 | 1..365 | 1926 | 100 | Plus |
| CG7860-PB | 332 | CG7860-PB | 8..254 | 7..264 | 287 | 32.6 | Plus |
| CG7860-PA | 332 | CG7860-PA | 8..254 | 7..264 | 287 | 32.6 | Plus |
