Clone Sequence Records
BO04885.3prime Sequence
946 bp (812 high quality bases) assembled on 2005-12-02
> BO04885.3prime
ATGGTCTAGAAAGCTTGCGCGGCCGAGAATGTTGCGCGACCACTGTTTGA
CCATTGGCTTGGTCTTGGACTGCTCGATGCGTTCCGCCTCCAGCATTTGT
TCGGCCAGCTTGCGCTGGTTCTCCCGGAACTGGTTGATGGGATCGTCGAA
CTGGCGATAGTAGTGGAGCACCTCGCGCACGTCGTCCACGTTGTTCTGCG
CAATTATCTTTAGGAAAGCGATAAGGTCCAGCAGTTGGCCATCATCGTCG
TTGCCATGCCAGCGGGCCAAGCCGAATGTGTTGTCCGGATGCATCTTGGT
GGCATTCGCATCCCAGTCCACAACAATCACCTTCTTGAGGTCGCGATTAA
GGTTGTCCAGGTTCTTCACATGATGGCCGTCCACAAAGTGCGTGGCATCC
CTGACCAGGCGGTACATAATGTAGCCGTTGGGATCGAGGGCATCCAGGAT
GGGGAACACGGTCATGCCCTGTTCGGCGGTGAAGACGACAATTTCAAAGT
CCTTGGCGCACTCGGCCAGAAAGTGGTCGACGCCGGGACGCTTCTTGAAG
CGCCAGCCAGTTTGGTAAGTCCAGTCCGGATGCACCAGCACGTCCTTCAT
CTCCAGCACAAGCGTGTAGCGCGGCTGCACGTACGGCGGCTTGAGCGGAT
CGGGCAGCAGTTTGGCGCGCGACGGCTCCTGGATCATGCGCTGATAGTAG
TGAATGCTCTTCCACATCCGCTGCAGATACTGCTGTACCAGCGGCTTGTG
TGTGAACTCGTCCTCGATGGGCTGCCCGTTGGGGTCCACCTCGGGCTTGC
CGAACTCGTAGACGGCCCAGAATCCAGCAGCCACGGCGCTGCCTCCGAAT
ATTGCAAAGCCCAGCTTCATGCGCTTCCAGGCACGCTCGTTCTCCTTTTC
CTCCTCCTCCTCGCGCTTCTTGCGCTCCTGCTCGGGCGTGCTGTCC
BO04885.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2713-PA | 1287 | CG2713-RA | 368..1284 | 935..19 | 4585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttm50-RB | 1868 | CG2713-RB | 499..1426 | 946..19 | 4595 | 99.8 | Minus |
ttm50-RA | 1728 | CG2713-RA | 499..1426 | 946..19 | 4595 | 99.8 | Minus |
ttm2-RA | 1513 | CG12313-RA | 769..1134 | 660..295 | 510 | 76.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2730948..2731478 | 330..860 | 2655 | 100 | Plus |
X | 23542271 | X | 2730519..2730706 | 19..206 | 940 | 100 | Plus |
X | 23542271 | X | 2730766..2730891 | 207..332 | 630 | 100 | Plus |
3L | 28110227 | 3L | 275923..276288 | 660..295 | 495 | 75.7 | Minus |
X | 23542271 | X | 2731534..2731620 | 860..946 | 390 | 96.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:14:47 has no hits.
BO04885.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:16 Download gff for
BO04885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2713-PA | 357..1287 | 18..946 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:42 Download gff for
BO04885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2713-PA | 357..1287 | 18..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:32 Download gff for
BO04885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 499..1426 | 19..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:30:26 Download gff for
BO04885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 499..1426 | 19..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:30:26 Download gff for
BO04885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2730519..2730706 | 19..206 | 100 | <- | Plus |
X | 2730766..2730889 | 207..330 | 100 | <- | Plus |
X | 2730949..2731477 | 331..859 | 100 | <- | Plus |
X | 2731534..2731620 | 860..946 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:32 Download gff for
BO04885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2624799..2624922 | 207..330 | 100 | <- | Plus |
arm_X | 2624552..2624739 | 19..206 | 100 | <- | Plus |
arm_X | 2624982..2625510 | 331..859 | 100 | <- | Plus |
arm_X | 2625567..2625653 | 860..946 | 97 | | Plus |
BO04885.5prime Sequence
904 bp (843 high quality bases) assembled on 2005-11-29
> BO04885.5prime
GAAGTTATCAGTCGACATGAGCATGAGCATGGCACCGGCCACCGTCCTCC
AGTTGCTGCGCGGCCTTAGCACGCCGCGTCTTCTTACCCACATCCACCAG
CACCGCGCATTGGGTAATCACTACCACCACTACCACCAACACTACCAGCA
CCAGCACCACCTCCTCCACCACCAGCAGCAGTACCTCCGACTATTCACTT
GCACAGCACTGCCAGCGGCTGCTCCGGCGCTCTTCTCGATCCTGCACACA
GCGCGTGGCTACAGCAGCACAACCAAGCAGGAAGCTGGAGCCACTGGCCC
CAATGATGCGCCCGAGGTCGCACCGAATGCCCCGCTGCTGGCCAAGCTCT
TTCCTCAGACCTCGCCGGAGGTGGACAGCAACGCCGAGCAGGAGCGCAAG
AAGCGCGAGGAGGAGGAGGAAAAGGAGAACGAGCGTGCCTGGAAGCGCAT
GAAGCTGGGCTTTGCAATATTCGGAGGCAGCGCCGTGGCTGCTGGATTCT
GGGCCGTCTACGAGTTCGGCAAGCCCGAGGTGGACCCCAACGGGCAGCCC
ATCGAGGACGAGTTCACACACAAGCCGCTGGTACAGCAGTATCTGCAGCG
GATGTGGAAGAGCATTCACTACTATCAGCGCATGATCCAGGAGCCGTCGC
GCGCCAAACTGCTGCCCGATCCGCTCAAGCCGCCGTACGTGCAGCCGCGC
TACACGCTTGTGCTGGAGATGAAGGACGTGCTGGTGCATCCGGACTGGAC
TTACCAAACTGGCTGGCGCTTCAAGAAGCGTCCCGGCGTCGACCACTTTC
TGGCCGAGTGCGCCAAGGACTTTGAAATTGTCGTCTTCACCGCCGAACAG
GGCATGACCGTGTTCCCCATCCTGGATGCCCTCGATCCCAACGGCTACAT
TATG
BO04885.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2713-PA | 1287 | CG2713-RA | 1..888 | 17..904 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:12:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttm50-RB | 1868 | CG2713-RB | 142..1030 | 16..904 | 4445 | 100 | Plus |
ttm50-RA | 1728 | CG2713-RA | 142..1030 | 16..904 | 4445 | 100 | Plus |
ttm2-RA | 1513 | CG12313-RA | 769..1014 | 659..904 | 315 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:12:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2731033..2731478 | 904..459 | 2230 | 100 | Minus |
X | 23542271 | X | 2731790..2732049 | 275..16 | 1300 | 100 | Minus |
X | 23542271 | X | 2731534..2731717 | 459..276 | 920 | 100 | Minus |
3L | 28110227 | 3L | 275923..276168 | 659..904 | 315 | 75.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:12:50 has no hits.
BO04885.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:17 Download gff for
BO04885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2713-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:43 Download gff for
BO04885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2713-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:28 Download gff for
BO04885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 142..1030 | 16..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:11:56 Download gff for
BO04885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 142..1030 | 16..904 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:56 Download gff for
BO04885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2731033..2731477 | 460..904 | 100 | <- | Minus |
X | 2731534..2731717 | 276..459 | 100 | <- | Minus |
X | 2731790..2732049 | 16..275 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:28 Download gff for
BO04885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2625066..2625510 | 460..904 | 100 | <- | Minus |
arm_X | 2625567..2625750 | 276..459 | 100 | <- | Minus |
arm_X | 2625823..2626082 | 16..275 | 100 | | Minus |
BO04885.complete Sequence
1318 bp (1318 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629918
> BO04885.complete
GAAGTTATCAGTCGACATGAGCATGAGCATGGCACCGGCCACCGTCCTCC
AGTTGCTGCGCGGCCTTAGCACGCCGCGTCTTCTTACCCACATCCACCAG
CACCGCGCATTGGGTAATCACTACCACCACTACCACCAACACTACCAGCA
CCAGCACCACCTCCTCCACCACCAGCAGCAGTACCTCCGACTATTCACTT
GCACAGCACTGCCAGCGGCTGCTCCGGCGCTCTTCTCGATCCTGCACACA
GCGCGTGGCTACAGCAGCACAACCAAGCAGGAAGCTGGAGCCACTGGCCC
CAATGATGCGCCCGAGGTCGCACCGAATGCCCCGCTGCTGGCCAAGCTCT
TTCCTCAGACCTCGCCGGAGGTGGACAGCAACGCCGAGCAGGAGCGCAAG
AAGCGCGAGGAGGAGGAGGAAAAGGAGAACGAGCGTGCCTGGAAGCGCAT
GAAGCTGGGCTTTGCAATATTCGGAGGCAGCGCCGTGGCTGCTGGATTCT
GGGCCGTCTACGAGTTCGGCAAGCCCGAGGTGGACCCCAACGGGCAGCCC
ATCGAGGACGAGTTCACACACAAGCCGCTGGTACAGCAGTATCTGCAGCG
GATGTGGAAGAGCATTCACTACTATCAGCGCATGATCCAGGAGCCGTCGC
GCGCCAAACTGCTGCCCGATCCGCTCAAGCCGCCGTACGTGCAGCCGCGC
TACACGCTTGTGCTGGAGATGAAGGACGTGCTGGTGCATCCGGACTGGAC
TTACCAAACTGGCTGGCGCTTCAAGAAGCGTCCCGGCGTCGACCACTTTC
TGGCCGAGTGCGCCAAGGACTTTGAAATTGTCGTCTTCACCGCCGAACAG
GGCATGACCGTGTTCCCCATCCTGGATGCCCTCGATCCCAACGGCTACAT
TATGTACCGCCTGGTCAGGGATGCCACGCACTTTGTGGACGGCCATCATG
TGAAGAACCTGGACAACCTTAATCGCGACCTCAAGAAGGTGATTGTTGTG
GACTGGGATGCGAATGCCACCAAGATGCATCCGGACAACACATTCGGCTT
GGCCCGCTGGCATGGCAACGACGATGATGGCCAACTGCTGGACCTTATCG
CTTTCCTAAAGATAATTGCGCAGAACAACGTGGACGACGTGCGCGAGGTG
CTCCACTACTATCGCCAGTTCGACGATCCCATCAACCAGTTCCGGGAGAA
CCAGCGCAAGCTGGCCGAACAAATGCTGGAGGCGGAACGCATCGAGCAGT
CCAAGACCAAGCCAATGGTCAAACAGTGGTCGCGCAACATTCTCGGCCGC
GCAAGCTTTCTAGACCAT
BO04885.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttm50-RB | 1287 | CG2713-PB | 1..1284 | 17..1300 | 6420 | 100 | Plus |
ttm50-RA | 1287 | CG2713-PA | 1..1284 | 17..1300 | 6420 | 100 | Plus |
ttm2-RA | 1230 | CG12313-PA | 586..951 | 659..1024 | 495 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:23:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttm50-RB | 1868 | CG2713-RB | 142..1426 | 16..1300 | 6425 | 100 | Plus |
ttm50-RA | 1728 | CG2713-RA | 142..1426 | 16..1300 | 6425 | 100 | Plus |
ttm2-RA | 1513 | CG12313-RA | 769..1134 | 659..1024 | 495 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2730948..2731478 | 989..459 | 2655 | 100 | Minus |
X | 23542271 | X | 2731790..2732049 | 275..16 | 1300 | 100 | Minus |
X | 23542271 | X | 2730519..2730706 | 1300..1113 | 940 | 100 | Minus |
X | 23542271 | X | 2731534..2731717 | 459..276 | 920 | 100 | Minus |
X | 23542271 | X | 2730766..2730891 | 1112..987 | 630 | 100 | Minus |
3L | 28110227 | 3L | 275923..276288 | 659..1024 | 495 | 75.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:23:38 has no hits.
BO04885.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:07 Download gff for
BO04885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 1..1287 | 17..1301 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:53 Download gff for
BO04885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 137..1421 | 16..1300 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:38:24 Download gff for
BO04885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 143..1426 | 17..1302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:07 Download gff for
BO04885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 137..1421 | 16..1300 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:28 Download gff for
BO04885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 143..1426 | 17..1302 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:28 Download gff for
BO04885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2730517..2730706 | 1113..1302 | 98 | <- | Minus |
X | 2730766..2730889 | 989..1112 | 100 | <- | Minus |
X | 2730949..2731477 | 460..988 | 100 | <- | Minus |
X | 2731534..2731717 | 276..459 | 100 | <- | Minus |
X | 2731790..2732048 | 17..275 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:38:24 Download gff for
BO04885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2624550..2624739 | 1113..1302 | 98 | <- | Minus |
arm_X | 2624799..2624922 | 989..1112 | 100 | <- | Minus |
arm_X | 2624982..2625510 | 460..988 | 100 | <- | Minus |
arm_X | 2625567..2625750 | 276..459 | 100 | <- | Minus |
arm_X | 2625823..2626081 | 17..275 | 100 | | Minus |
BO04885.pep Sequence
Translation from 16 to 1318
> BO04885.pep
MSMSMAPATVLQLLRGLSTPRLLTHIHQHRALGNHYHHYHQHYQHQHHLL
HHQQQYLRLFTCTALPAAAPALFSILHTARGYSSTTKQEAGATGPNDAPE
VAPNAPLLAKLFPQTSPEVDSNAEQERKKREEEEEKENERAWKRMKLGFA
IFGGSAVAAGFWAVYEFGKPEVDPNGQPIEDEFTHKPLVQQYLQRMWKSI
HYYQRMIQEPSRAKLLPDPLKPPYVQPRYTLVLEMKDVLVHPDWTYQTGW
RFKKRPGVDHFLAECAKDFEIVVFTAEQGMTVFPILDALDPNGYIMYRLV
RDATHFVDGHHVKNLDNLNRDLKKVIVVDWDANATKMHPDNTFGLARWHG
NDDDGQLLDLIAFLKIIAQNNVDDVREVLHYYRQFDDPINQFRENQRKLA
EQMLEAERIEQSKTKPMVKQWSRNILGRASFLDH
BO04885.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttm50-PB | 428 | CG2713-PB | 1..428 | 1..428 | 2305 | 100 | Plus |
ttm50-PA | 428 | CG2713-PA | 1..428 | 1..428 | 2305 | 100 | Plus |
ttm2-PA | 409 | CG12313-PA | 87..407 | 107..426 | 1119 | 63.4 | Plus |
ttm3-PA | 343 | CG6691-PA | 61..336 | 149..429 | 912 | 59.1 | Plus |
CG5830-PA | 329 | CG5830-PA | 130..276 | 254..406 | 193 | 32 | Plus |