Clone BO04885 Report

Search the DGRC for BO04885

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:85
Vector:pDNR-Dual
Associated Gene/Transcriptttm50-RA
Protein status:BO04885.pep: validated full length
Sequenced Size:1318

Clone Sequence Records

BO04885.3prime Sequence

946 bp (812 high quality bases) assembled on 2005-12-02

> BO04885.3prime
ATGGTCTAGAAAGCTTGCGCGGCCGAGAATGTTGCGCGACCACTGTTTGA
CCATTGGCTTGGTCTTGGACTGCTCGATGCGTTCCGCCTCCAGCATTTGT
TCGGCCAGCTTGCGCTGGTTCTCCCGGAACTGGTTGATGGGATCGTCGAA
CTGGCGATAGTAGTGGAGCACCTCGCGCACGTCGTCCACGTTGTTCTGCG
CAATTATCTTTAGGAAAGCGATAAGGTCCAGCAGTTGGCCATCATCGTCG
TTGCCATGCCAGCGGGCCAAGCCGAATGTGTTGTCCGGATGCATCTTGGT
GGCATTCGCATCCCAGTCCACAACAATCACCTTCTTGAGGTCGCGATTAA
GGTTGTCCAGGTTCTTCACATGATGGCCGTCCACAAAGTGCGTGGCATCC
CTGACCAGGCGGTACATAATGTAGCCGTTGGGATCGAGGGCATCCAGGAT
GGGGAACACGGTCATGCCCTGTTCGGCGGTGAAGACGACAATTTCAAAGT
CCTTGGCGCACTCGGCCAGAAAGTGGTCGACGCCGGGACGCTTCTTGAAG
CGCCAGCCAGTTTGGTAAGTCCAGTCCGGATGCACCAGCACGTCCTTCAT
CTCCAGCACAAGCGTGTAGCGCGGCTGCACGTACGGCGGCTTGAGCGGAT
CGGGCAGCAGTTTGGCGCGCGACGGCTCCTGGATCATGCGCTGATAGTAG
TGAATGCTCTTCCACATCCGCTGCAGATACTGCTGTACCAGCGGCTTGTG
TGTGAACTCGTCCTCGATGGGCTGCCCGTTGGGGTCCACCTCGGGCTTGC
CGAACTCGTAGACGGCCCAGAATCCAGCAGCCACGGCGCTGCCTCCGAAT
ATTGCAAAGCCCAGCTTCATGCGCTTCCAGGCACGCTCGTTCTCCTTTTC
CTCCTCCTCCTCGCGCTTCTTGCGCTCCTGCTCGGGCGTGCTGTCC

BO04885.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG2713-PA 1287 CG2713-RA 368..1284 935..19 4585 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
ttm50-RB 1868 CG2713-RB 499..1426 946..19 4595 99.8 Minus
ttm50-RA 1728 CG2713-RA 499..1426 946..19 4595 99.8 Minus
ttm2-RA 1513 CG12313-RA 769..1134 660..295 510 76.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2730948..2731478 330..860 2655 100 Plus
X 23542271 X 2730519..2730706 19..206 940 100 Plus
X 23542271 X 2730766..2730891 207..332 630 100 Plus
3L 28110227 3L 275923..276288 660..295 495 75.7 Minus
X 23542271 X 2731534..2731620 860..946 390 96.6 Plus
Blast to na_te.dros performed on 2015-02-13 02:14:47 has no hits.

BO04885.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:16 Download gff for BO04885.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2713-PA 357..1287 18..946 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:42 Download gff for BO04885.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2713-PA 357..1287 18..946 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:32 Download gff for BO04885.3prime
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 499..1426 19..946 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:30:26 Download gff for BO04885.3prime
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 499..1426 19..946 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:30:26 Download gff for BO04885.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2730519..2730706 19..206 100 <- Plus
X 2730766..2730889 207..330 100 <- Plus
X 2730949..2731477 331..859 100 <- Plus
X 2731534..2731620 860..946 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:32 Download gff for BO04885.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2624799..2624922 207..330 100 <- Plus
arm_X 2624552..2624739 19..206 100 <- Plus
arm_X 2624982..2625510 331..859 100 <- Plus
arm_X 2625567..2625653 860..946 97   Plus

BO04885.5prime Sequence

904 bp (843 high quality bases) assembled on 2005-11-29

> BO04885.5prime
GAAGTTATCAGTCGACATGAGCATGAGCATGGCACCGGCCACCGTCCTCC
AGTTGCTGCGCGGCCTTAGCACGCCGCGTCTTCTTACCCACATCCACCAG
CACCGCGCATTGGGTAATCACTACCACCACTACCACCAACACTACCAGCA
CCAGCACCACCTCCTCCACCACCAGCAGCAGTACCTCCGACTATTCACTT
GCACAGCACTGCCAGCGGCTGCTCCGGCGCTCTTCTCGATCCTGCACACA
GCGCGTGGCTACAGCAGCACAACCAAGCAGGAAGCTGGAGCCACTGGCCC
CAATGATGCGCCCGAGGTCGCACCGAATGCCCCGCTGCTGGCCAAGCTCT
TTCCTCAGACCTCGCCGGAGGTGGACAGCAACGCCGAGCAGGAGCGCAAG
AAGCGCGAGGAGGAGGAGGAAAAGGAGAACGAGCGTGCCTGGAAGCGCAT
GAAGCTGGGCTTTGCAATATTCGGAGGCAGCGCCGTGGCTGCTGGATTCT
GGGCCGTCTACGAGTTCGGCAAGCCCGAGGTGGACCCCAACGGGCAGCCC
ATCGAGGACGAGTTCACACACAAGCCGCTGGTACAGCAGTATCTGCAGCG
GATGTGGAAGAGCATTCACTACTATCAGCGCATGATCCAGGAGCCGTCGC
GCGCCAAACTGCTGCCCGATCCGCTCAAGCCGCCGTACGTGCAGCCGCGC
TACACGCTTGTGCTGGAGATGAAGGACGTGCTGGTGCATCCGGACTGGAC
TTACCAAACTGGCTGGCGCTTCAAGAAGCGTCCCGGCGTCGACCACTTTC
TGGCCGAGTGCGCCAAGGACTTTGAAATTGTCGTCTTCACCGCCGAACAG
GGCATGACCGTGTTCCCCATCCTGGATGCCCTCGATCCCAACGGCTACAT
TATG

BO04885.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2713-PA 1287 CG2713-RA 1..888 17..904 4440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
ttm50-RB 1868 CG2713-RB 142..1030 16..904 4445 100 Plus
ttm50-RA 1728 CG2713-RA 142..1030 16..904 4445 100 Plus
ttm2-RA 1513 CG12313-RA 769..1014 659..904 315 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2731033..2731478 904..459 2230 100 Minus
X 23542271 X 2731790..2732049 275..16 1300 100 Minus
X 23542271 X 2731534..2731717 459..276 920 100 Minus
3L 28110227 3L 275923..276168 659..904 315 75.2 Plus
Blast to na_te.dros performed on 2015-02-12 01:12:50 has no hits.

BO04885.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:17 Download gff for BO04885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2713-PA 1..888 17..904 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:43 Download gff for BO04885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2713-PA 1..888 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:28 Download gff for BO04885.5prime
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 142..1030 16..904 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:11:56 Download gff for BO04885.5prime
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 142..1030 16..904 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:56 Download gff for BO04885.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2731033..2731477 460..904 100 <- Minus
X 2731534..2731717 276..459 100 <- Minus
X 2731790..2732049 16..275 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:28 Download gff for BO04885.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2625066..2625510 460..904 100 <- Minus
arm_X 2625567..2625750 276..459 100 <- Minus
arm_X 2625823..2626082 16..275 100   Minus

BO04885.complete Sequence

1318 bp (1318 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629918

> BO04885.complete
GAAGTTATCAGTCGACATGAGCATGAGCATGGCACCGGCCACCGTCCTCC
AGTTGCTGCGCGGCCTTAGCACGCCGCGTCTTCTTACCCACATCCACCAG
CACCGCGCATTGGGTAATCACTACCACCACTACCACCAACACTACCAGCA
CCAGCACCACCTCCTCCACCACCAGCAGCAGTACCTCCGACTATTCACTT
GCACAGCACTGCCAGCGGCTGCTCCGGCGCTCTTCTCGATCCTGCACACA
GCGCGTGGCTACAGCAGCACAACCAAGCAGGAAGCTGGAGCCACTGGCCC
CAATGATGCGCCCGAGGTCGCACCGAATGCCCCGCTGCTGGCCAAGCTCT
TTCCTCAGACCTCGCCGGAGGTGGACAGCAACGCCGAGCAGGAGCGCAAG
AAGCGCGAGGAGGAGGAGGAAAAGGAGAACGAGCGTGCCTGGAAGCGCAT
GAAGCTGGGCTTTGCAATATTCGGAGGCAGCGCCGTGGCTGCTGGATTCT
GGGCCGTCTACGAGTTCGGCAAGCCCGAGGTGGACCCCAACGGGCAGCCC
ATCGAGGACGAGTTCACACACAAGCCGCTGGTACAGCAGTATCTGCAGCG
GATGTGGAAGAGCATTCACTACTATCAGCGCATGATCCAGGAGCCGTCGC
GCGCCAAACTGCTGCCCGATCCGCTCAAGCCGCCGTACGTGCAGCCGCGC
TACACGCTTGTGCTGGAGATGAAGGACGTGCTGGTGCATCCGGACTGGAC
TTACCAAACTGGCTGGCGCTTCAAGAAGCGTCCCGGCGTCGACCACTTTC
TGGCCGAGTGCGCCAAGGACTTTGAAATTGTCGTCTTCACCGCCGAACAG
GGCATGACCGTGTTCCCCATCCTGGATGCCCTCGATCCCAACGGCTACAT
TATGTACCGCCTGGTCAGGGATGCCACGCACTTTGTGGACGGCCATCATG
TGAAGAACCTGGACAACCTTAATCGCGACCTCAAGAAGGTGATTGTTGTG
GACTGGGATGCGAATGCCACCAAGATGCATCCGGACAACACATTCGGCTT
GGCCCGCTGGCATGGCAACGACGATGATGGCCAACTGCTGGACCTTATCG
CTTTCCTAAAGATAATTGCGCAGAACAACGTGGACGACGTGCGCGAGGTG
CTCCACTACTATCGCCAGTTCGACGATCCCATCAACCAGTTCCGGGAGAA
CCAGCGCAAGCTGGCCGAACAAATGCTGGAGGCGGAACGCATCGAGCAGT
CCAAGACCAAGCCAATGGTCAAACAGTGGTCGCGCAACATTCTCGGCCGC
GCAAGCTTTCTAGACCAT

BO04885.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
ttm50-RB 1287 CG2713-PB 1..1284 17..1300 6420 100 Plus
ttm50-RA 1287 CG2713-PA 1..1284 17..1300 6420 100 Plus
ttm2-RA 1230 CG12313-PA 586..951 659..1024 495 75.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
ttm50-RB 1868 CG2713-RB 142..1426 16..1300 6425 100 Plus
ttm50-RA 1728 CG2713-RA 142..1426 16..1300 6425 100 Plus
ttm2-RA 1513 CG12313-RA 769..1134 659..1024 495 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2730948..2731478 989..459 2655 100 Minus
X 23542271 X 2731790..2732049 275..16 1300 100 Minus
X 23542271 X 2730519..2730706 1300..1113 940 100 Minus
X 23542271 X 2731534..2731717 459..276 920 100 Minus
X 23542271 X 2730766..2730891 1112..987 630 100 Minus
3L 28110227 3L 275923..276288 659..1024 495 75.7 Plus
Blast to na_te.dros performed on 2014-11-27 13:23:38 has no hits.

BO04885.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:07 Download gff for BO04885.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 1..1287 17..1301 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:53 Download gff for BO04885.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 137..1421 16..1300 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:38:24 Download gff for BO04885.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 143..1426 17..1302 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:07 Download gff for BO04885.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 137..1421 16..1300 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:28 Download gff for BO04885.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 143..1426 17..1302 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:28 Download gff for BO04885.complete
Subject Subject Range Query Range Percent Splice Strand
X 2730517..2730706 1113..1302 98 <- Minus
X 2730766..2730889 989..1112 100 <- Minus
X 2730949..2731477 460..988 100 <- Minus
X 2731534..2731717 276..459 100 <- Minus
X 2731790..2732048 17..275 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:38:24 Download gff for BO04885.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2624550..2624739 1113..1302 98 <- Minus
arm_X 2624799..2624922 989..1112 100 <- Minus
arm_X 2624982..2625510 460..988 100 <- Minus
arm_X 2625567..2625750 276..459 100 <- Minus
arm_X 2625823..2626081 17..275 100   Minus

BO04885.pep Sequence

Translation from 16 to 1318

> BO04885.pep
MSMSMAPATVLQLLRGLSTPRLLTHIHQHRALGNHYHHYHQHYQHQHHLL
HHQQQYLRLFTCTALPAAAPALFSILHTARGYSSTTKQEAGATGPNDAPE
VAPNAPLLAKLFPQTSPEVDSNAEQERKKREEEEEKENERAWKRMKLGFA
IFGGSAVAAGFWAVYEFGKPEVDPNGQPIEDEFTHKPLVQQYLQRMWKSI
HYYQRMIQEPSRAKLLPDPLKPPYVQPRYTLVLEMKDVLVHPDWTYQTGW
RFKKRPGVDHFLAECAKDFEIVVFTAEQGMTVFPILDALDPNGYIMYRLV
RDATHFVDGHHVKNLDNLNRDLKKVIVVDWDANATKMHPDNTFGLARWHG
NDDDGQLLDLIAFLKIIAQNNVDDVREVLHYYRQFDDPINQFRENQRKLA
EQMLEAERIEQSKTKPMVKQWSRNILGRASFLDH

BO04885.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
ttm50-PB 428 CG2713-PB 1..428 1..428 2305 100 Plus
ttm50-PA 428 CG2713-PA 1..428 1..428 2305 100 Plus
ttm2-PA 409 CG12313-PA 87..407 107..426 1119 63.4 Plus
ttm3-PA 343 CG6691-PA 61..336 149..429 912 59.1 Plus
CG5830-PA 329 CG5830-PA 130..276 254..406 193 32 Plus