Clone BO04887 Report

Search the DGRC for BO04887

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG11163-RA
Protein status:BO04887.pep: validated full length
Sequenced Size:1528

Clone Sequence Records

BO04887.3prime Sequence

963 bp (833 high quality bases) assembled on 2005-12-02

> BO04887.3prime
ATGGTCTAGAAAGCTTGCCTCTGTTGTAGGTTCCAATTGAATGGTTGAAT
GCTTGATGTTATATCTTGGGCTGGATACGAGCGCCGTGGCAGCCTGCAGT
ACCTCATTGCCGTCCGCTCGGGAGTCTGTAACGAGATGCACCATCAGCAC
CCTTTGCTGAGAGGTCTGTTGCCACACGTTTAGGTGGTGCAAAGATCTGA
CACCTTCGATGCTGCCCAGCTCCAAGTGCAGAGTGCGCATATTAAGGTTT
TGTGGAACTGCATTCACGATGATGCCCAAAGACTCCCGAAACAGACGCAA
GGTAGTCATTATTACAATAATTGAGAATATGAGAGTACACAGGGGATCAG
CATACTTGGCACCTGGACAAACTTTAATTAGGACGGCGGCCAAAAAAACG
CCAATGCTCTGCACTAGGTCTCCAATCACATGAATCATAGCAGCACGCAG
GTTCAGGTTTTTATCCTCGTGTGCCAGCTCCATGTTTGAAGTCCCAGTCA
GAGTTGGTTTTTTCCCATTTGTAATAACAATCTTATGCTCGTTTGAATTA
ATTTCTTTCCTTATTGAATCCTCCTCATCTGCCGTTGAAGCGCTTTGACT
TCCAATGGTCGTAAGAAAGTTCGAATTGGAACGTGTTTGTGAAAGACTAT
CGTTTGGCTCATGTCCGTTTCCGTGACTGTGGCTGTGACTATGACTATGG
CTGTGACTGTGGCCATGACCATTCCCGTTCACGAACCAGGATCCATGCAA
AACAAACATCATTACGATATTTATGACTATGCCAATGCCTGAAATCAGCA
TCATCATATCGGCGTTTAATTCAAAGTCTTGGGAGAAGATCCTCTCAATA
GCCACAACCACGAGCAGGGTAGTTACGAACCAGATTCCCAAATAGAAGCC
AGAGCTCCGATAACCTCAAAGCGTTTGTACCCAAAGGACATACGCTCGTC
TGGCGGGCGACCC

BO04887.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11163-PA 1497 CG11163-RA 621..1494 892..19 4370 100 Minus
CG11163-PB 1497 CG11163-RB 621..1494 892..19 4370 100 Minus
CG11163-PC 1497 CG11163-RC 621..1494 892..19 4370 100 Minus
CG11163-PD 1497 CG11163-RD 621..1494 892..19 4370 100 Minus
CG11163-PA 1497 CG11163-RA 549..622 963..890 370 100 Minus
CG11163-PB 1497 CG11163-RB 549..622 963..890 370 100 Minus
CG11163-PC 1497 CG11163-RC 549..622 963..890 370 100 Minus
CG11163-PD 1497 CG11163-RD 549..622 963..890 370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT41F-RD 1983 CG11163-RD 850..1795 963..19 4705 99.9 Minus
ZnT41F-RC 2042 CG11163-RC 909..1854 963..19 4705 99.9 Minus
ZnT41F-RB 2461 CG11163-RB 1328..2273 963..19 4705 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5776321..5776591 493..763 1355 100 Plus
2R 25286936 2R 5775260..5775429 197..366 850 100 Plus
2R 25286936 2R 5777364..5777518 764..917 725 99.4 Plus
2R 25286936 2R 5775730..5775857 367..494 640 100 Plus
2R 25286936 2R 5774964..5775078 19..133 560 99.1 Plus
2R 25286936 2R 5775126..5775199 126..199 370 100 Plus
2R 25286936 2R 5777712..5777758 917..963 235 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:12:59 has no hits.

BO04887.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:19 Download gff for BO04887.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11163-PD 549..1497 18..963 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:47 Download gff for BO04887.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11163-PC 549..1497 18..963 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:31 Download gff for BO04887.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11163-RB 1328..2273 19..963 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:26 Download gff for BO04887.3prime
Subject Subject Range Query Range Percent Splice Strand
ZnT41F-RB 1328..2273 19..963 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:12:26 Download gff for BO04887.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5774964..5775070 19..125 100 <- Plus
2R 5775126..5775196 126..196 100 <- Plus
2R 5775260..5775429 197..366 100 <- Plus
2R 5775730..5775856 367..493 100 <- Plus
2R 5776322..5776591 494..763 100 <- Plus
2R 5777364..5777517 764..916 99 <- Plus
2R 5777712..5777758 917..963 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:31 Download gff for BO04887.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1662469..1662575 19..125 100 <- Plus
arm_2R 1662631..1662701 126..196 100 <- Plus
arm_2R 1662765..1662934 197..366 100 <- Plus
arm_2R 1663235..1663361 367..493 100 <- Plus
arm_2R 1663827..1664096 494..763 100 <- Plus
arm_2R 1664869..1665022 764..916 99 <- Plus
arm_2R 1665217..1665263 917..963 100   Plus

BO04887.5prime Sequence

864 bp (814 high quality bases) assembled on 2005-12-02

> BO04887.5prime
GAAGTTATCAGTCGACATGCCAAAATATCAGAAGCTTGACAACACACTGT
TGCCCAACGCTCACGATGACGACTCTGAAGGGGGTTTCCCGGGTTACTTT
GATGATAATCATCAAAGTTTGGGAATCCAACAGGATCCAGATACTAGAGA
TGATCGACTGTCAGATTACCAAGATAGGTATTACAGCGTTAACAACAATA
GTGTTAATAGGGAGGTGGTGACAATTGGGTCAAATGTCGTCCGGGTTCCA
GAGGAGCAAACCTGGGAAGTGCCACTGTTGGGCGATTGTGGTGACAGTGC
GAGAAACCAGAGCTCGGAAACGGAATTTGATATGCAGCGTGAGTGCTGCA
ATCATCAACCAGGGTTCAGAGCCAACTCGAAGAGCAAATCTGCACAGGAG
GCCAAGTATAAAATTATGCTCGCAGTTGCTCTGTGTTGCGTATTTATGAT
CATTGAATTTCTTGGCGGCTATGTCGCCGGAAGTCTGGCCATAATGACGG
ATGCCGCCCATTTAGCATCTGATTGCATTAGTTTCGTCATCGGTCTAGTC
GCCATATGGATAGGGGGTCGCCCGCCAGACGAGCGTATGTCCTTTGGGTA
CAAACGCTTTGAGGTTATCGGAGCTCTGGCTTCTATTTTGGGAATCTGGT
TCGTAACTACCCTGCTCGTGGTTGTGGCTATTGAGAGGATCTTCTCCCAA
GACTTTGAATTAAACGCCGATATGATGATGCTGATTTCAGGCATTGGCAT
AGTCATAAATATCGTAATGATGTTTGTTTTGCATGGATCCTGGTTCGTGA
ACGGGAATGGTCATGGCCACAGTCACAGCCATAGTCATAGTCACAGCCAC
AGTCACGGAAACGG

BO04887.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11163-PA 1497 CG11163-RA 1..848 17..864 4240 100 Plus
CG11163-PB 1497 CG11163-RB 1..848 17..864 4240 100 Plus
CG11163-PC 1497 CG11163-RC 1..848 17..864 4240 100 Plus
CG11163-PD 1497 CG11163-RD 1..848 17..864 4240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT41F-RD 1983 CG11163-RD 300..1149 15..864 4250 100 Plus
ZnT41F-RC 2042 CG11163-RC 359..1208 15..864 4250 100 Plus
ZnT41F-RB 2461 CG11163-RB 778..1627 15..864 4250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5778201..5778496 310..15 1480 100 Minus
2R 25286936 2R 5777712..5777875 611..448 820 100 Minus
2R 25286936 2R 5777364..5777518 765..611 775 100 Minus
2R 25286936 2R 5777989..5778129 448..308 705 100 Minus
2R 25286936 2R 5776493..5776591 864..766 495 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:31:06 has no hits.

BO04887.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:20 Download gff for BO04887.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11163-PA 1..848 17..864 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:49 Download gff for BO04887.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11163-PD 1..848 17..864 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:18:05 Download gff for BO04887.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11163-RB 778..1627 15..864 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:36:26 Download gff for BO04887.5prime
Subject Subject Range Query Range Percent Splice Strand
ZnT41F-RB 778..1627 15..864 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:36:26 Download gff for BO04887.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5777989..5778126 311..448 100 <- Minus
2R 5776493..5776591 766..864 100 <- Minus
2R 5777364..5777517 612..765 100 <- Minus
2R 5777712..5777874 449..611 100 <- Minus
2R 5778201..5778496 15..310 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:18:05 Download gff for BO04887.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1663998..1664096 766..864 100 <- Minus
arm_2R 1664869..1665022 612..765 100 <- Minus
arm_2R 1665217..1665379 449..611 100 <- Minus
arm_2R 1665494..1665631 311..448 100 <- Minus
arm_2R 1665706..1666001 15..310 100   Minus

BO04887.complete Sequence

1528 bp (1528 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629919

> BO04887.complete
GAAGTTATCAGTCGACATGCCAAAATATCAGAAGCTTGACAACACACTGT
TGCCCAACGCTCACGATGACGACTCTGAAGGGGGTTTCCCGGGTTACTTT
GATGATAATCATCAAAGTTTGGGAATCCAACAGGATCCAGATACTAGAGA
TGATCGACTGTCAGATTACCAAGATAGGTATTACAGCGTTAACAACAATA
GTGTTAATAGGGAGGTGGTGACAATTGGGTCAAATGTCGTCCGGGTTCCA
GAGGAGCAAACCTGGGAAGTGCCACTGTTGGGCGATTGTGGTGACAGTGC
GAGAAACCAGAGCTCGGAAACGGAATTTGATATGCAGCGTGAGTGCTGCA
ATCATCAACCAGGGTTCAGAGCCAACTCGAAGAGCAAATCTGCACAGGAG
GCCAAGTATAAAATTATGCTCGCAGTTGCTCTGTGTTGCGTATTTATGAT
CATTGAATTTCTTGGCGGCTATGTCGCCGGAAGTCTGGCCATAATGACGG
ATGCCGCCCATTTAGCATCTGATTGCATTAGTTTCGTCATCGGTCTAGTC
GCCATATGGATAGGGGGTCGCCCGCCAGACGAGCGTATGTCCTTTGGGTA
CAAACGCTTTGAGGTTATCGGAGCTCTGGCTTCTATTTTGGGAATCTGGT
TCGTAACTACCCTGCTCGTGGTTGTGGCTATTGAGAGGATCTTCTCCCAA
GACTTTGAATTAAACGCCGATATGATGATGCTGATTTCAGGCATTGGCAT
AGTCATAAATATCGTAATGATGTTTGTTTTGCATGGATCCTGGTTCGTGA
ACGGGAATGGTCATGGCCACAGTCACAGCCATAGTCATAGTCACAGCCAC
AGTCACGGAAACGGACATGAGCCAAACGATAGTCTTTCACAAACACGTTC
CAATTCGAACTTTCTTACGACCATTGGAAGTCAAAGCGCTTCAACGGCAG
ATGAGGAGGATTCAATAAGGAAAGAAATTAATTCAAACGAGCATAAGATT
GTTATTACAAATGGGAAAAAACCAACTCTGACTGGGACTTCAAACATGGA
GCTGGCACACGAGGATAAAAACCTGAACCTGCGTGCTGCTATGATTCATG
TGATTGGAGACCTAGTGCAGAGCATTGGCGTTTTTTTGGCCGCCGTCCTA
ATTAAAGTTTGTCCAGGTGCCAAGTATGCTGATCCCCTGTGTACTCTCAT
ATTCTCAATTATTGTAATAATGACTACCTTGCGTCTGTTTCGGGAGTCTT
TGGGCATCATCGTGAATGCAGTTCCACAAAACCTTAATATGCGCACTCTG
CACTTGGAGCTGGGCAGCATCGAAGGTGTCAGATCTTTGCACCACCTAAA
CGTGTGGCAACAGACCTCTCAGCAAAGGGTGCTGATGGTGCATCTCGTTA
CAGACTCCCGAGCGGACGGCAATGAGGTACTGCAGGCTGCCACGGCGCTC
GTATCCAGCCCAAGATATAACATCAAGCATTCAACCATTCAATTGGAACC
TACAACAGAGGCAAGCTTTCTAGACCAT

BO04887.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT41F-RD 1497 CG11163-PD 1..1494 17..1510 7470 100 Plus
ZnT41F-RC 1497 CG11163-PC 1..1494 17..1510 7470 100 Plus
ZnT41F-RB 1497 CG11163-PB 1..1494 17..1510 7470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT41F-RD 1983 CG11163-RD 300..1795 15..1510 7480 100 Plus
ZnT41F-RC 2042 CG11163-RC 359..1854 15..1510 7480 100 Plus
ZnT41F-RB 2461 CG11163-RB 778..2273 15..1510 7480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5778201..5778496 310..15 1480 100 Minus
2R 25286936 2R 5776321..5776591 1036..766 1355 100 Minus
2R 25286936 2R 5775260..5775429 1332..1163 850 100 Minus
2R 25286936 2R 5777712..5777875 611..448 820 100 Minus
2R 25286936 2R 5777364..5777518 765..611 775 100 Minus
2R 25286936 2R 5777989..5778129 448..308 705 100 Minus
2R 25286936 2R 5775730..5775857 1162..1035 640 100 Minus
2R 25286936 2R 5774964..5775078 1510..1396 560 99.1 Minus
2R 25286936 2R 5775126..5775199 1403..1330 370 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:50:36 has no hits.

BO04887.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:33 Download gff for BO04887.complete
Subject Subject Range Query Range Percent Splice Strand
CG11163-RC 1..1497 17..1511 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:07 Download gff for BO04887.complete
Subject Subject Range Query Range Percent Splice Strand
CG11163-RC 375..1870 15..1510 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:21 Download gff for BO04887.complete
Subject Subject Range Query Range Percent Splice Strand
CG11163-RB 780..2273 17..1512 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:33 Download gff for BO04887.complete
Subject Subject Range Query Range Percent Splice Strand
CG11163-RC 375..1870 15..1510 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:04 Download gff for BO04887.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT41F-RB 780..2273 17..1512 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:04 Download gff for BO04887.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5775260..5775429 1163..1332 100 <- Minus
2R 5775730..5775856 1036..1162 100 <- Minus
2R 5776322..5776591 766..1035 100 <- Minus
2R 5777364..5777517 612..765 100 <- Minus
2R 5777712..5777874 449..611 100 <- Minus
2R 5777989..5778126 311..448 100 <- Minus
2R 5778201..5778494 17..310 100   Minus
2R 5774962..5775070 1404..1512 98 <- Minus
2R 5775126..5775196 1333..1403 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:21 Download gff for BO04887.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1663235..1663361 1036..1162 100 <- Minus
arm_2R 1662765..1662934 1163..1332 100 <- Minus
arm_2R 1662467..1662575 1404..1512 98 <- Minus
arm_2R 1662631..1662701 1333..1403 100 <- Minus
arm_2R 1663827..1664096 766..1035 100 <- Minus
arm_2R 1664869..1665022 612..765 100 <- Minus
arm_2R 1665217..1665379 449..611 100 <- Minus
arm_2R 1665494..1665631 311..448 100 <- Minus
arm_2R 1665706..1665999 17..310 100   Minus

BO04887.pep Sequence

Translation from 16 to 1528

> BO04887.pep
MPKYQKLDNTLLPNAHDDDSEGGFPGYFDDNHQSLGIQQDPDTRDDRLSD
YQDRYYSVNNNSVNREVVTIGSNVVRVPEEQTWEVPLLGDCGDSARNQSS
ETEFDMQRECCNHQPGFRANSKSKSAQEAKYKIMLAVALCCVFMIIEFLG
GYVAGSLAIMTDAAHLASDCISFVIGLVAIWIGGRPPDERMSFGYKRFEV
IGALASILGIWFVTTLLVVVAIERIFSQDFELNADMMMLISGIGIVINIV
MMFVLHGSWFVNGNGHGHSHSHSHSHSHSHGNGHEPNDSLSQTRSNSNFL
TTIGSQSASTADEEDSIRKEINSNEHKIVITNGKKPTLTGTSNMELAHED
KNLNLRAAMIHVIGDLVQSIGVFLAAVLIKVCPGAKYADPLCTLIFSIIV
IMTTLRLFRESLGIIVNAVPQNLNMRTLHLELGSIEGVRSLHHLNVWQQT
SQQRVLMVHLVTDSRADGNEVLQAATALVSSPRYNIKHSTIQLEPTTEAS
FLDH

BO04887.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT41F-PD 498 CG11163-PD 1..498 1..498 2584 100 Plus
ZnT41F-PC 498 CG11163-PC 1..498 1..498 2584 100 Plus
ZnT41F-PB 498 CG11163-PB 1..498 1..498 2584 100 Plus
ZnT41F-PA 498 CG11163-PA 1..498 1..498 2584 100 Plus
ZnT35C-PB 440 CG3994-PB 54..426 128..497 608 36.6 Plus