Clone Sequence Records
BO04888.3prime Sequence
925 bp (828 high quality bases) assembled on 2005-12-02
> BO04888.3prime
ATGGTCTAGAAAGCTTGCTGTGATCTCGGGAGCACTGTGCTTCAGCTCCG
GCGACGTGGAGAAGGGCCGATGCAGCATCAGTTGGCCACTGTGATGGTAG
CCGGTCGTGGTGGGCTCATGGTGTTGGTTGCCACCTCCTCCTCCGACGGA
TGCTGCCGCCGCCACTGCCGTGGAGTTGAGCTTCTCCGGGGAGTTGATCC
TCAGCTTCGGCGGCGGATGCGGTGGTCCATGACCACCTGGAACGCACTCC
ACACTGTAGGCAGCCGCGTAGGCCGGGTGATGCAGTGGCGGTCCGCCGGA
TGCGCCGTTCAGTGCCAGCGACTGCGGCAGCTGCGGATGCGGACGCAGGA
CAATCGGCTGGATGGGAAACTGCTGCGACATCTCCTTCAGGTTGCTGAAG
CTCTGCAGGTAACAGCCGGCGCTGAACAGACTGGTGGCCGCGTCCAGCTT
GAAGGGTGGCAGACAGCCCGGACCGGTCAGAGGTCCTCCGGGTCCTGCGC
CCGCCCCGCCCCCGTAGCCCGGCGGCAGTTGGGGCGGCGTGTGGGTGGGC
GAGGCCAGCGGCAGGGGCAGCGAGAGGGGCAGTGGCAGCGATCCGCTCAG
ATCCCGCGGCTTGTCGTCGTCCACGCTCAAGCTCTCCTCGCGGTCGTTGG
CGCCGTTGGAGGTGCTGCCCGGACTATGCTGCAGCTGCAGGCTGCTCGGC
ACCGGCGAGTGGGTGCCCAGTGAGATGTCCGAGTCGGAGCTGTCCGACGG
CGTTGGTGAGGCAGCTCCGTCCGCCCGCCGGCTCCGACAGCCCATTCCCG
AGCTGTTCTGGCTATGCTGGATGCGATTCTTGGGCGCAGCAGCCCGATCC
CGCTGGCGGCGGTTCTTGAACAGTTGCCCACTTGCGTGGGATTCAGGCCG
GTGGCCTTGGNCAGCTCCCGCTCTT
BO04888.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18455-PA | 1464 | Optix-RA | 609..1461 | 871..19 | 4240 | 99.8 | Minus |
CG18455-PB | 780 | Optix-RB | 1..777 | 795..19 | 3885 | 100 | Minus |
CG18455-PA | 1464 | Optix-RA | 557..608 | 922..871 | 241 | 98 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Optix-RC | 2668 | CG18455-RC | 1232..2136 | 922..19 | 4474 | 99.7 | Minus |
Optix-RA | 2358 | CG18455-RA | 922..1826 | 922..19 | 4474 | 99.7 | Minus |
Optix-RB | 1470 | CG18455-RB | 133..938 | 824..19 | 4030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8041192..8041997 | 824..19 | 4030 | 100 | Minus |
2R | 25286936 | 2R | 8034441..8034540 | 922..824 | 424 | 97 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:06:21 has no hits.
BO04888.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:21 Download gff for
BO04888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-PA | 553..1464 | 16..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:50 Download gff for
BO04888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18455-PA | 553..1464 | 16..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:38 Download gff for
BO04888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 918..1826 | 19..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:34 Download gff for
BO04888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 918..1826 | 19..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:34 Download gff for
BO04888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8034437..8034540 | 824..925 | 96 | -> | Minus |
2R | 8041193..8041997 | 19..823 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:38 Download gff for
BO04888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3921942..3922045 | 824..925 | 96 | -> | Minus |
arm_2R | 3928698..3929502 | 19..823 | 100 | | Minus |
BO04888.5prime Sequence
871 bp (860 high quality bases) assembled on 2005-11-29
> BO04888.5prime
GAAGTTATCAGTCGACATGGCCGTTGGACCGACGGAGGGCAAACAGCCGC
CCTCAGAGAGCTTCTCGCCCACGCACCACCAGATTATAGCACCCAGCCCC
ATCCTGGCCGTTCCAACGCTGGCCTTCTCCGCCGCCCAGGTGGAGATCGT
TTGCAAGACGCTCGAGGACTCCGGCGACATCGAGCGGTTGGCCCGCTTCC
TCTGGAGCCTGCCGGTGGCCCTGCCCAACATGCACGAGATCCTCAACTGC
GAGGCGGTGCTCCGTGCCCGCGCAGTGGTCGCCTACCATGTGGGCAACTT
CAGGGAACTTTATGCAATAATAGAGAATCATAAGTTTACTAAGGCGTCCT
ACGGCAAACTGCAGGCCATGTGGCTGGAGGCCCACTACATTGAGGCCGAG
AAGCTGCGCGGTCGATCACTGGGCCCCGTGGACAAGTATCGGGTGCGAAA
GAAGTTCCCCCTGCCGCCGACGATCTGGGATGGCGAGCAGAAGACGCACT
GCTTCAAGGAGCGCACGCGGAGCCTACTGCGCGAATGGTACCTACAGGAT
CCCTACCCGAATCCCACCAAGAAGCGGGAGCTGGCCAAGGCCACCGGCCT
GAATCCCACGCAAGTGGGCAACTGGTTCAAGAACCGCCGCCAGCGGGATC
GGGCTGCTGCGGCCAAGAATCGCATCCAGCATAGCCAGAACAGCTCGGGA
ATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTGCCTCACCAACGCCGTC
GGACAGCTCCGACTCGGACATCTCACTGGGCACCCACTCGCCGGTGCCGA
GCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCACCTCCAACGGCGCCNAC
GACCGCGAGGAGAGCTTGAGC
BO04888.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18455-PA | 1464 | Optix-RA | 1..855 | 17..871 | 4256 | 99.8 | Plus |
CG18455-PB | 780 | Optix-RB | 1..171 | 701..871 | 836 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Optix-RC | 2668 | CG18455-RC | 676..1530 | 17..871 | 4264 | 99.9 | Plus |
Optix-RA | 2358 | CG18455-RA | 366..1220 | 17..871 | 4264 | 99.9 | Plus |
Optix-RB | 1470 | CG18455-RB | 133..332 | 672..871 | 989 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8031958..8032245 | 17..304 | 1440 | 100 | Plus |
2R | 25286936 | 2R | 8034290..8034540 | 422..672 | 1255 | 100 | Plus |
2R | 25286936 | 2R | 8041192..8041391 | 672..871 | 989 | 99.5 | Plus |
2R | 25286936 | 2R | 8033300..8033424 | 299..423 | 625 | 100 | Plus |
3L | 28110227 | 3L | 20790294..20790427 | 511..378 | 340 | 83.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:07:57 has no hits.
BO04888.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:22 Download gff for
BO04888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:51 Download gff for
BO04888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18455-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:40 Download gff for
BO04888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 366..1220 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:32:33 Download gff for
BO04888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 366..1220 | 17..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:32:33 Download gff for
BO04888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8041193..8041391 | 673..871 | 99 | | Plus |
2R | 8031958..8032244 | 17..303 | 100 | -> | Plus |
2R | 8033305..8033423 | 304..422 | 100 | -> | Plus |
2R | 8034291..8034540 | 423..672 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:40 Download gff for
BO04888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3919463..3919749 | 17..303 | 100 | -> | Plus |
arm_2R | 3920810..3920928 | 304..422 | 100 | -> | Plus |
arm_2R | 3921796..3922045 | 423..672 | 100 | -> | Plus |
arm_2R | 3928698..3928896 | 673..871 | 99 | | Plus |
BO04888.complete Sequence
1495 bp (1495 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629920
> BO04888.complete
GAAGTTATCAGTCGACATGGCCGTTGGACCGACGGAGGGCAAACAGCCGC
CCTCAGAGAGCTTCTCGCCCACGCACCACCAGATTATAGCACCCAGCCCC
ATCCTGGCCGTTCCAACGCTGGCCTTCTCCGCCGCCCAGGTGGAGATCGT
TTGCAAGACGCTCGAGGACTCCGGCGACATCGAGCGGTTGGCCCGCTTCC
TCTGGAGCCTGCCGGTGGCCCTGCCCAACATGCACGAGATCCTCAACTGC
GAGGCGGTGCTCCGTGCCCGCGCAGTGGTCGCCTACCATGTGGGCAACTT
CAGGGAACTTTATGCAATAATAGAGAATCATAAGTTTACTAAGGCGTCCT
ACGGCAAACTGCAGGCCATGTGGCTGGAGGCCCACTACATTGAGGCCGAG
AAGCTGCGCGGTCGATCACTGGGCCCCGTGGACAAGTATCGGGTGCGAAA
GAAGTTCCCCCTGCCGCCGACGATCTGGGATGGCGAGCAGAAGACGCACT
GCTTCAAGGAGCGCACGCGGAGCCTACTGCGCGAATGGTACCTACAGGAT
CCCTACCCGAATCCCACCAAGAAGCGGGAGCTGGCCAAGGCCACCGGCCT
GAATCCCACGCAAGTGGGCAACTGGTTCAAGAACCGCCGCCAGCGGGATC
GGGCTGCTGCGGCCAAGAATCGCATCCAGCATAGCCAGAACAGCTCGGGA
ATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTGCCTCACCAACGCCGTC
GGACAGCTCCGACTCGGACATCTCACTGGGCACCCACTCGCCGGTGCCGA
GCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCACCTCCAACGGCGCCAAC
GACCGCGAGGAGAGCTTGAGCGTGGACGACGACAAGCCGCGGGATCTGAG
CGGATCGCTGCCACTGCCCCTCTCGCTGCCCCTGCCGCTGGCCTCGCCCA
CCCACACGCCGCCCCAACTGCCGCCGGGCTACGGGGGCGGGGCGGGCGCA
GGACCCGGAGGACCTCTGACCGGTCCGGGCTGTCTGCCACCCTTCAAGCT
GGACGCGGCCACCAGTCTGTTCAGCGCCGGCTGTTACCTGCAGAGCTTCA
GCAACCTGAAGGAGATGTCGCAGCAGTTTCCCATCCAGCCGATTGTCCTG
CGTCCGCATCCGCAGCTGCCGCAGTCGCTGGCACTGAACGGCGCATCCGG
CGGACCGCCACTGCATCACCCGGCCTACGCGGCTGCCTACAGTGTGGAGT
GCGTTCCAGGTGGTCATGGACCACCGCATCCGCCGCCGAAGCTGAGGATC
AACTCCCCGGAGAAGCTCAACTCCACGGCAGTGGCGGCGGCAGCATCCGT
CGGAGGAGGAGGTGGCAACCAACACCATGAGCCCACCACGACCGGCTACC
ATCACAGTGGCCAACTGATGCTGCATCGGCCCTTCTCCACGTCGCCGGAG
CTGAAGCACAGTGCTCCCGAGATCACAGCAAGCTTTCTAGACCAT
BO04888.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Optix-RC | 1479 | CG18455-PC | 1..1461 | 17..1477 | 7305 | 100 | Plus |
Optix-RA | 1464 | CG18455-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
Optix-RB | 780 | CG18455-PB | 1..777 | 701..1477 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Optix-RC | 2668 | CG18455-RC | 676..2136 | 17..1477 | 7305 | 100 | Plus |
Optix-RA | 2358 | CG18455-RA | 366..1826 | 17..1477 | 7305 | 100 | Plus |
Optix-RB | 1470 | CG18455-RB | 133..938 | 672..1477 | 4030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8041192..8041997 | 672..1477 | 4030 | 100 | Plus |
2R | 25286936 | 2R | 8031958..8032245 | 17..304 | 1440 | 100 | Plus |
2R | 25286936 | 2R | 8034290..8034540 | 422..672 | 1255 | 100 | Plus |
2R | 25286936 | 2R | 8033300..8033424 | 299..423 | 625 | 100 | Plus |
3L | 28110227 | 3L | 20790294..20790427 | 511..378 | 340 | 83.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:35:02 has no hits.
BO04888.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:55 Download gff for
BO04888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 1..1464 | 17..1480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:40 Download gff for
BO04888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 326..1786 | 17..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:11 Download gff for
BO04888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 366..1826 | 17..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:55 Download gff for
BO04888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 326..1786 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:59 Download gff for
BO04888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 366..1826 | 17..1479 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:59 Download gff for
BO04888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8031958..8032244 | 17..303 | 100 | -> | Plus |
2R | 8033305..8033423 | 304..422 | 100 | -> | Plus |
2R | 8034291..8034540 | 423..672 | 100 | -> | Plus |
2R | 8041193..8041997 | 673..1479 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:11 Download gff for
BO04888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3921796..3922045 | 423..672 | 100 | -> | Plus |
arm_2R | 3919463..3919749 | 17..303 | 100 | -> | Plus |
arm_2R | 3920810..3920928 | 304..422 | 100 | -> | Plus |
arm_2R | 3928698..3929502 | 673..1479 | 99 | | Plus |
BO04888.pep Sequence
Translation from 16 to 1495
> BO04888.pep
MAVGPTEGKQPPSESFSPTHHQIIAPSPILAVPTLAFSAAQVEIVCKTLE
DSGDIERLARFLWSLPVALPNMHEILNCEAVLRARAVVAYHVGNFRELYA
IIENHKFTKASYGKLQAMWLEAHYIEAEKLRGRSLGPVDKYRVRKKFPLP
PTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAKATGLNPTQV
GNWFKNRRQRDRAAAAKNRIQHSQNSSGMGCRSRRADGAASPTPSDSSDS
DISLGTHSPVPSSLQLQHSPGSTSNGANDREESLSVDDDKPRDLSGSLPL
PLSLPLPLASPTHTPPQLPPGYGGGAGAGPGGPLTGPGCLPPFKLDAATS
LFSAGCYLQSFSNLKEMSQQFPIQPIVLRPHPQLPQSLALNGASGGPPLH
HPAYAAAYSVECVPGGHGPPHPPPKLRINSPEKLNSTAVAAAASVGGGGG
NQHHEPTTTGYHHSGQLMLHRPFSTSPELKHSAPEITASFLDH
BO04888.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Optix-PC | 492 | CG18455-PC | 1..487 | 1..487 | 2607 | 100 | Plus |
Optix-PA | 487 | CG18455-PA | 1..487 | 1..487 | 2607 | 100 | Plus |
Optix-PB | 259 | CG18455-PB | 1..259 | 229..487 | 1397 | 100 | Plus |
so-PA | 416 | CG11121-PA | 98..393 | 32..350 | 633 | 43 | Plus |
Six4-PB | 392 | CG3871-PB | 159..352 | 15..212 | 516 | 51.5 | Plus |