Clone BO04888 Report

Search the DGRC for BO04888

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptOptix-RA
Protein status:BO04888.pep: validated full length
Sequenced Size:1495

Clone Sequence Records

BO04888.3prime Sequence

925 bp (828 high quality bases) assembled on 2005-12-02

> BO04888.3prime
ATGGTCTAGAAAGCTTGCTGTGATCTCGGGAGCACTGTGCTTCAGCTCCG
GCGACGTGGAGAAGGGCCGATGCAGCATCAGTTGGCCACTGTGATGGTAG
CCGGTCGTGGTGGGCTCATGGTGTTGGTTGCCACCTCCTCCTCCGACGGA
TGCTGCCGCCGCCACTGCCGTGGAGTTGAGCTTCTCCGGGGAGTTGATCC
TCAGCTTCGGCGGCGGATGCGGTGGTCCATGACCACCTGGAACGCACTCC
ACACTGTAGGCAGCCGCGTAGGCCGGGTGATGCAGTGGCGGTCCGCCGGA
TGCGCCGTTCAGTGCCAGCGACTGCGGCAGCTGCGGATGCGGACGCAGGA
CAATCGGCTGGATGGGAAACTGCTGCGACATCTCCTTCAGGTTGCTGAAG
CTCTGCAGGTAACAGCCGGCGCTGAACAGACTGGTGGCCGCGTCCAGCTT
GAAGGGTGGCAGACAGCCCGGACCGGTCAGAGGTCCTCCGGGTCCTGCGC
CCGCCCCGCCCCCGTAGCCCGGCGGCAGTTGGGGCGGCGTGTGGGTGGGC
GAGGCCAGCGGCAGGGGCAGCGAGAGGGGCAGTGGCAGCGATCCGCTCAG
ATCCCGCGGCTTGTCGTCGTCCACGCTCAAGCTCTCCTCGCGGTCGTTGG
CGCCGTTGGAGGTGCTGCCCGGACTATGCTGCAGCTGCAGGCTGCTCGGC
ACCGGCGAGTGGGTGCCCAGTGAGATGTCCGAGTCGGAGCTGTCCGACGG
CGTTGGTGAGGCAGCTCCGTCCGCCCGCCGGCTCCGACAGCCCATTCCCG
AGCTGTTCTGGCTATGCTGGATGCGATTCTTGGGCGCAGCAGCCCGATCC
CGCTGGCGGCGGTTCTTGAACAGTTGCCCACTTGCGTGGGATTCAGGCCG
GTGGCCTTGGNCAGCTCCCGCTCTT

BO04888.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG18455-PA 1464 Optix-RA 609..1461 871..19 4240 99.8 Minus
CG18455-PB 780 Optix-RB 1..777 795..19 3885 100 Minus
CG18455-PA 1464 Optix-RA 557..608 922..871 241 98 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-RC 2668 CG18455-RC 1232..2136 922..19 4474 99.7 Minus
Optix-RA 2358 CG18455-RA 922..1826 922..19 4474 99.7 Minus
Optix-RB 1470 CG18455-RB 133..938 824..19 4030 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8041192..8041997 824..19 4030 100 Minus
2R 25286936 2R 8034441..8034540 922..824 424 97 Minus
Blast to na_te.dros performed on 2015-02-11 23:06:21 has no hits.

BO04888.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:21 Download gff for BO04888.3prime
Subject Subject Range Query Range Percent Splice Strand
Optix-PA 553..1464 16..925 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:50 Download gff for BO04888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18455-PA 553..1464 16..925 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:38 Download gff for BO04888.3prime
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 918..1826 19..925 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:34 Download gff for BO04888.3prime
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 918..1826 19..925 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:34 Download gff for BO04888.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8034437..8034540 824..925 96 -> Minus
2R 8041193..8041997 19..823 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:38 Download gff for BO04888.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3921942..3922045 824..925 96 -> Minus
arm_2R 3928698..3929502 19..823 100   Minus

BO04888.5prime Sequence

871 bp (860 high quality bases) assembled on 2005-11-29

> BO04888.5prime
GAAGTTATCAGTCGACATGGCCGTTGGACCGACGGAGGGCAAACAGCCGC
CCTCAGAGAGCTTCTCGCCCACGCACCACCAGATTATAGCACCCAGCCCC
ATCCTGGCCGTTCCAACGCTGGCCTTCTCCGCCGCCCAGGTGGAGATCGT
TTGCAAGACGCTCGAGGACTCCGGCGACATCGAGCGGTTGGCCCGCTTCC
TCTGGAGCCTGCCGGTGGCCCTGCCCAACATGCACGAGATCCTCAACTGC
GAGGCGGTGCTCCGTGCCCGCGCAGTGGTCGCCTACCATGTGGGCAACTT
CAGGGAACTTTATGCAATAATAGAGAATCATAAGTTTACTAAGGCGTCCT
ACGGCAAACTGCAGGCCATGTGGCTGGAGGCCCACTACATTGAGGCCGAG
AAGCTGCGCGGTCGATCACTGGGCCCCGTGGACAAGTATCGGGTGCGAAA
GAAGTTCCCCCTGCCGCCGACGATCTGGGATGGCGAGCAGAAGACGCACT
GCTTCAAGGAGCGCACGCGGAGCCTACTGCGCGAATGGTACCTACAGGAT
CCCTACCCGAATCCCACCAAGAAGCGGGAGCTGGCCAAGGCCACCGGCCT
GAATCCCACGCAAGTGGGCAACTGGTTCAAGAACCGCCGCCAGCGGGATC
GGGCTGCTGCGGCCAAGAATCGCATCCAGCATAGCCAGAACAGCTCGGGA
ATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTGCCTCACCAACGCCGTC
GGACAGCTCCGACTCGGACATCTCACTGGGCACCCACTCGCCGGTGCCGA
GCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCACCTCCAACGGCGCCNAC
GACCGCGAGGAGAGCTTGAGC

BO04888.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG18455-PA 1464 Optix-RA 1..855 17..871 4256 99.8 Plus
CG18455-PB 780 Optix-RB 1..171 701..871 836 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-RC 2668 CG18455-RC 676..1530 17..871 4264 99.9 Plus
Optix-RA 2358 CG18455-RA 366..1220 17..871 4264 99.9 Plus
Optix-RB 1470 CG18455-RB 133..332 672..871 989 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8031958..8032245 17..304 1440 100 Plus
2R 25286936 2R 8034290..8034540 422..672 1255 100 Plus
2R 25286936 2R 8041192..8041391 672..871 989 99.5 Plus
2R 25286936 2R 8033300..8033424 299..423 625 100 Plus
3L 28110227 3L 20790294..20790427 511..378 340 83.6 Minus
Blast to na_te.dros performed on 2015-02-11 23:07:57 has no hits.

BO04888.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:22 Download gff for BO04888.5prime
Subject Subject Range Query Range Percent Splice Strand
Optix-PA 1..855 17..871 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:51 Download gff for BO04888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18455-PA 1..855 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:40 Download gff for BO04888.5prime
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 366..1220 17..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:32:33 Download gff for BO04888.5prime
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 366..1220 17..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:32:33 Download gff for BO04888.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8041193..8041391 673..871 99   Plus
2R 8031958..8032244 17..303 100 -> Plus
2R 8033305..8033423 304..422 100 -> Plus
2R 8034291..8034540 423..672 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:40 Download gff for BO04888.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3919463..3919749 17..303 100 -> Plus
arm_2R 3920810..3920928 304..422 100 -> Plus
arm_2R 3921796..3922045 423..672 100 -> Plus
arm_2R 3928698..3928896 673..871 99   Plus

BO04888.complete Sequence

1495 bp (1495 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629920

> BO04888.complete
GAAGTTATCAGTCGACATGGCCGTTGGACCGACGGAGGGCAAACAGCCGC
CCTCAGAGAGCTTCTCGCCCACGCACCACCAGATTATAGCACCCAGCCCC
ATCCTGGCCGTTCCAACGCTGGCCTTCTCCGCCGCCCAGGTGGAGATCGT
TTGCAAGACGCTCGAGGACTCCGGCGACATCGAGCGGTTGGCCCGCTTCC
TCTGGAGCCTGCCGGTGGCCCTGCCCAACATGCACGAGATCCTCAACTGC
GAGGCGGTGCTCCGTGCCCGCGCAGTGGTCGCCTACCATGTGGGCAACTT
CAGGGAACTTTATGCAATAATAGAGAATCATAAGTTTACTAAGGCGTCCT
ACGGCAAACTGCAGGCCATGTGGCTGGAGGCCCACTACATTGAGGCCGAG
AAGCTGCGCGGTCGATCACTGGGCCCCGTGGACAAGTATCGGGTGCGAAA
GAAGTTCCCCCTGCCGCCGACGATCTGGGATGGCGAGCAGAAGACGCACT
GCTTCAAGGAGCGCACGCGGAGCCTACTGCGCGAATGGTACCTACAGGAT
CCCTACCCGAATCCCACCAAGAAGCGGGAGCTGGCCAAGGCCACCGGCCT
GAATCCCACGCAAGTGGGCAACTGGTTCAAGAACCGCCGCCAGCGGGATC
GGGCTGCTGCGGCCAAGAATCGCATCCAGCATAGCCAGAACAGCTCGGGA
ATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTGCCTCACCAACGCCGTC
GGACAGCTCCGACTCGGACATCTCACTGGGCACCCACTCGCCGGTGCCGA
GCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCACCTCCAACGGCGCCAAC
GACCGCGAGGAGAGCTTGAGCGTGGACGACGACAAGCCGCGGGATCTGAG
CGGATCGCTGCCACTGCCCCTCTCGCTGCCCCTGCCGCTGGCCTCGCCCA
CCCACACGCCGCCCCAACTGCCGCCGGGCTACGGGGGCGGGGCGGGCGCA
GGACCCGGAGGACCTCTGACCGGTCCGGGCTGTCTGCCACCCTTCAAGCT
GGACGCGGCCACCAGTCTGTTCAGCGCCGGCTGTTACCTGCAGAGCTTCA
GCAACCTGAAGGAGATGTCGCAGCAGTTTCCCATCCAGCCGATTGTCCTG
CGTCCGCATCCGCAGCTGCCGCAGTCGCTGGCACTGAACGGCGCATCCGG
CGGACCGCCACTGCATCACCCGGCCTACGCGGCTGCCTACAGTGTGGAGT
GCGTTCCAGGTGGTCATGGACCACCGCATCCGCCGCCGAAGCTGAGGATC
AACTCCCCGGAGAAGCTCAACTCCACGGCAGTGGCGGCGGCAGCATCCGT
CGGAGGAGGAGGTGGCAACCAACACCATGAGCCCACCACGACCGGCTACC
ATCACAGTGGCCAACTGATGCTGCATCGGCCCTTCTCCACGTCGCCGGAG
CTGAAGCACAGTGCTCCCGAGATCACAGCAAGCTTTCTAGACCAT

BO04888.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-RC 1479 CG18455-PC 1..1461 17..1477 7305 100 Plus
Optix-RA 1464 CG18455-PA 1..1461 17..1477 7305 100 Plus
Optix-RB 780 CG18455-PB 1..777 701..1477 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-RC 2668 CG18455-RC 676..2136 17..1477 7305 100 Plus
Optix-RA 2358 CG18455-RA 366..1826 17..1477 7305 100 Plus
Optix-RB 1470 CG18455-RB 133..938 672..1477 4030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8041192..8041997 672..1477 4030 100 Plus
2R 25286936 2R 8031958..8032245 17..304 1440 100 Plus
2R 25286936 2R 8034290..8034540 422..672 1255 100 Plus
2R 25286936 2R 8033300..8033424 299..423 625 100 Plus
3L 28110227 3L 20790294..20790427 511..378 340 83.6 Minus
Blast to na_te.dros performed on 2014-11-28 08:35:02 has no hits.

BO04888.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:55 Download gff for BO04888.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1..1464 17..1480 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:40 Download gff for BO04888.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 326..1786 17..1479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:11 Download gff for BO04888.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 366..1826 17..1479 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:55 Download gff for BO04888.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 326..1786 17..1477 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:59 Download gff for BO04888.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 366..1826 17..1479 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:59 Download gff for BO04888.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8031958..8032244 17..303 100 -> Plus
2R 8033305..8033423 304..422 100 -> Plus
2R 8034291..8034540 423..672 100 -> Plus
2R 8041193..8041997 673..1479 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:11 Download gff for BO04888.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3921796..3922045 423..672 100 -> Plus
arm_2R 3919463..3919749 17..303 100 -> Plus
arm_2R 3920810..3920928 304..422 100 -> Plus
arm_2R 3928698..3929502 673..1479 99   Plus

BO04888.pep Sequence

Translation from 16 to 1495

> BO04888.pep
MAVGPTEGKQPPSESFSPTHHQIIAPSPILAVPTLAFSAAQVEIVCKTLE
DSGDIERLARFLWSLPVALPNMHEILNCEAVLRARAVVAYHVGNFRELYA
IIENHKFTKASYGKLQAMWLEAHYIEAEKLRGRSLGPVDKYRVRKKFPLP
PTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAKATGLNPTQV
GNWFKNRRQRDRAAAAKNRIQHSQNSSGMGCRSRRADGAASPTPSDSSDS
DISLGTHSPVPSSLQLQHSPGSTSNGANDREESLSVDDDKPRDLSGSLPL
PLSLPLPLASPTHTPPQLPPGYGGGAGAGPGGPLTGPGCLPPFKLDAATS
LFSAGCYLQSFSNLKEMSQQFPIQPIVLRPHPQLPQSLALNGASGGPPLH
HPAYAAAYSVECVPGGHGPPHPPPKLRINSPEKLNSTAVAAAASVGGGGG
NQHHEPTTTGYHHSGQLMLHRPFSTSPELKHSAPEITASFLDH

BO04888.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-PC 492 CG18455-PC 1..487 1..487 2607 100 Plus
Optix-PA 487 CG18455-PA 1..487 1..487 2607 100 Plus
Optix-PB 259 CG18455-PB 1..259 229..487 1397 100 Plus
so-PA 416 CG11121-PA 98..393 32..350 633 43 Plus
Six4-PB 392 CG3871-PB 159..352 15..212 516 51.5 Plus