Clone Sequence Records
BO04890.3prime Sequence
903 bp (831 high quality bases) assembled on 2005-12-02
> BO04890.3prime
ATGGTCTAGAAAGCTTGCGCTGCGCTCAGTTTGCAGAGTTATGTTGGAGT
CCGAATTGGAATAGTTATGCTCCAGTCGCGGGCGAAACTCATCCTCGCCA
TCTGAATAGGACCCCACCGAACGGCAAATGCGTTGAGTTGACGCATAGCC
TTCGATTGCCAGTGCCTCACTCACACCCGGCGGCAACAGCTGCTGGAGCA
GTGCATCCTTGACCGCATTGACGCCAGTCGGCAGTGGCACATGATTCATG
TCGACCGAAGAGTGCGATTGCGACAGGTGCGGCGCCGTCAACCCATTTGC
CAAGCGTGCTTCTCCACAGCCAGCTCCAACTGCAGTTCCATCCCGTTCGT
CGACCTCATCCCTTTGCGTTCGTTCGATGTAGCGAAGAGTGCTGAATAGC
TCCAGCAGATTGCCAAAAGTGTTTCGCAGATCGCACTGGCCCGTGATGTC
GAAGCACAGCTGCGAAACATTCTGGCGCAAAAGGTAGATGGCATACTTTG
TTTGCTGCGACGGCAAAATGGAGCGTGTATACAGAGGAAATTCTCTTGTT
GTGTACGTCAACTCTTTGATATCGTCCACTATCCTTGCTTTCGATGGCTC
GTACAGAATACGGTTCCTCAGAGGTCGATCCATAATGATGGCTAACATCT
GCACCAAATGGGCAACATAACCCAGTGCCGCACTCACTGCCAGCGGCGAG
ACGTTATCCAGAAGCTGTGCGTTTGCCGCCTGACGTGACTCGCTCGTGTA
TTGCTCCATGTGGGGGAAGGCGATGCCGCAGATACTAAATTGCCGACCGC
CCACATTCTGGATGTTATAGATCTCCTGTAGCTCCAACACCAGTGTGGAC
ATTCGGCGCTCCACCTGCCGTTCTATTTGTCTTTTTTGATCGCGCTGTTC
CAG
BO04890.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6116-PA | 2091 | CG6116-RA | 1204..2088 | 903..19 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uvrag-RB | 2465 | CG6116-RB | 1312..2196 | 903..19 | 4425 | 100 | Minus |
| Uvrag-RA | 2520 | CG6116-RA | 1367..2251 | 903..19 | 4425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13288680..13289090 | 541..131 | 2055 | 100 | Minus |
| 2L | 23513712 | 2L | 13288303..13288627 | 866..542 | 1625 | 100 | Minus |
| 2L | 23513712 | 2L | 13289175..13289287 | 131..19 | 565 | 100 | Minus |
| 2L | 23513712 | 2L | 13288203..13288245 | 903..861 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:41:20 has no hits.
BO04890.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:25 Download gff for
BO04890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6116-PA | 1204..2091 | 16..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:55 Download gff for
BO04890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6116-PA | 1204..2091 | 16..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:02 Download gff for
BO04890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uvrag-RA | 1367..2257 | 12..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:50 Download gff for
BO04890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uvrag-RA | 1367..2257 | 12..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:50 Download gff for
BO04890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13288203..13288241 | 865..903 | 100 | -> | Minus |
| 2L | 13288305..13288627 | 542..864 | 100 | -> | Minus |
| 2L | 13288680..13289090 | 131..541 | 100 | -> | Minus |
| 2L | 13289176..13289293 | 12..130 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:02 Download gff for
BO04890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13288203..13288241 | 865..903 | 100 | -> | Minus |
| arm_2L | 13288305..13288627 | 542..864 | 100 | -> | Minus |
| arm_2L | 13288680..13289090 | 131..541 | 100 | -> | Minus |
| arm_2L | 13289176..13289293 | 12..130 | 97 | | Minus |
BO04890.5prime Sequence
821 bp (745 high quality bases) assembled on 2005-12-02
> BO04890.5prime
GAAGTTATCAGTCGACATGAATCTACGGCCGCGATGCCGCAAGTGGCTGC
CCCTAGCCACCCAGCAACTTCGACTGCGGAACCTTAACAGAATTCAGGGA
TTCAATATTGAGTCCTGGCCGCATGAGAAGTCGCTGGAGCTAGATGATCC
GGATGATGTGCTCCTCTACTACACACTACACACGGACAAGGCTAGCGAAG
CGTTCTACACCAGCGAAAAGCTGCCGCAGCGTCACCAACAGCAAAAGTGG
GCGGAGATTTGTACGGACGACGAGGCCTGGCGGAAAACCAATGCGCAGTG
TGTCTGTGTCAAGGTGTGGAAGCACTATTCGGCGGAAAGAAGAGATGGCC
AACCGCCTGAGGTTGAGCAAAGACATAAGGATGTTTTCGGAAGATCCCAG
TTAACGCCCAGCAGGCTGCCACGCCCTCCTGAACTACTGTTCAGCTGGGG
CGTCTACTTCTCCGGCCTTATACCTCTGTCTCCCCTCACATTGTCCCAGT
GCGGACGAAATTGCTTGGTCTTTCAATTGAATGGCGAGCAATTTGCCTCC
CCGTCGATGATAAGCGAGCAGGCCTTGCAGTCGCAGCTGCATTTGCACTA
CCAAAAGTATGCGGAGGAAGAGAAACTAGAAGAGCCGCAGGATGAGGGCA
TAAACTCGCCGGCCGTTAGTCGTAGTTCGAGTCCCGTGCTGCGAATGAGT
ACGATGCGCTATGCACAGCTGAAGTGCCAACGGCAGGAGATTCGGCGAAA
CACAACCTCGAAAAGCTTCTCACGTTGCAACGTCTGCAACGCTTGCATCA
GCAGAAGCGGCGTCAAATGGC
BO04890.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6116-PA | 2091 | CG6116-RA | 1..733 | 17..749 | 3665 | 100 | Plus |
| CG6116-PA | 2091 | CG6116-RA | 737..806 | 752..821 | 350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uvrag-RA | 2520 | CG6116-RA | 164..969 | 17..821 | 3990 | 99.8 | Plus |
| Uvrag-RB | 2465 | CG6116-RB | 112..914 | 17..821 | 3935 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13287373..13287805 | 390..821 | 2100 | 99.5 | Plus |
| 2L | 23513712 | 2L | 13286940..13287313 | 17..390 | 1870 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:42:29 has no hits.
BO04890.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:26 Download gff for
BO04890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6116-PA | 1..806 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:56 Download gff for
BO04890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6116-PA | 1..806 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:52 Download gff for
BO04890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uvrag-RA | 164..969 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:57 Download gff for
BO04890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uvrag-RA | 164..969 | 17..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:57 Download gff for
BO04890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13286940..13287313 | 17..390 | 100 | -> | Plus |
| 2L | 13287374..13287805 | 391..821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:52 Download gff for
BO04890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13286940..13287313 | 17..390 | 100 | -> | Plus |
| arm_2L | 13287374..13287805 | 391..821 | 99 | | Plus |
BO04890.complete Sequence
2122 bp assembled on 2008-08-14
GenBank Submission: FJ629921
> BO04890.complete
GAAGTTATCAGTCGACATGAATCTACGGCCGCGATGCCGCAAGTGGCTGC
CCCTAGCCACCCAGCAACTTCGACTGCGGAACCTTAACAGAATTCAGGGA
TTCAATATTGAGTCCTGGCCGCATGAGAAGTCGCTGGAGCTAGATGATCC
GGATGATGTGCTCCTCTACTACACACTACACACGGACAAGGCTAGCGAAG
CGTTCTACACCAGCGAAAAGCTGCCGCAGCGTCACCAACAGCAAAAGTGG
GCGGAGATTTGTACGGACGACGAGGCCTGGCGGAAAACCAATGCGCAGTG
TGTCTGTGTCAAGGTGTGGAAGCACTATTCGGCGGAAAGAAGAGATGGCC
AACCGCCTGAGGTTGAGCAAAGACATAAGGATGTTTTCGGAAGATCCCAG
TTAACGCCCAGCAGGCTGCCACGCCCTCCTGAACTACTGTTCAGCTGGGG
CGTCTACTTCTCCGGCCTTATACCTCTGTCTCCCCTCACATTGTCCCAGT
GCGGACGAAATTGCTTGGTCTTTCAATTGAATGGCGAGCAATTTGCCTCC
CCGTCGATGATAAGCGAGCAGGCCTTGCAGTCGCAGCTGCATTTGCACTA
CCAAAAGTATGCGGAGGAAGAGAAACTAGAAGAGCCGCAGGATGAGGGCA
TAAACTCGCCGGCCGTTAGTCGTAGTTCGAGTCCCGTGCTGCGAATGAGT
ACGATGCGCTATGCACAGCTGAAGTGCCAACGGCAGGAGATTCGGCGAAG
CAACAACCTCGAAAAGCTTCTCACGTTGCAACGTCTGCAACGCTTGCATC
AGCAGAAGCGGCGTCAAATGGCCGAGGTTTGCCGAGAAATAGCCCGCCTC
AGTGTACACTGTGTGACCAGGAACGAGCTGCGCTTGAAGCCCCGCACGAC
ATCGCTGTCCGGCGACTACTCCGCCCATCAGTACCATTCCATGGGCCGCG
CCCTGAGCGTGTTGCTCGCCGAGCAGCAGCAGATCGCGCCCCTCACGCTT
TATAATGCCCAGCAGCTAACTAGAAGGATAGAAGCGCTAAGCAGTCAACA
GCGGCTACTTAAAGCGGAGCGGGAAACGTTTCGCCAACGAAACGAGCGCA
CCCGTCAACTTCTGAAGGAGATGAGAGAACAGCGGGAGGCACAGCAATGG
GAGCTCCACAGCCAGCGACATCGACTGGAAAAAGAACGTCTGGAGCTACG
AACCCTGGCACCTCAACATCTGGAACAGCGCGATCAAAAAAGACAAATAG
AACGGCAGGTGGAGCGCCGAATGTCCACACTGGTGTTGGAGCTACAGGAG
ATCTATAACATCCAGAATGTGGGCGGTCGGCAATTTAGTATCTGCGGCAT
CGCCTTCCCCCACATGGAGCAATACACGAGCGAGTCACGTCAGGCGGCAA
ACGCACAGCTTCTGGATAACGTCTCGCCGCTGGCAGTGAGTGCGGCACTG
GGTTATGTTGCCCATTTGGTGCAGATGTTAGCCATCATTATGGATCGACC
TCTGAGGAACCGTATTCTGTACGAGCCATCGAAAGCAAGGATAGTGGACG
ATATCAAAGAGTTGACGTACACAACAAGAGAATTTCCTCTGTATACACGC
TCCATTTTGCCGTCGCAGCAAACAAAGTATGCCATCTACCTTTTGCGCCA
GAATGTTTCGCAGCTGTGCTTCGACATCACGGGCCAGTGCGATCTGCGAA
ACACTTTTGGCAATCTGCTGGAGCTATTCAGCACTCTTCGCTACATCGAA
CGAACGCAAAGGGATGAGGTCGACGAACGGGATGGAACTGCAGTTGGAGC
TGGCTGTGGAGAAGCACGCTTGGCAAATGGGTTGACGGCGCCGCACCTGT
CGCAATCGCACTCTTCGGTCGACATGAATCATGTGCCACTGCCGACTGGC
GTCAATGCGGTCAAGGATGCACTGCTCCAGCAGCTGTTGCCGCCGGGTGT
GAGTGAGGCACTGGCAATCGAAGGCTATGCGTCAACTCAACGCATTTGCC
GTTCGGTGGGGTCCTATTCAGATGGCGAGGATGAGTTTCGCCCGCGACTG
GAGCATAACTATTCCAATTCGGACTCCAACATAACTCTGCAAACTGAGCG
CAGCGCAAGCTTTCTAGACCAT
BO04890.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uvrag-RA | 2091 | CG6116-PA | 1..2088 | 17..2104 | 10440 | 100 | Plus |
| Uvrag-RB | 2088 | CG6116-PB | 1..2085 | 17..2104 | 10360 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uvrag-RA | 2520 | CG6116-RA | 164..2251 | 17..2104 | 10440 | 100 | Plus |
| Uvrag-RB | 2465 | CG6116-RB | 112..2196 | 17..2104 | 10360 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:08:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13287373..13288245 | 390..1262 | 4365 | 100 | Plus |
| 2L | 23513712 | 2L | 13288680..13289090 | 1582..1992 | 2055 | 100 | Plus |
| 2L | 23513712 | 2L | 13286940..13287313 | 17..390 | 1870 | 100 | Plus |
| 2L | 23513712 | 2L | 13288303..13288627 | 1257..1581 | 1625 | 100 | Plus |
| 2L | 23513712 | 2L | 13289175..13289287 | 1992..2104 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:08:57 has no hits.
BO04890.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:27 Download gff for
BO04890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6116-RA | 151..2244 | 17..2111 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:50 Download gff for
BO04890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uvrag-RA | 164..2251 | 17..2106 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:10 Download gff for
BO04890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6116-RA | 151..2238 | 17..2106 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:14 Download gff for
BO04890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uvrag-RA | 164..2251 | 17..2106 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:14 Download gff for
BO04890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13286940..13287313 | 17..390 | 100 | -> | Plus |
| 2L | 13287374..13288241 | 391..1258 | 100 | -> | Plus |
| 2L | 13288305..13288627 | 1259..1581 | 100 | -> | Plus |
| 2L | 13288680..13289090 | 1582..1992 | 100 | -> | Plus |
| 2L | 13289176..13289287 | 1993..2106 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:50 Download gff for
BO04890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13286940..13287313 | 17..390 | 100 | -> | Plus |
| arm_2L | 13287374..13288241 | 391..1258 | 100 | -> | Plus |
| arm_2L | 13288305..13288627 | 1259..1581 | 100 | -> | Plus |
| arm_2L | 13288680..13289090 | 1582..1992 | 100 | -> | Plus |
| arm_2L | 13289176..13289287 | 1993..2106 | 98 | | Plus |
BO04890.pep Sequence
Translation from 16 to 2122
> BO04890.pep
MNLRPRCRKWLPLATQQLRLRNLNRIQGFNIESWPHEKSLELDDPDDVLL
YYTLHTDKASEAFYTSEKLPQRHQQQKWAEICTDDEAWRKTNAQCVCVKV
WKHYSAERRDGQPPEVEQRHKDVFGRSQLTPSRLPRPPELLFSWGVYFSG
LIPLSPLTLSQCGRNCLVFQLNGEQFASPSMISEQALQSQLHLHYQKYAE
EEKLEEPQDEGINSPAVSRSSSPVLRMSTMRYAQLKCQRQEIRRSNNLEK
LLTLQRLQRLHQQKRRQMAEVCREIARLSVHCVTRNELRLKPRTTSLSGD
YSAHQYHSMGRALSVLLAEQQQIAPLTLYNAQQLTRRIEALSSQQRLLKA
ERETFRQRNERTRQLLKEMREQREAQQWELHSQRHRLEKERLELRTLAPQ
HLEQRDQKRQIERQVERRMSTLVLELQEIYNIQNVGGRQFSICGIAFPHM
EQYTSESRQAANAQLLDNVSPLAVSAALGYVAHLVQMLAIIMDRPLRNRI
LYEPSKARIVDDIKELTYTTREFPLYTRSILPSQQTKYAIYLLRQNVSQL
CFDITGQCDLRNTFGNLLELFSTLRYIERTQRDEVDERDGTAVGAGCGEA
RLANGLTAPHLSQSHSSVDMNHVPLPTGVNAVKDALLQQLLPPGVSEALA
IEGYASTQRICRSVGSYSDGEDEFRPRLEHNYSNSDSNITLQTERSASFL
DH
BO04890.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uvrag-PA | 696 | CG6116-PA | 1..696 | 1..696 | 3597 | 100 | Plus |
| Uvrag-PB | 695 | CG6116-PB | 1..695 | 1..696 | 3580 | 99.9 | Plus |
