Clone BO04891 Report

Search the DGRC for BO04891

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG1968-RB
Protein status:BO04891.pep: validated full length
Sequenced Size:1033

Clone Sequence Records

BO04891.3prime Sequence

458 bp (365 high quality bases) assembled on 2005-12-02

> BO04891.3prime
ATGGTCTAGAAAGCTTGCTTGCAAAACGAAGAGCACTATTTTGGTGCCAT
AATGTATGCATTTTCTTATCTTACCCTGCTTATCGCACTTTTTGAACAGC
AAAGATAGGTTCTCCTTTTCGGTGGGAATGCTCTGATGCAGCCACGCAAA
CATATCGCCAATATATCTCTTCGGATCGTGGGCATGCAGCTCAATGGGCT
TGGGGTTCCCTCCAGGACCCCCTTCCGTCAAGGCCTCAATGAACTGACGC
ACCAAAACCGCTCTTCTCGCAATGGCGTATTCGTCAATGACGTATTTGAA
TAGCACCGGACGGTCCTGCAGCCGGCTCATGGCTTCCACAATCAGCGGAC
CTATTTCGTTGTTTTCCAAACTGCGACAGTGGTTCTGAGTCCATCGGTAG
AGCCTTTCCAGAGCGCCCTCCTGATGNCATGTCATCTCCTCCATGATGTC
GATGGCTG

BO04891.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1968-PB 1002 CG1968-RB 560..999 458..19 2156 99.5 Minus
CG1968-PA 1893 CG1968-RA 560..943 458..75 1876 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1968-RB 2087 CG1968-RB 581..1020 458..19 2174 99.5 Minus
CG1968-RA 2028 CG1968-RA 581..964 458..75 1894 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9287683..9287959 295..19 1385 100 Minus
2R 25286936 2R 9287465..9287627 458..296 789 98.8 Minus
Blast to na_te.dros performed on 2015-02-13 13:35:30 has no hits.

BO04891.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:27 Download gff for BO04891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1968-PB 560..1002 18..458 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:58 Download gff for BO04891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1968-PB 560..1002 18..458 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:43:30 Download gff for BO04891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 581..1020 19..458 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:55:56 Download gff for BO04891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 581..1020 19..458 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:55:56 Download gff for BO04891.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9287465..9287627 296..458 98 -> Minus
2R 9287683..9287959 19..295 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:43:30 Download gff for BO04891.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5174970..5175132 296..458 98 -> Minus
arm_2R 5175188..5175464 19..295 100   Minus

BO04891.5prime Sequence

611 bp (566 high quality bases) assembled on 2005-12-02

> BO04891.5prime
GAAGTTATCAGTCGACATGAGCTCGACGCAGGAAAAACCGGAGGAGCTGG
ACAGGATCCAGAAGAGGGTCAACAAGATCCTTGAGGCTCGCCTGGAGTCG
GACAAGGACACATTGGATGCTCTGAGTGGTCTGTCCACTTTCTTCACGGA
GAATACGCTGCAGAATCGCAGGAATCTGCGTAGCCAGATCGAACACCGCT
CCGTGGGCATCAACGAGAACTTTCTGAAGGCCTTCCGCCAGGTGAAGCTC
TCGCTGGATGCCGTGTGCGAAGATCTGGACACGATGGCCACGTCAGTAGA
GACGATGAAATCGGATCTGGAGACCTCAAAGGCGCTCACCAAGGATCTGA
TCAAGCAGACCAACACCATGCAGCGGGAGAGGGACCGCTTGGAGGTGCAT
AAGCAGATTGCGCAAGCTTTTCTGGCTCGTTTTCAGCTAAGCGGAGCCGA
GCACCAGTTACTATATGGCGCTGCCAAAGATGCACCCATTGTGGCGGACT
TCTTTCGCGTATTGGACAGAGTACAAAGCATTCACGCTGACTGCCGGCTG
CTGATGCAGTGTGGATACCAAACAGCAGCCATCGACATCATGGAGGAGAT
GACATTGCATC

BO04891.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1968-PA 1893 CG1968-RA 1..595 17..611 2975 100 Plus
CG1968-PB 1002 CG1968-RB 1..595 17..611 2975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1968-RB 2087 CG1968-RB 22..616 17..611 2975 100 Plus
CG1968-RA 2028 CG1968-RA 22..616 17..611 2975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9286994..9287500 105..611 2535 100 Plus
2R 25286936 2R 9286848..9286938 17..107 455 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:42:42 has no hits.

BO04891.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:27 Download gff for BO04891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1968-PA 1..595 17..611 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:59 Download gff for BO04891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1968-PB 1..595 17..611 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:54 Download gff for BO04891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1968-RA 22..616 17..611 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:59 Download gff for BO04891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1968-RA 22..616 17..611 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:59 Download gff for BO04891.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9286848..9286937 17..106 100 -> Plus
2R 9286996..9287500 107..611 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:54 Download gff for BO04891.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5174353..5174442 17..106 100 -> Plus
arm_2R 5174501..5175005 107..611 100   Plus

BO04891.complete Sequence

1033 bp (1033 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ629922

> BO04891.complete
GAAGTTATCAGTCGACATGAGCTCGACGCAGGAAAAACCGGAGGAGCTGG
ACAGGATCCAGAAGAGGGTCAACAAGATCCTTGAGGCTCGCCTGGAGTCG
GACAAGGACACATTGGATGCTCTGAGTGGTCTGTCCACTTTCTTCACGGA
GAATACGCTGCAGAATCGCAGGAATCTGCGTAGCCAGATCGAACACCGCT
CCGTGGGCATCAACGAGAACTTTCTGAAGGCCTTCCGCCAGGTGAAGCTC
TCGCTGGATGCCGTGTGCGAAGATCTGGACACGATGGCCACGTCAGTAGA
GACGATGAAATCGGATCTGGAGACCTCAAAGGCGCTCACCAAGGATCTGA
TCAAGCAGACCAACACCATGCAGCGGGAGAGGGACCGCTTGGAGGTGCAT
AAGCAGATTGCGCAAGCTTTTCTGGCTCGTTTTCAGCTAAGCGGAGCCGA
GCACCAGTTACTATATGGCGCTGCCAAAGATGCACCCATTGTGGCGGACT
TCTTTCGCGTATTGGACAGAGTACAAAGCATTCACGCTGACTGCCGGCTG
CTGATGCAGTGTGGATACCAAACAGCAGCCATCGACATCATGGAGGAGAT
GACATTGCATCAGGAGGGCGCTCTGGAAAGGCTCTACCGATGGACTCAGA
ACCACTGTCGCAGTTTGGAAAACAACGAAATAGGTCCGCTGATTGTGGAA
GCCATGAGCCGGCTGCAGGACCGTCCGGTGCTATTCAAATACGTCATTGA
CGAATACGCCATTGCGAGAAGAGCGGTTTTGGTGCGTCAGTTCATTGAGG
CCTTGACGGAAGGGGGTCCTGGAGGGAACCCCAAGCCCATTGAGCTGCAT
GCCCACGATCCGAAGAGATATATTGGCGATATGTTTGCGTGGCTGCATCA
GAGCATTCCCACCGAAAAGGAGAACCTATCTTTGCTGTTCAAAAAGTGCG
ATAAGCAGGGTAAGATAAGAAAATGCATACATTATGGCACCAAAATAGTG
CTCTTCGTTTTGCAAGCAAGCTTTCTAGACCAT

BO04891.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1968-RB 1002 CG1968-PB 1..999 17..1015 4995 100 Plus
CG1968-RA 1893 CG1968-PA 1..943 17..959 4715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1968-RB 2087 CG1968-RB 22..1020 17..1015 4995 100 Plus
CG1968-RA 2028 CG1968-RA 22..964 17..959 4715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9286994..9287627 105..738 3170 100 Plus
2R 25286936 2R 9287683..9287959 739..1015 1385 100 Plus
2R 25286936 2R 9286848..9286938 17..107 455 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:10:14 has no hits.

BO04891.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:03 Download gff for BO04891.complete
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 1..1002 17..1016 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:14 Download gff for BO04891.complete
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 13..1011 17..1015 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:32 Download gff for BO04891.complete
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 22..1020 17..1017 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:06 Download gff for BO04891.complete
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 13..1011 17..1015 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:00 Download gff for BO04891.complete
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 22..1020 17..1017 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:00 Download gff for BO04891.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9286848..9286937 17..106 100 -> Plus
2R 9286996..9287627 107..738 100 -> Plus
2R 9287683..9287959 739..1017 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:32 Download gff for BO04891.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5174353..5174442 17..106 100 -> Plus
arm_2R 5174501..5175132 107..738 100 -> Plus
arm_2R 5175188..5175464 739..1017 99   Plus

BO04891.pep Sequence

Translation from 16 to 1033

> BO04891.pep
MSSTQEKPEELDRIQKRVNKILEARLESDKDTLDALSGLSTFFTENTLQN
RRNLRSQIEHRSVGINENFLKAFRQVKLSLDAVCEDLDTMATSVETMKSD
LETSKALTKDLIKQTNTMQRERDRLEVHKQIAQAFLARFQLSGAEHQLLY
GAAKDAPIVADFFRVLDRVQSIHADCRLLMQCGYQTAAIDIMEEMTLHQE
GALERLYRWTQNHCRSLENNEIGPLIVEAMSRLQDRPVLFKYVIDEYAIA
RRAVLVRQFIEALTEGGPGGNPKPIELHAHDPKRYIGDMFAWLHQSIPTE
KENLSLLFKKCDKQGKIRKCIHYGTKIVLFVLQASFLDH

BO04891.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1968-PB 333 CG1968-PB 1..333 1..333 1704 100 Plus
CG1968-PA 630 CG1968-PA 1..314 1..314 1604 100 Plus