Clone Sequence Records
BO04891.3prime Sequence
458 bp (365 high quality bases) assembled on 2005-12-02
> BO04891.3prime
ATGGTCTAGAAAGCTTGCTTGCAAAACGAAGAGCACTATTTTGGTGCCAT
AATGTATGCATTTTCTTATCTTACCCTGCTTATCGCACTTTTTGAACAGC
AAAGATAGGTTCTCCTTTTCGGTGGGAATGCTCTGATGCAGCCACGCAAA
CATATCGCCAATATATCTCTTCGGATCGTGGGCATGCAGCTCAATGGGCT
TGGGGTTCCCTCCAGGACCCCCTTCCGTCAAGGCCTCAATGAACTGACGC
ACCAAAACCGCTCTTCTCGCAATGGCGTATTCGTCAATGACGTATTTGAA
TAGCACCGGACGGTCCTGCAGCCGGCTCATGGCTTCCACAATCAGCGGAC
CTATTTCGTTGTTTTCCAAACTGCGACAGTGGTTCTGAGTCCATCGGTAG
AGCCTTTCCAGAGCGCCCTCCTGATGNCATGTCATCTCCTCCATGATGTC
GATGGCTG
BO04891.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1968-PB | 1002 | CG1968-RB | 560..999 | 458..19 | 2156 | 99.5 | Minus |
CG1968-PA | 1893 | CG1968-RA | 560..943 | 458..75 | 1876 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:35:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1968-RB | 2087 | CG1968-RB | 581..1020 | 458..19 | 2174 | 99.5 | Minus |
CG1968-RA | 2028 | CG1968-RA | 581..964 | 458..75 | 1894 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9287683..9287959 | 295..19 | 1385 | 100 | Minus |
2R | 25286936 | 2R | 9287465..9287627 | 458..296 | 789 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:35:30 has no hits.
BO04891.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:27 Download gff for
BO04891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1968-PB | 560..1002 | 18..458 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:58 Download gff for
BO04891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1968-PB | 560..1002 | 18..458 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:43:30 Download gff for
BO04891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1968-RB | 581..1020 | 19..458 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:55:56 Download gff for
BO04891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1968-RB | 581..1020 | 19..458 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:55:56 Download gff for
BO04891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9287465..9287627 | 296..458 | 98 | -> | Minus |
2R | 9287683..9287959 | 19..295 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:43:30 Download gff for
BO04891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5174970..5175132 | 296..458 | 98 | -> | Minus |
arm_2R | 5175188..5175464 | 19..295 | 100 | | Minus |
BO04891.5prime Sequence
611 bp (566 high quality bases) assembled on 2005-12-02
> BO04891.5prime
GAAGTTATCAGTCGACATGAGCTCGACGCAGGAAAAACCGGAGGAGCTGG
ACAGGATCCAGAAGAGGGTCAACAAGATCCTTGAGGCTCGCCTGGAGTCG
GACAAGGACACATTGGATGCTCTGAGTGGTCTGTCCACTTTCTTCACGGA
GAATACGCTGCAGAATCGCAGGAATCTGCGTAGCCAGATCGAACACCGCT
CCGTGGGCATCAACGAGAACTTTCTGAAGGCCTTCCGCCAGGTGAAGCTC
TCGCTGGATGCCGTGTGCGAAGATCTGGACACGATGGCCACGTCAGTAGA
GACGATGAAATCGGATCTGGAGACCTCAAAGGCGCTCACCAAGGATCTGA
TCAAGCAGACCAACACCATGCAGCGGGAGAGGGACCGCTTGGAGGTGCAT
AAGCAGATTGCGCAAGCTTTTCTGGCTCGTTTTCAGCTAAGCGGAGCCGA
GCACCAGTTACTATATGGCGCTGCCAAAGATGCACCCATTGTGGCGGACT
TCTTTCGCGTATTGGACAGAGTACAAAGCATTCACGCTGACTGCCGGCTG
CTGATGCAGTGTGGATACCAAACAGCAGCCATCGACATCATGGAGGAGAT
GACATTGCATC
BO04891.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1968-PA | 1893 | CG1968-RA | 1..595 | 17..611 | 2975 | 100 | Plus |
CG1968-PB | 1002 | CG1968-RB | 1..595 | 17..611 | 2975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1968-RB | 2087 | CG1968-RB | 22..616 | 17..611 | 2975 | 100 | Plus |
CG1968-RA | 2028 | CG1968-RA | 22..616 | 17..611 | 2975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:42:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9286994..9287500 | 105..611 | 2535 | 100 | Plus |
2R | 25286936 | 2R | 9286848..9286938 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:42:42 has no hits.
BO04891.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:27 Download gff for
BO04891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1968-PA | 1..595 | 17..611 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:59 Download gff for
BO04891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1968-PB | 1..595 | 17..611 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:54 Download gff for
BO04891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1968-RA | 22..616 | 17..611 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:59 Download gff for
BO04891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1968-RA | 22..616 | 17..611 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:59 Download gff for
BO04891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9286848..9286937 | 17..106 | 100 | -> | Plus |
2R | 9286996..9287500 | 107..611 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:54 Download gff for
BO04891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5174353..5174442 | 17..106 | 100 | -> | Plus |
arm_2R | 5174501..5175005 | 107..611 | 100 | | Plus |
BO04891.complete Sequence
1033 bp (1033 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629922
> BO04891.complete
GAAGTTATCAGTCGACATGAGCTCGACGCAGGAAAAACCGGAGGAGCTGG
ACAGGATCCAGAAGAGGGTCAACAAGATCCTTGAGGCTCGCCTGGAGTCG
GACAAGGACACATTGGATGCTCTGAGTGGTCTGTCCACTTTCTTCACGGA
GAATACGCTGCAGAATCGCAGGAATCTGCGTAGCCAGATCGAACACCGCT
CCGTGGGCATCAACGAGAACTTTCTGAAGGCCTTCCGCCAGGTGAAGCTC
TCGCTGGATGCCGTGTGCGAAGATCTGGACACGATGGCCACGTCAGTAGA
GACGATGAAATCGGATCTGGAGACCTCAAAGGCGCTCACCAAGGATCTGA
TCAAGCAGACCAACACCATGCAGCGGGAGAGGGACCGCTTGGAGGTGCAT
AAGCAGATTGCGCAAGCTTTTCTGGCTCGTTTTCAGCTAAGCGGAGCCGA
GCACCAGTTACTATATGGCGCTGCCAAAGATGCACCCATTGTGGCGGACT
TCTTTCGCGTATTGGACAGAGTACAAAGCATTCACGCTGACTGCCGGCTG
CTGATGCAGTGTGGATACCAAACAGCAGCCATCGACATCATGGAGGAGAT
GACATTGCATCAGGAGGGCGCTCTGGAAAGGCTCTACCGATGGACTCAGA
ACCACTGTCGCAGTTTGGAAAACAACGAAATAGGTCCGCTGATTGTGGAA
GCCATGAGCCGGCTGCAGGACCGTCCGGTGCTATTCAAATACGTCATTGA
CGAATACGCCATTGCGAGAAGAGCGGTTTTGGTGCGTCAGTTCATTGAGG
CCTTGACGGAAGGGGGTCCTGGAGGGAACCCCAAGCCCATTGAGCTGCAT
GCCCACGATCCGAAGAGATATATTGGCGATATGTTTGCGTGGCTGCATCA
GAGCATTCCCACCGAAAAGGAGAACCTATCTTTGCTGTTCAAAAAGTGCG
ATAAGCAGGGTAAGATAAGAAAATGCATACATTATGGCACCAAAATAGTG
CTCTTCGTTTTGCAAGCAAGCTTTCTAGACCAT
BO04891.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1968-RB | 1002 | CG1968-PB | 1..999 | 17..1015 | 4995 | 100 | Plus |
CG1968-RA | 1893 | CG1968-PA | 1..943 | 17..959 | 4715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1968-RB | 2087 | CG1968-RB | 22..1020 | 17..1015 | 4995 | 100 | Plus |
CG1968-RA | 2028 | CG1968-RA | 22..964 | 17..959 | 4715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9286994..9287627 | 105..738 | 3170 | 100 | Plus |
2R | 25286936 | 2R | 9287683..9287959 | 739..1015 | 1385 | 100 | Plus |
2R | 25286936 | 2R | 9286848..9286938 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:10:14 has no hits.
BO04891.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:03 Download gff for
BO04891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1968-RB | 1..1002 | 17..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:14 Download gff for
BO04891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1968-RB | 13..1011 | 17..1015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:32 Download gff for
BO04891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1968-RB | 22..1020 | 17..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:06 Download gff for
BO04891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1968-RB | 13..1011 | 17..1015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:00 Download gff for
BO04891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1968-RB | 22..1020 | 17..1017 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:00 Download gff for
BO04891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9286848..9286937 | 17..106 | 100 | -> | Plus |
2R | 9286996..9287627 | 107..738 | 100 | -> | Plus |
2R | 9287683..9287959 | 739..1017 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:32 Download gff for
BO04891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5174353..5174442 | 17..106 | 100 | -> | Plus |
arm_2R | 5174501..5175132 | 107..738 | 100 | -> | Plus |
arm_2R | 5175188..5175464 | 739..1017 | 99 | | Plus |
BO04891.pep Sequence
Translation from 16 to 1033
> BO04891.pep
MSSTQEKPEELDRIQKRVNKILEARLESDKDTLDALSGLSTFFTENTLQN
RRNLRSQIEHRSVGINENFLKAFRQVKLSLDAVCEDLDTMATSVETMKSD
LETSKALTKDLIKQTNTMQRERDRLEVHKQIAQAFLARFQLSGAEHQLLY
GAAKDAPIVADFFRVLDRVQSIHADCRLLMQCGYQTAAIDIMEEMTLHQE
GALERLYRWTQNHCRSLENNEIGPLIVEAMSRLQDRPVLFKYVIDEYAIA
RRAVLVRQFIEALTEGGPGGNPKPIELHAHDPKRYIGDMFAWLHQSIPTE
KENLSLLFKKCDKQGKIRKCIHYGTKIVLFVLQASFLDH
BO04891.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1968-PB | 333 | CG1968-PB | 1..333 | 1..333 | 1704 | 100 | Plus |
CG1968-PA | 630 | CG1968-PA | 1..314 | 1..314 | 1604 | 100 | Plus |