Clone Sequence Records
BO04892.3prime Sequence
800 bp (799 high quality bases) assembled on 2005-12-02
> BO04892.3prime
ATGGTCTAGAAAGCTTGCTGAAAGTTTTTTCAGTTCTTTGGTTGGACATT
CAGCTACAATAGGTTGACTCCCGGAACTGCTGTCCTCTTTCGTTGTCGGA
GTCTCAGCGGAGTATTCTTCATGCGCGAGTTGCATAAAAACCAAATCTTC
TTTTGCCGGAAAATCAGCGAGTACTGTAATGCCAATGTTGTTATCCGGCA
GCGCAGGCGTTTCCTCGTGGTACCCAAACCAATAGATTATCATTCCAGGA
CCAAAACGATTGCAGTAGCTTTGCAGCTGCTGTTGGATGTTCGACTTGTG
TCCCTTGGTGTCCCCAAAATTGGCCTTGCTCTCGATCCAGTTGATCACAG
AGCCTTTGTAAAGAAATGGCAGGATCATCTTGATGTCCGGCGTCTTGTCA
TATCCCATGCGTCGCAAATCTTTCTCGTCGTAGAAATGGATACCCGCCTC
CTTAGCCAGATTCTTAAGCTTAAGCTCGTACTCCTCGCCAACTATGCGGC
GTCGCAGGTCCGTTATGGATCCCTCTTGATTGTCGCTGACTATGCACTGC
TGCACATTGGCCGCCAGCTTGGGATCGTCGATAAGATGCGGATGCCTAAG
AAGCTGTGAGATGTGCGATCGATGCCGATCCTTGTACTTCTCCTGCAGCA
ACATCCTGCAGAGAGCCACCGGGTTCAGTGCTTCGGCACAAGCCATTCGG
ATCAGTAGGGCATTGTCGTAGTATAGGTTTTTCTGCTCCTCGTAGGCTTT
GAGAAGCCTTTTCCCGCGCTGATCCTGCTTCCAGTGACCACGCGACCGGT
BO04892.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12713-PA | 990 | CG12713-RA | 206..987 | 800..19 | 3910 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12713-RA | 1351 | CG12713-RA | 270..1051 | 800..19 | 3910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:24:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15832856..15833344 | 745..257 | 2445 | 100 | Minus |
3L | 28110227 | 3L | 15833409..15833647 | 257..19 | 1195 | 100 | Minus |
3L | 28110227 | 3L | 15832733..15832787 | 800..746 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:24:55 has no hits.
BO04892.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:28 Download gff for
BO04892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-PA | 206..990 | 16..800 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:30:01 Download gff for
BO04892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-PA | 206..990 | 16..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:03 Download gff for
BO04892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 270..1058 | 12..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:40:16 Download gff for
BO04892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 270..1058 | 12..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:40:16 Download gff for
BO04892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15832733..15832787 | 746..800 | 100 | -> | Minus |
3L | 15832856..15833344 | 257..745 | 100 | -> | Minus |
3L | 15833410..15833654 | 12..256 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:03 Download gff for
BO04892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15825833..15825887 | 746..800 | 100 | -> | Minus |
arm_3L | 15825956..15826444 | 257..745 | 100 | -> | Minus |
arm_3L | 15826510..15826754 | 12..256 | 98 | | Minus |
BO04892.5prime Sequence
893 bp (826 high quality bases) assembled on 2005-11-29
> BO04892.5prime
GAAGTTATCAGTCGACATGATGTCCCAAATTCCGGATTTGGCCGGCGGAA
ATGGGCAACAGAAGCGAAAGATTCTGAGCGGCGGCGAATACAATAAGATT
TGCCGGTTTATCAACGGCTTCCACGGCTTGGCCATCGACTGCGAGTTCGA
GTTGAGGAATCGCTTCTTCAGGGACGTGGAGCCAATGGCATTGACATGCA
TCCTGCAGTCGGAGCTTTTTAACCGGTCGCGTGGTCACTGGAAGCAGGAT
CAGCGCGGGAAAAGGCTTCTCAAAGCCTACGAGGAGCAGAAAAACCTATA
CTACGACAATGCCCTACTGATCCGAATGGCTTGTGCCGAAGCACTGAACC
CGGTGGCTCTCTGCAGGATGTTGCTGCAGGAGAAGTACAAGGATCGGCAT
CGATCGCACATCTCACAGCTTCTTAGGCATCCGCATCTTATCGACGATCC
CAAGCTGGCGGCCAATGTGCAGCAGTGCATAGTCAGCGACAATCAAGAGG
GATCCATAACGGACCTGCGACGCCGCATAGTTGGCGAGGAGTACGAGCTT
AAGCTTAAGAATCTGGCTAAGGAGGCGGGTATCCATTTCTACGACGAGAA
AGATTTGCGACGCATGGGATATGACAAGACGCCGGACATCAAGATGATCC
TGCCATTTCTTTACAAAGGCTCTGTGATCAACTGGATCGAGAGCAAGGCC
AATTTTGGGGACACCAAGGGACACAAGTCGAACATCCAACAGCAGCTGCA
AAGCTACTGCAATCGTTTTGGTCCTGGAATGATAATCTATTGGTTTGGGT
ACCACGAGGAAACGCCTGCGCTGCCGGATAACACATTGGCATTACAGTAC
TCGCTGATTTTCCGGCAAAAGAAGATTTGGTTTTTATGCAACT
BO04892.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12713-PA | 990 | CG12713-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
CG12713-PA | 990 | CG12713-RA | 818..878 | 833..893 | 305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:13:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12713-RA | 1351 | CG12713-RA | 65..942 | 17..893 | 4365 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15832856..15833344 | 277..765 | 2445 | 100 | Plus |
3L | 28110227 | 3L | 15832528..15832787 | 17..276 | 1300 | 100 | Plus |
3L | 28110227 | 3L | 15833409..15833538 | 765..893 | 600 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:13:07 has no hits.
BO04892.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:29 Download gff for
BO04892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-PA | 1..878 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:30:02 Download gff for
BO04892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-PA | 1..878 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:32 Download gff for
BO04892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 62..942 | 14..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:53 Download gff for
BO04892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 62..942 | 14..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:12:53 Download gff for
BO04892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15832525..15832787 | 14..276 | 99 | -> | Plus |
3L | 15832856..15833344 | 277..765 | 100 | -> | Plus |
3L | 15833410..15833538 | 766..893 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:32 Download gff for
BO04892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15825625..15825887 | 14..276 | 99 | -> | Plus |
arm_3L | 15825956..15826444 | 277..765 | 100 | -> | Plus |
arm_3L | 15826510..15826638 | 766..893 | 99 | | Plus |
BO04892.complete Sequence
1021 bp (1021 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629923
> BO04892.complete
GAAGTTATCAGTCGACATGATGTCCCAAATTCCGGATTTGGCCGGCGGAA
ATGGGCAACAGAAGCGAAAGATTCTGAGCGGCGGCGAATACAATAAGATT
TGCCGGTTTATCAACGGCTTCCACGGCTTGGCCATCGACTGCGAGTTCGA
GTTGAGGAATCGCTTCTTCAGGGACGTGGAGCCAATGGCATTGACATGCA
TCCTGCAGTCGGAGCTTTTTAACCGGTCGCGTGGTCACTGGAAGCAGGAT
CAGCGCGGGAAAAGGCTTCTCAAAGCCTACGAGGAGCAGAAAAACCTATA
CTACGACAATGCCCTACTGATCCGAATGGCTTGTGCCGAAGCACTGAACC
CGGTGGCTCTCTGCAGGATGTTGCTGCAGGAGAAGTACAAGGATCGGCAT
CGATCGCACATCTCACAGCTTCTTAGGCATCCGCATCTTATCGACGATCC
CAAGCTGGCGGCCAATGTGCAGCAGTGCATAGTCAGCGACAATCAAGAGG
GATCCATAACGGACCTGCGACGCCGCATAGTTGGCGAGGAGTACGAGCTT
AAGCTTAAGAATCTGGCTAAGGAGGCGGGTATCCATTTCTACGACGAGAA
AGATTTGCGACGCATGGGATATGACAAGACGCCGGACATCAAGATGATCC
TGCCATTTCTTTACAAAGGCTCTGTGATCAACTGGATCGAGAGCAAGGCC
AATTTTGGGGACACCAAGGGACACAAGTCGAACATCCAACAGCAGCTGCA
AAGCTACTGCAATCGTTTTGGTCCTGGAATGATAATCTATTGGTTTGGGT
ACCACGAGGAAACGCCTGCGCTGCCGGATAACAACATTGGCATTACAGTA
CTCGCTGATTTTCCGGCAAAAGAAGATTTGGTTTTTATGCAACTCGCGCA
TGAAGAATACTCCGCTGAGACTCCGACAACGAAAGAGGACAGCAGTTCCG
GGAGTCAACCTATTGTAGCTGAATGTCCAACCAAAGAACTGAAAAAACTT
TCAGCAAGCTTTCTAGACCAT
BO04892.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12713-RA | 990 | CG12713-PA | 1..987 | 17..1003 | 4935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12713-RA | 1351 | CG12713-RA | 65..1051 | 17..1003 | 4935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15832856..15833344 | 277..765 | 2445 | 100 | Plus |
3L | 28110227 | 3L | 15832528..15832787 | 17..276 | 1300 | 100 | Plus |
3L | 28110227 | 3L | 15833409..15833647 | 765..1003 | 1195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:18:22 has no hits.
BO04892.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:35 Download gff for
BO04892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 1..990 | 17..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:09 Download gff for
BO04892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 66..1062 | 14..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:33 Download gff for
BO04892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 65..1051 | 17..1005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:35 Download gff for
BO04892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 66..1062 | 14..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:40 Download gff for
BO04892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 65..1051 | 17..1005 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:40 Download gff for
BO04892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15832528..15832787 | 17..276 | 100 | -> | Plus |
3L | 15832856..15833344 | 277..765 | 100 | -> | Plus |
3L | 15833410..15833647 | 766..1005 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:33 Download gff for
BO04892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15825628..15825887 | 17..276 | 100 | -> | Plus |
arm_3L | 15825956..15826444 | 277..765 | 100 | -> | Plus |
arm_3L | 15826510..15826747 | 766..1005 | 99 | | Plus |
BO04892.pep Sequence
Translation from 16 to 1021
> BO04892.pep
MMSQIPDLAGGNGQQKRKILSGGEYNKICRFINGFHGLAIDCEFELRNRF
FRDVEPMALTCILQSELFNRSRGHWKQDQRGKRLLKAYEEQKNLYYDNAL
LIRMACAEALNPVALCRMLLQEKYKDRHRSHISQLLRHPHLIDDPKLAAN
VQQCIVSDNQEGSITDLRRRIVGEEYELKLKNLAKEAGIHFYDEKDLRRM
GYDKTPDIKMILPFLYKGSVINWIESKANFGDTKGHKSNIQQQLQSYCNR
FGPGMIIYWFGYHEETPALPDNNIGITVLADFPAKEDLVFMQLAHEEYSA
ETPTTKEDSSSGSQPIVAECPTKELKKLSASFLDH
BO04892.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12713-PA | 329 | CG12713-PA | 1..329 | 1..329 | 1745 | 100 | Plus |