Clone BO04892 Report

Search the DGRC for BO04892

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG12713-RA
Protein status:BO04892.pep: validated full length
Sequenced Size:1021

Clone Sequence Records

BO04892.3prime Sequence

800 bp (799 high quality bases) assembled on 2005-12-02

> BO04892.3prime
ATGGTCTAGAAAGCTTGCTGAAAGTTTTTTCAGTTCTTTGGTTGGACATT
CAGCTACAATAGGTTGACTCCCGGAACTGCTGTCCTCTTTCGTTGTCGGA
GTCTCAGCGGAGTATTCTTCATGCGCGAGTTGCATAAAAACCAAATCTTC
TTTTGCCGGAAAATCAGCGAGTACTGTAATGCCAATGTTGTTATCCGGCA
GCGCAGGCGTTTCCTCGTGGTACCCAAACCAATAGATTATCATTCCAGGA
CCAAAACGATTGCAGTAGCTTTGCAGCTGCTGTTGGATGTTCGACTTGTG
TCCCTTGGTGTCCCCAAAATTGGCCTTGCTCTCGATCCAGTTGATCACAG
AGCCTTTGTAAAGAAATGGCAGGATCATCTTGATGTCCGGCGTCTTGTCA
TATCCCATGCGTCGCAAATCTTTCTCGTCGTAGAAATGGATACCCGCCTC
CTTAGCCAGATTCTTAAGCTTAAGCTCGTACTCCTCGCCAACTATGCGGC
GTCGCAGGTCCGTTATGGATCCCTCTTGATTGTCGCTGACTATGCACTGC
TGCACATTGGCCGCCAGCTTGGGATCGTCGATAAGATGCGGATGCCTAAG
AAGCTGTGAGATGTGCGATCGATGCCGATCCTTGTACTTCTCCTGCAGCA
ACATCCTGCAGAGAGCCACCGGGTTCAGTGCTTCGGCACAAGCCATTCGG
ATCAGTAGGGCATTGTCGTAGTATAGGTTTTTCTGCTCCTCGTAGGCTTT
GAGAAGCCTTTTCCCGCGCTGATCCTGCTTCCAGTGACCACGCGACCGGT

BO04892.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-PA 990 CG12713-RA 206..987 800..19 3910 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-RA 1351 CG12713-RA 270..1051 800..19 3910 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15832856..15833344 745..257 2445 100 Minus
3L 28110227 3L 15833409..15833647 257..19 1195 100 Minus
3L 28110227 3L 15832733..15832787 800..746 275 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:24:55 has no hits.

BO04892.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:28 Download gff for BO04892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12713-PA 206..990 16..800 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:30:01 Download gff for BO04892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12713-PA 206..990 16..800 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:03 Download gff for BO04892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 270..1058 12..800 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:40:16 Download gff for BO04892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 270..1058 12..800 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:40:16 Download gff for BO04892.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15832733..15832787 746..800 100 -> Minus
3L 15832856..15833344 257..745 100 -> Minus
3L 15833410..15833654 12..256 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:03 Download gff for BO04892.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15825833..15825887 746..800 100 -> Minus
arm_3L 15825956..15826444 257..745 100 -> Minus
arm_3L 15826510..15826754 12..256 98   Minus

BO04892.5prime Sequence

893 bp (826 high quality bases) assembled on 2005-11-29

> BO04892.5prime
GAAGTTATCAGTCGACATGATGTCCCAAATTCCGGATTTGGCCGGCGGAA
ATGGGCAACAGAAGCGAAAGATTCTGAGCGGCGGCGAATACAATAAGATT
TGCCGGTTTATCAACGGCTTCCACGGCTTGGCCATCGACTGCGAGTTCGA
GTTGAGGAATCGCTTCTTCAGGGACGTGGAGCCAATGGCATTGACATGCA
TCCTGCAGTCGGAGCTTTTTAACCGGTCGCGTGGTCACTGGAAGCAGGAT
CAGCGCGGGAAAAGGCTTCTCAAAGCCTACGAGGAGCAGAAAAACCTATA
CTACGACAATGCCCTACTGATCCGAATGGCTTGTGCCGAAGCACTGAACC
CGGTGGCTCTCTGCAGGATGTTGCTGCAGGAGAAGTACAAGGATCGGCAT
CGATCGCACATCTCACAGCTTCTTAGGCATCCGCATCTTATCGACGATCC
CAAGCTGGCGGCCAATGTGCAGCAGTGCATAGTCAGCGACAATCAAGAGG
GATCCATAACGGACCTGCGACGCCGCATAGTTGGCGAGGAGTACGAGCTT
AAGCTTAAGAATCTGGCTAAGGAGGCGGGTATCCATTTCTACGACGAGAA
AGATTTGCGACGCATGGGATATGACAAGACGCCGGACATCAAGATGATCC
TGCCATTTCTTTACAAAGGCTCTGTGATCAACTGGATCGAGAGCAAGGCC
AATTTTGGGGACACCAAGGGACACAAGTCGAACATCCAACAGCAGCTGCA
AAGCTACTGCAATCGTTTTGGTCCTGGAATGATAATCTATTGGTTTGGGT
ACCACGAGGAAACGCCTGCGCTGCCGGATAACACATTGGCATTACAGTAC
TCGCTGATTTTCCGGCAAAAGAAGATTTGGTTTTTATGCAACT

BO04892.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-PA 990 CG12713-RA 1..817 17..833 4085 100 Plus
CG12713-PA 990 CG12713-RA 818..878 833..893 305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-RA 1351 CG12713-RA 65..942 17..893 4365 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15832856..15833344 277..765 2445 100 Plus
3L 28110227 3L 15832528..15832787 17..276 1300 100 Plus
3L 28110227 3L 15833409..15833538 765..893 600 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 01:13:07 has no hits.

BO04892.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:29 Download gff for BO04892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12713-PA 1..878 17..893 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:30:02 Download gff for BO04892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12713-PA 1..878 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:32 Download gff for BO04892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 62..942 14..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:53 Download gff for BO04892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 62..942 14..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:12:53 Download gff for BO04892.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15832525..15832787 14..276 99 -> Plus
3L 15832856..15833344 277..765 100 -> Plus
3L 15833410..15833538 766..893 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:32 Download gff for BO04892.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15825625..15825887 14..276 99 -> Plus
arm_3L 15825956..15826444 277..765 100 -> Plus
arm_3L 15826510..15826638 766..893 99   Plus

BO04892.complete Sequence

1021 bp (1021 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629923

> BO04892.complete
GAAGTTATCAGTCGACATGATGTCCCAAATTCCGGATTTGGCCGGCGGAA
ATGGGCAACAGAAGCGAAAGATTCTGAGCGGCGGCGAATACAATAAGATT
TGCCGGTTTATCAACGGCTTCCACGGCTTGGCCATCGACTGCGAGTTCGA
GTTGAGGAATCGCTTCTTCAGGGACGTGGAGCCAATGGCATTGACATGCA
TCCTGCAGTCGGAGCTTTTTAACCGGTCGCGTGGTCACTGGAAGCAGGAT
CAGCGCGGGAAAAGGCTTCTCAAAGCCTACGAGGAGCAGAAAAACCTATA
CTACGACAATGCCCTACTGATCCGAATGGCTTGTGCCGAAGCACTGAACC
CGGTGGCTCTCTGCAGGATGTTGCTGCAGGAGAAGTACAAGGATCGGCAT
CGATCGCACATCTCACAGCTTCTTAGGCATCCGCATCTTATCGACGATCC
CAAGCTGGCGGCCAATGTGCAGCAGTGCATAGTCAGCGACAATCAAGAGG
GATCCATAACGGACCTGCGACGCCGCATAGTTGGCGAGGAGTACGAGCTT
AAGCTTAAGAATCTGGCTAAGGAGGCGGGTATCCATTTCTACGACGAGAA
AGATTTGCGACGCATGGGATATGACAAGACGCCGGACATCAAGATGATCC
TGCCATTTCTTTACAAAGGCTCTGTGATCAACTGGATCGAGAGCAAGGCC
AATTTTGGGGACACCAAGGGACACAAGTCGAACATCCAACAGCAGCTGCA
AAGCTACTGCAATCGTTTTGGTCCTGGAATGATAATCTATTGGTTTGGGT
ACCACGAGGAAACGCCTGCGCTGCCGGATAACAACATTGGCATTACAGTA
CTCGCTGATTTTCCGGCAAAAGAAGATTTGGTTTTTATGCAACTCGCGCA
TGAAGAATACTCCGCTGAGACTCCGACAACGAAAGAGGACAGCAGTTCCG
GGAGTCAACCTATTGTAGCTGAATGTCCAACCAAAGAACTGAAAAAACTT
TCAGCAAGCTTTCTAGACCAT

BO04892.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-RA 990 CG12713-PA 1..987 17..1003 4935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-RA 1351 CG12713-RA 65..1051 17..1003 4935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15832856..15833344 277..765 2445 100 Plus
3L 28110227 3L 15832528..15832787 17..276 1300 100 Plus
3L 28110227 3L 15833409..15833647 765..1003 1195 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:18:22 has no hits.

BO04892.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:35 Download gff for BO04892.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 1..990 17..1006 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:09 Download gff for BO04892.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 66..1062 14..1010 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:33 Download gff for BO04892.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 65..1051 17..1005 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:35 Download gff for BO04892.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 66..1062 14..1010 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:40 Download gff for BO04892.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 65..1051 17..1005 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:40 Download gff for BO04892.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15832528..15832787 17..276 100 -> Plus
3L 15832856..15833344 277..765 100 -> Plus
3L 15833410..15833647 766..1005 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:33 Download gff for BO04892.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15825628..15825887 17..276 100 -> Plus
arm_3L 15825956..15826444 277..765 100 -> Plus
arm_3L 15826510..15826747 766..1005 99   Plus

BO04892.pep Sequence

Translation from 16 to 1021

> BO04892.pep
MMSQIPDLAGGNGQQKRKILSGGEYNKICRFINGFHGLAIDCEFELRNRF
FRDVEPMALTCILQSELFNRSRGHWKQDQRGKRLLKAYEEQKNLYYDNAL
LIRMACAEALNPVALCRMLLQEKYKDRHRSHISQLLRHPHLIDDPKLAAN
VQQCIVSDNQEGSITDLRRRIVGEEYELKLKNLAKEAGIHFYDEKDLRRM
GYDKTPDIKMILPFLYKGSVINWIESKANFGDTKGHKSNIQQQLQSYCNR
FGPGMIIYWFGYHEETPALPDNNIGITVLADFPAKEDLVFMQLAHEEYSA
ETPTTKEDSSSGSQPIVAECPTKELKKLSASFLDH

BO04892.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-PA 329 CG12713-PA 1..329 1..329 1745 100 Plus