Clone Sequence Records
BO04893.3prime Sequence
956 bp (851 high quality bases) assembled on 2005-12-02
> BO04893.3prime
ATGGTCTAGAAAGCTTGCAGCCAGAGTGGGAAACTGACGCTCATCGTTGA
CCTTGGGAGCGGTGTTCTGTTGTCGCTCAAAACGCTTATTCGGCCCTGGA
CCGCTGTTCTGATTGTTGTTCTGGTTGTTTCCCGGACCGCGACGATCGAT
GGGTGGCCTTTGATTTTGAGCGGATGAACCGCCGCCCTCGTTATTATGCT
GCTGGCCATCCCGTGGGCCACGGTTTCCACCCTCACGATTATCTCGGCCG
CCCTCACGATTGCCGCCATCGCGGTTGCCACCCTCGCTGCGTGGTCCGCC
TCCAAATCCACCGGGTCTGGGGCCTCCACGGCCACCGCGTCCACCGAAAC
CGCCAGGTCCGCCACGACGACCATCGTTGAAATTGAACTGAATGTCCAGG
ACGCGCTGTTGCCTGCCCACACGCTGTGGATAAAGGGCAGGGTCGTACTC
GAGCTCCTCTTCGCTGTCGTTCTCCTTCTTCTTGTTGCTAGTTAGGACGA
CCATTTTCTTCCATTGTGTGGTGTCCTCACCTTCTCCAGCCTTGCGGATA
TTAAAGGTTGGCTTGATGCGCTGTCCTTGCTGTGCCTTCCACTCGTCCAA
GGTCAGCTCTTTGGCTTCCTCCTCGGCGGTAGCCTGCTCGTTTTGTGGTT
CAGTGCCAGATTCATCGGCCTTGGCGCCGCCCTCGGCATTGGTCACATTG
GTTTCGCTTTCGTTCTTGTTCACATCATCAATAGCCTCCTTGACCGATCC
CCAGTTGTGGGAGCCAGCTCCATCGCGTTTGTCAATTGACTTCACACCAG
TTCTATCGGAACCCGACTGGCGGTCGAACTCGCGCTTCCTGTTCTGGCCA
TCGTAGTTGCGGTTCTGACGCTGGGGACGATCTCCGCCAGCACCTGGGCC
TCCACCTGGTCCGCGGTAAGGTCGCGACTGCTGGCCATCGGGTGCTCCGA
CGTTTT
BO04893.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4170-PD | 1473 | vig-RD | 533..1470 | 956..19 | 4690 | 100 | Minus |
| CG4170-PC | 1473 | vig-RC | 533..1470 | 956..19 | 4690 | 100 | Minus |
| CG4170-PA | 1473 | vig-RA | 533..1470 | 956..19 | 4690 | 100 | Minus |
| CG4170-PB | 1473 | vig-RB | 533..1470 | 956..19 | 4690 | 100 | Minus |
| CG11844-PC | 1239 | CG11844-RC | 433..497 | 837..773 | 200 | 92.3 | Minus |
| CG11844-PA | 1239 | CG11844-RA | 433..497 | 837..773 | 200 | 92.3 | Minus |
| CG11844-PB | 1332 | CG11844-RB | 526..590 | 837..773 | 200 | 92.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:43:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vig-RB | 3164 | CG4170-RB | 721..1658 | 956..19 | 4690 | 100 | Minus |
| vig-RA | 1918 | CG4170-RA | 758..1695 | 956..19 | 4690 | 100 | Minus |
| vig-RC | 1838 | CG4170-RC | 678..1615 | 956..19 | 4690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15064437..15064950 | 19..532 | 2570 | 100 | Plus |
| 2L | 23513712 | 2L | 15065187..15065457 | 528..798 | 1355 | 100 | Plus |
| 2L | 23513712 | 2L | 15066934..15067095 | 795..956 | 810 | 100 | Plus |
| Y | 3667352 | Y | 3023805..3023918 | 484..371 | 240 | 80.7 | Minus |
| 3R | 32079331 | 3R | 25124888..25125001 | 484..371 | 240 | 80.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:43:02 has no hits.
BO04893.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:30 Download gff for
BO04893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-PA | 533..1473 | 15..956 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:30:04 Download gff for
BO04893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4170-PC | 533..1473 | 15..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:56 Download gff for
BO04893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-RC | 678..1618 | 15..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:01 Download gff for
BO04893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-RC | 678..1618 | 15..956 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:01 Download gff for
BO04893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15064433..15064948 | 15..530 | 99 | <- | Plus |
| 2L | 15065190..15065456 | 531..797 | 100 | <- | Plus |
| 2L | 15066937..15067095 | 798..956 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:56 Download gff for
BO04893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15064433..15064948 | 15..530 | 99 | <- | Plus |
| arm_2L | 15065190..15065456 | 531..797 | 100 | <- | Plus |
| arm_2L | 15066937..15067095 | 798..956 | 100 | | Plus |
BO04893.5prime Sequence
907 bp (832 high quality bases) assembled on 2005-12-02
> BO04893.5prime
GAAGTTATCAGTCGACATGGACAGCGCCGGTAAAAATCGTTATGAACTTT
TGTTCATGGACGACGATGTCAGCGATCCATTAGATAATCTTGTGGCGCCG
ACGGCCGCTGCTGCCGCAGCAGCAGCTGGCAAGAAGAAGCAACCGTCAGC
TGCTGCTGCAGCGGCCACCAAAACGACCGCCAACAAGGTGGCCAACAGCA
ATAACAAGGCGAACGCAGGATCCAATATTGGTGGACCCAATGCCAAGAAA
CCAAATCAGGCCGAAAAGGAGAACAAGCCCAATAATGCGTTAAACAAAAC
CGATGGCAAGAAGTTCACTCCATCGGCCGACAACAAACAGCAGCAGTTCA
ATAATAACGCCAGCAGCAATTACAAACAACAGGGTGCTCCACGGCAAGGA
GGTGGCGCCAACCGAACACGTGAATTTGGTAGCGGTCAAGGACAGGGTCA
AGGACAAGGTGGCCAGCAGCAGCGCAGCGTAAACTTCCGTCAACAGAATG
GCAATGCCGAGACTCGTGAGCAGCGCAACAATCGCCGCAATGTCCGCGAA
AACGTCGGAGCACCCGATGGCCAGCAGTCGCGACCTTACCGCGGACCAGG
TGGAGGCCCAGGTGCTGGCGGAGATCGTCCCCAGCGTCAGAACCGCAACT
ACGATGGCCAGAACAGGAAGCGCGAGTTCGACCGCCAGTCGGGTTCCGAT
AGAACTGGTGTGAAGTCAATTGACAAACGCGATGGAGCTGGCTCCCACAA
CTGGGGATCGGTCAAGGAGGCTATTGATGATGTGAACAAGAACGAAAGCG
AAACCATGTGACCAATGCCGAGGGCGGCGCCAAGGCCGATGAATCTGGCA
CTGAACCACAAAACGAGCAGGCTACCGCCGAGGAGGAAGCCAAAGAGCTG
ACCTTGG
BO04893.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4170-PD | 1473 | vig-RD | 1..790 | 17..806 | 3950 | 100 | Plus |
| CG4170-PC | 1473 | vig-RC | 1..790 | 17..806 | 3950 | 100 | Plus |
| CG4170-PA | 1473 | vig-RA | 1..790 | 17..806 | 3950 | 100 | Plus |
| CG4170-PB | 1473 | vig-RB | 1..790 | 17..806 | 3950 | 100 | Plus |
| CG4170-PD | 1473 | vig-RD | 791..892 | 806..907 | 510 | 100 | Plus |
| CG4170-PC | 1473 | vig-RC | 791..892 | 806..907 | 510 | 100 | Plus |
| CG4170-PA | 1473 | vig-RA | 791..892 | 806..907 | 510 | 100 | Plus |
| CG4170-PB | 1473 | vig-RB | 791..892 | 806..907 | 510 | 100 | Plus |
| CG11844-PC | 1239 | CG11844-RC | 433..497 | 668..732 | 200 | 92.3 | Plus |
| CG11844-PA | 1239 | CG11844-RA | 433..497 | 668..732 | 200 | 92.3 | Plus |
| CG11844-PB | 1332 | CG11844-RB | 526..590 | 668..732 | 200 | 92.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vig-RB | 3164 | CG4170-RB | 188..1080 | 16..907 | 4440 | 99.9 | Plus |
| vig-RA | 1918 | CG4170-RA | 225..1117 | 16..907 | 4440 | 99.9 | Plus |
| vig-RC | 1838 | CG4170-RC | 145..1037 | 16..907 | 4440 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15066934..15067628 | 710..16 | 3475 | 100 | Minus |
| 2L | 23513712 | 2L | 15065256..15065457 | 907..707 | 960 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:41:27 has no hits.
BO04893.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:31 Download gff for
BO04893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-PD | 1..892 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:30:06 Download gff for
BO04893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4170-PB | 1..892 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:04 Download gff for
BO04893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-RC | 145..1037 | 16..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:51 Download gff for
BO04893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-RC | 145..1037 | 16..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:51 Download gff for
BO04893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15065256..15065456 | 708..907 | 99 | <- | Minus |
| 2L | 15066937..15067628 | 16..707 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:04 Download gff for
BO04893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15065256..15065456 | 708..907 | 99 | <- | Minus |
| arm_2L | 15066937..15067628 | 16..707 | 100 | | Minus |
BO04893.complete Sequence
1504 bp (1504 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629924
> BO04893.complete
GAAGTTATCAGTCGACATGGACAGCGCCGGTAAAAATCGTTATGAACTTT
TGTTCATGGACGACGATGTCAGCGATCCATTAGATAATCTTGTGGCGCCG
ACGGCCGCTGCTGCCGCAGCAGCAGCTGGCAAGAAGAAGCAACCGTCAGC
TGCTGCTGCAGCGGCCACCAAAACGACCGCCAACAAGGTGGCCAACAGCA
ATAACAAGGCGAACGCAGGATCCAATATTGGTGGACCCAATGCCAAGAAA
CCAAATCAGGCCGAAAAGGAGAACAAGCCCAATAATGCGTTAAACAAAAC
CGATGGCAAGAAGTTCACTCCATCGGCCGACAACAAACAGCAGCAGTTCA
ATAATAACGCCAGCAGCAATTACAAACAACAGGGTGCTCCACGGCAAGGA
GGTGGCGCCAACCGAACACGTGAATTTGGTAGCGGTCAAGGACAGGGTCA
AGGACAAGGTGGCCAGCAGCAGCGCAGCGTAAACTTCCGTCAACAGAATG
GCAATGCCGAGACTCGTGAGCAGCGCAACAATCGCCGCAATGTCCGCGAA
AACGTCGGAGCACCCGATGGCCAGCAGTCGCGACCTTACCGCGGACCAGG
TGGAGGCCCAGGTGCTGGCGGAGATCGTCCCCAGCGTCAGAACCGCAACT
ACGATGGCCAGAACAGGAAGCGCGAGTTCGACCGCCAGTCGGGTTCCGAT
AGAACTGGTGTGAAGTCAATTGACAAACGCGATGGAGCTGGCTCCCACAA
CTGGGGATCGGTCAAGGAGGCTATTGATGATGTGAACAAGAACGAAAGCG
AAACCAATGTGACCAATGCCGAGGGCGGCGCCAAGGCCGATGAATCTGGC
ACTGAACCACAAAACGAGCAGGCTACCGCCGAGGAGGAAGCCAAAGAGCT
GACCTTGGACGAGTGGAAGGCACAGCAAGGACAGCGCATCAAGCCAACCT
TTAATATCCGCAAGGCTGGAGAAGGTGAGGACACCACACAATGGAAGAAA
ATGGTCGTCCTAACTAGCAACAAGAAGAAGGAGAACGACAGCGAAGAGGA
GCTCGAGTACGACCCTGCCCTTTATCCACAGCGTGTGGGCAGGCAACAGC
GCGTCCTGGACATTCAGTTCAATTTCAACGATGGTCGTCGTGGCGGACCT
GGCGGTTTCGGTGGACGCGGTGGCCGTGGAGGCCCCAGACCCGGTGGATT
TGGAGGCGGACCACGCAGCGAGGGTGGCAACCGCGATGGCGGCAATCGTG
AGGGCGGCCGAGATAATCGTGAGGGTGGAAACCGTGGCCCACGGGATGGC
CAGCAGCATAATAACGAGGGCGGCGGTTCATCCGCTCAAAATCAAAGGCC
ACCCATCGATCGTCGCGGTCCGGGAAACAACCAGAACAACAATCAGAACA
GCGGTCCAGGGCCGAATAAGCGTTTTGAGCGACAACAGAACACCGCTCCC
AAGGTCAACGATGAGCGTCAGTTTCCCACTCTGGCTGCAAGCTTTCTAGA
CCAT
BO04893.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vig-RB | 1473 | CG4170-PB | 1..1470 | 17..1486 | 7350 | 100 | Plus |
| vig-RA | 1473 | CG4170-PA | 1..1470 | 17..1486 | 7350 | 100 | Plus |
| vig-RC | 1473 | CG4170-PC | 1..1470 | 17..1486 | 7350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vig-RB | 3164 | CG4170-RB | 188..1658 | 16..1486 | 7355 | 100 | Plus |
| vig-RA | 1918 | CG4170-RA | 225..1695 | 16..1486 | 7355 | 100 | Plus |
| vig-RC | 1838 | CG4170-RC | 145..1615 | 16..1486 | 7355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15066934..15067628 | 710..16 | 3475 | 100 | Minus |
| 2L | 23513712 | 2L | 15064437..15064950 | 1486..973 | 2570 | 100 | Minus |
| 2L | 23513712 | 2L | 15065187..15065457 | 977..707 | 1355 | 100 | Minus |
| Y | 3667352 | Y | 3023805..3023918 | 1021..1134 | 240 | 80.7 | Plus |
| 3R | 32079331 | 3R | 25124888..25125001 | 1021..1134 | 240 | 80.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:35:28 has no hits.
BO04893.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:56 Download gff for
BO04893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-RA | 1..1473 | 17..1490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:38 Download gff for
BO04893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-RA | 203..1676 | 16..1490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:25 Download gff for
BO04893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-RC | 146..1615 | 17..1488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:56 Download gff for
BO04893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-RA | 203..1676 | 16..1490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:21 Download gff for
BO04893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-RC | 146..1615 | 17..1488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:21 Download gff for
BO04893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15064435..15064948 | 975..1488 | 99 | <- | Minus |
| 2L | 15065190..15065456 | 708..974 | 100 | <- | Minus |
| 2L | 15066937..15067627 | 17..707 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:25 Download gff for
BO04893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15064435..15064948 | 975..1488 | 99 | <- | Minus |
| arm_2L | 15065190..15065456 | 708..974 | 100 | <- | Minus |
| arm_2L | 15066937..15067627 | 17..707 | 100 | | Minus |
BO04893.pep Sequence
Translation from 16 to 1504
> BO04893.pep
MDSAGKNRYELLFMDDDVSDPLDNLVAPTAAAAAAAAGKKKQPSAAAAAA
TKTTANKVANSNNKANAGSNIGGPNAKKPNQAEKENKPNNALNKTDGKKF
TPSADNKQQQFNNNASSNYKQQGAPRQGGGANRTREFGSGQGQGQGQGGQ
QQRSVNFRQQNGNAETREQRNNRRNVRENVGAPDGQQSRPYRGPGGGPGA
GGDRPQRQNRNYDGQNRKREFDRQSGSDRTGVKSIDKRDGAGSHNWGSVK
EAIDDVNKNESETNVTNAEGGAKADESGTEPQNEQATAEEEAKELTLDEW
KAQQGQRIKPTFNIRKAGEGEDTTQWKKMVVLTSNKKKENDSEEELEYDP
ALYPQRVGRQQRVLDIQFNFNDGRRGGPGGFGGRGGRGGPRPGGFGGGPR
SEGGNRDGGNREGGRDNREGGNRGPRDGQQHNNEGGGSSAQNQRPPIDRR
GPGNNQNNNQNSGPGPNKRFERQQNTAPKVNDERQFPTLAASFLDH
BO04893.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vig-PB | 490 | CG4170-PB | 1..490 | 1..490 | 2614 | 100 | Plus |
| vig-PA | 490 | CG4170-PA | 1..490 | 1..490 | 2614 | 100 | Plus |
| vig-PC | 490 | CG4170-PC | 1..490 | 1..490 | 2614 | 100 | Plus |
| vig-PD | 490 | CG4170-PD | 1..490 | 1..490 | 2614 | 100 | Plus |
| vig2-PD | 412 | CG11844-PD | 1..411 | 1..489 | 716 | 41.7 | Plus |
