Clone Sequence Records
BO04894.3prime Sequence
911 bp (799 high quality bases) assembled on 2005-12-02
> BO04894.3prime
ATGGTCTAGAAAGCTTGCAACCGGCGAATCATATTTACAGGTCATGGTTG
CCTCGATGTCCTCCACCGTTCGCGGCACAATCGCAAAGTTCTCCACGCCA
GTCTTCGTGATGAGCACATCGTCCTCGATGCGCACACCTCCGAAATTCCG
GAAGCGATTGAACATCTCTGCGTTAATGAATTTAGCAATGTTCGGATCGG
CCAGAGCGCGGTCCATCAGCCAGTTGATGAAGTAGCAGCCGGGTTCGATT
GTGACATACATGCCGGCCTTAAGGATGCGGGCAAAGCGCAGCTTGCTCAG
CCACGGTTCACTGGGGCGCTTGGGCTCCTTGGGCAGATAGCCGCCCACGT
CGTGCACATCCAGACCGATCAAGTGGCCCAGGCCATGTGGCTGGAACACG
CCCGAAACACCTGCCTCGAGCATCTCCTCCACATCGCCCTTGAGCATGCC
GCCCTCCTTCAGGCGCTGCAGCAACACCCTGCCCGCCAGCTTGTGCATGT
CCACCCAGGAGACTCCGTCACGGGCTGACTCTGTGACCGCATTGCGGGCA
TCCAGCACGGCATTGTAGATGAACTTCTGGTCGTCGGTGAACTTTCCATT
GGCCGGGAATGTGCAGGTTATGTCGGCCGCATAGCCACAATAGTTGGCTC
CCATATCGAACAGGCAGAGATCACCATCCTGGACGGGCTTGCTGTTGGGT
GCGCCCGCGTGTCCATAGTGCAAGATCGACGAGTTCGTTCCGCTGCCGCA
TATGCAGGTGTAGGAGGCATGCCGGCAGCCGCCCACGGAGTAGGCGTGGT
GCAGGAACAGGGATTCGCCCTCAAATTCCATTCTACCGGGACGCATAAAC
CGCATCACCTTGATGTGCGCGTCCGAGGATACCTTTGGCACGTAGCGCAG
CACCTCGATCT
BO04894.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5663-PA | 1476 | Dip-C-RA | 581..1473 | 911..19 | 4415 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dip-C-RB | 1951 | CG5663-RB | 957..1849 | 911..19 | 4435 | 99.8 | Minus |
| Dip-C-RA | 1747 | CG5663-RA | 753..1645 | 911..19 | 4435 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12411911..12412803 | 19..911 | 4435 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:29:49 has no hits.
BO04894.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:32 Download gff for
BO04894.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-C-PA | 581..1476 | 18..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:30:07 Download gff for
BO04894.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5663-PA | 581..1476 | 18..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:35 Download gff for
BO04894.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-C-RA | 737..1643 | 4..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:21 Download gff for
BO04894.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-C-RA | 753..1659 | 4..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:21 Download gff for
BO04894.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12411897..12412803 | 4..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:35 Download gff for
BO04894.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8237619..8238525 | 4..911 | 99 | | Plus |
BO04894.5prime Sequence
882 bp (830 high quality bases) assembled on 2005-12-02
> BO04894.5prime
GAAGTTATCAGTCGACATGGCCGCCTTTCAGATGGGATCGGGTTACGCAG
TGCCCATGACCCTCTTCCGGAACAACAGGGATCGTGCTGGCAAGGCCATC
CTTAAGGAGCTGCTGCCGGGCCTCAAGTTCAACGACGGCAACCTGCTGGT
GCTCCTCGAGGGCGGCAAGGACCAGAGCCTGTACAACACCGACGTGGACT
ACGTTTTCCGGCAGGAGTCCTATTTCCAGTACTTGTTCGGTGTCAAGGAG
CCGGGCTGCTACGGCATCCTAACCATTGATGTGAAAACTGGTGCACAGAA
AAGTGTTCTCTTTGTTCCTCGCTTTCCCGATGAGTACGGCACCTGGATGG
GCGAACTGCTTGGGCTGCAGGAGTTCAAGGCCATGTACGAGGTGGACGAG
GTGTTTTATGTTGACGAAATGAGTGTTTATCTGGAGGGGGCGTCGCCCAA
GCTGATACTCACATTGAGTGGCACCAACAGCGATAGCGGGCTCACCCTTC
AGCCGCCCGACTTTGCTGGCAAGGAGAAGTATGTGACTGACTGCAATCTG
CTGTATCCAATTCTCTCTGAGTGCCGAGTGATCAAGTCACCCGAAGAGAT
CGAGGTGCTGCGCTACGTGGCCAAGGTATCCTCGGACGCGCACATCAAGG
TGATGCGGTTTATGCGTCCCGGTAGAATGGAATTTGAGGGCGAATCCCTG
TTCCTGCACCACGCCTACTCCGTGGGCGGCTGCCGGCATGCCTCCTACAC
CTGCATATGCGGCAGCGGAACGAACTCGTCGATCTTGCACTATGGACACG
CGGGCGCACCCAACAGCAAGCCCGTCCAGGATGGTGATCTCTGCCCTGTC
GATATGGGAGCCAACTATTGTGGCTATGCGGC
BO04894.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5663-PA | 1476 | Dip-C-RA | 1..829 | 17..845 | 4145 | 100 | Plus |
| CG5663-PA | 1476 | Dip-C-RA | 833..866 | 849..882 | 170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dip-C-RB | 1951 | CG5663-RB | 376..1242 | 16..882 | 4290 | 99.8 | Plus |
| Dip-C-RA | 1747 | CG5663-RA | 172..1038 | 16..882 | 4290 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12412518..12413384 | 882..16 | 4290 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:33:01 has no hits.
BO04894.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:33 Download gff for
BO04894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-C-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:30:08 Download gff for
BO04894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5663-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:41 Download gff for
BO04894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-C-RA | 150..1022 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:20:10 Download gff for
BO04894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-C-RA | 166..1038 | 9..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:20:10 Download gff for
BO04894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12412518..12413387 | 9..882 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:41 Download gff for
BO04894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8238240..8239109 | 9..882 | 99 | | Minus |
BO04894.complete Sequence
1507 bp (1507 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629925
> BO04894.complete
GAAGTTATCAGTCGACATGGCCGCCTTTCAGATGGGATCGGGTTACGCAG
TGCCCATGACCCTCTTCCGGAACAACAGGGATCGTGCTGGCAAGGCCATC
CTTAAGGAGCTGCTGCCGGGCCTCAAGTTCAACGACGGCAACCTGCTGGT
GCTCCTCGAGGGCGGCAAGGACCAGAGCCTGTACAACACCGACGTGGACT
ACGTTTTCCGGCAGGAGTCCTATTTCCAGTACTTGTTCGGTGTCAAGGAG
CCGGGCTGCTACGGCATCCTAACCATTGATGTGAAAACTGGTGCACAGAA
AAGTGTTCTCTTTGTTCCTCGCTTTCCCGATGAGTACGGCACCTGGATGG
GCGAACTGCTTGGGCTGCAGGAGTTCAAGGCCATGTACGAGGTGGACGAG
GTGTTTTATGTTGACGAAATGAGTGTTTATCTGGAGGGGGCGTCGCCCAA
GCTGATACTCACATTGAGTGGCACCAACAGCGATAGCGGGCTCACCCTTC
AGCCGCCCGACTTTGCTGGCAAGGAGAAGTATGTGACTGACTGCAATCTG
CTGTATCCAATTCTCTCTGAGTGCCGAGTGATCAAGTCACCCGAAGAGAT
CGAGGTGCTGCGCTACGTGGCCAAGGTATCCTCGGACGCGCACATCAAGG
TGATGCGGTTTATGCGTCCCGGTAGAATGGAATTTGAGGGCGAATCCCTG
TTCCTGCACCACGCCTACTCCGTGGGCGGCTGCCGGCATGCCTCCTACAC
CTGCATATGCGGCAGCGGAACGAACTCGTCGATCTTGCACTATGGACACG
CGGGCGCACCCAACAGCAAGCCCGTCCAGGATGGTGATCTCTGCCTGTTC
GATATGGGAGCCAACTATTGTGGCTATGCGGCCGACATAACCTGCACATT
CCCGGCCAATGGAAAGTTCACCGACGACCAGAAGTTCATCTACAATGCCG
TGCTGGATGCCCGCAATGCGGTCACAGAGTCAGCCCGTGACGGAGTCTCC
TGGGTGGACATGCACAAGCTGGCGGGCAGGGTGTTGCTGCAGCGCCTGAA
GGAGGGCGGCATGCTCAAGGGCGATGTGGAGGAGATGCTCGAGGCAGGTG
TTTCGGGCGTGTTCCAGCCACATGGCCTGGGCCACTTGATCGGTCTGGAT
GTGCACGACGTGGGCGGCTATCTGCCCAAGGAGCCCAAGCGCCCCAGTGA
ACCGTGGCTGAGCAAGCTGCGCTTTGCCCGCATCCTTAAGGCCGGCATGT
ATGTCACAATCGAACCCGGCTGCTACTTCATCAACTGGCTGATGGACCGC
GCTCTGGCCGATCCGAACATTGCTAAATTCATTAACGCAGAGATGTTCAA
TCGCTTCCGGAATTTCGGAGGTGTGCGCATCGAGGACGATGTGCTCATCA
CGAAGACTGGCGTGGAGAACTTTGCGATTGTGCCGCGAACGGTGGAGGAC
ATCGAGGCAACCATGACCTGTAAATATGATTCGCCGGTTGCAAGCTTTCT
AGACCAT
BO04894.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dip-C-RB | 1476 | CG5663-PB | 1..1473 | 17..1489 | 7365 | 100 | Plus |
| Dip-C-RA | 1476 | CG5663-PA | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dip-C-RB | 1951 | CG5663-RB | 376..1849 | 16..1489 | 7370 | 100 | Plus |
| Dip-C-RA | 1747 | CG5663-RA | 172..1645 | 16..1489 | 7370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12411911..12413384 | 1489..16 | 7370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:49:48 has no hits.
BO04894.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:57 Download gff for
BO04894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-C-RA | 1..1476 | 17..1490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:40 Download gff for
BO04894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-C-RA | 349..1842 | 9..1504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:41 Download gff for
BO04894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-C-RA | 157..1629 | 17..1491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:57 Download gff for
BO04894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-C-RA | 349..1842 | 9..1504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:54 Download gff for
BO04894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-C-RA | 173..1645 | 17..1491 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:54 Download gff for
BO04894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12411909..12413383 | 17..1491 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:41 Download gff for
BO04894.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8237631..8239105 | 17..1491 | 99 | | Minus |
BO04894.pep Sequence
Translation from 16 to 1507
> BO04894.pep
MAAFQMGSGYAVPMTLFRNNRDRAGKAILKELLPGLKFNDGNLLVLLEGG
KDQSLYNTDVDYVFRQESYFQYLFGVKEPGCYGILTIDVKTGAQKSVLFV
PRFPDEYGTWMGELLGLQEFKAMYEVDEVFYVDEMSVYLEGASPKLILTL
SGTNSDSGLTLQPPDFAGKEKYVTDCNLLYPILSECRVIKSPEEIEVLRY
VAKVSSDAHIKVMRFMRPGRMEFEGESLFLHHAYSVGGCRHASYTCICGS
GTNSSILHYGHAGAPNSKPVQDGDLCLFDMGANYCGYAADITCTFPANGK
FTDDQKFIYNAVLDARNAVTESARDGVSWVDMHKLAGRVLLQRLKEGGML
KGDVEEMLEAGVSGVFQPHGLGHLIGLDVHDVGGYLPKEPKRPSEPWLSK
LRFARILKAGMYVTIEPGCYFINWLMDRALADPNIAKFINAEMFNRFRNF
GGVRIEDDVLITKTGVENFAIVPRTVEDIEATMTCKYDSPVASFLDH
BO04894.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dip-C-PB | 491 | CG5663-PB | 1..491 | 1..491 | 2602 | 100 | Plus |
| Dip-C-PA | 491 | CG5663-PA | 1..491 | 1..491 | 2602 | 100 | Plus |
| CG9581-PA | 545 | CG9581-PA | 124..510 | 45..465 | 304 | 27.4 | Plus |
