Clone Sequence Records
BO04896.3prime Sequence
884 bp (844 high quality bases) assembled on 2005-12-02
> BO04896.3prime
ATGGTCTAGAAAGCTTGCATTTCTTCGCAATCCAAAGGTGGGCAACTGAT
GGGCACAACAGCAGGCCACCACGTACAAGATGCCAAAAAAGAAGTTCAGC
TTGGCTGTTTGCCGAGGCACCAGATGCATCGTCTGTTCGTTGCGGAAACG
TTTCTCAATCTGGAACGCTTGCGGCAGGGTTACCAGCGGCAGCAGGAACC
ACAGAGAGTACTTCAAACCGAAGATGAAGAACAATGAGTAGGGTGCAAAG
AGCAGCATGGCATACAGAACGTGCGATGCTGTACGGCCTATCAAAATGGC
GAGCGTTACGATTCCAGCCCGGCGATCGTTGTCCGCATCCCTTGTGTTGT
TGCTGTGCAGGATGGCCTCCGTGTTGAGAGCCAAAGGAATCGCATAGCCC
ATTGTCGTCCAGTCCAAATGACCTGTTTGCGACATGAAGGCGAATAGCAC
CGAGATGGGTCCAAAGAGTATCAGTATAACCAGATCTCCCAGGGCGATGT
ACTTGAAACCAATGCCTCCGGTGTACAGGAAGCTCGAGGACAATCCCCCG
AAGTAGATCAGTGCCAGGTGCTCCATTTTCGCCGGACTGAGCACAGCCAG
CAAAACAAATCCTCCACAGCCAGCCATGTACAGAATGGCACCCAGCGATA
CCACCTCATCCTTGGTGAGTATGTGATCCACCAGCGTGCGGTCGTCGGCT
TTCTGCTTGTCAATGCCCTTGATGAAGTCGAAATAGGTGTTAACTACGTT
GCCGGCGCAGTGGACGGTGACCACGGTGAAGGCGGTGAGAAAGAAGGTGG
CCAGCGAAAACTCCTCCGCCCACTGGGAGCGGTAGGCCAGGGCTGAGCCG
AGCAGCGTTGGAACCAGACTGGCGGACAGCGACC
BO04896.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5876-PA | 1080 | heix-RA | 212..1077 | 884..19 | 4330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
heix-RA | 3130 | CG5876-RA | 758..1623 | 884..19 | 4330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16297558..16298195 | 19..656 | 3190 | 100 | Plus |
2L | 23513712 | 2L | 16298869..16299101 | 652..884 | 1165 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 10:10:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader2 | 5124 | invader2 INVADER2 5124bp | 717..767 | 742..792 | 111 | 68.6 | Plus |
BO04896.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:34 Download gff for
BO04896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-PA | 212..1080 | 16..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:30:10 Download gff for
BO04896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5876-PA | 212..1080 | 16..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:54:00 Download gff for
BO04896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 758..1623 | 19..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:49:46 Download gff for
BO04896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 758..1623 | 19..884 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:49:46 Download gff for
BO04896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16297558..16298193 | 19..654 | 100 | <- | Plus |
2L | 16298872..16299101 | 655..884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:54:00 Download gff for
BO04896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16297558..16298193 | 19..654 | 100 | <- | Plus |
arm_2L | 16298872..16299101 | 655..884 | 100 | | Plus |
BO04896.5prime Sequence
883 bp (828 high quality bases) assembled on 2005-11-29
> BO04896.5prime
GAAGTTATCAGTCGACATGGCCACAAGCAGCCAGCTGTTGCCCAATGGCA
ACTTGTCCAGGAATGGCAAGACCAAGACAGAGGACGGTGAGGAGGTGGAA
GCCGTTGTTGGAGCTCGTGCAGCAGGTGCAGATGCCGGAGTAGCACTAAC
GGGACGACTAACAGGACACCCATCCACATCCGGAACGTTTATGAAACTGA
AAACCTATCTCCTAGCTCTGCGTCCCTGGTCGCTGTCCGCCAGTCTGGTT
CCAACGCTGCTCGGCTCAGCCCTGGCCTACCGCTCCCAGTGGGCGGAGGA
GTTTTCGCTGGCCACCTTCTTTCTCACCGCCTTCACCGTGGTCACCGTCC
ACTGCGCCGGCAACGTAGTTAACACCTATTTCGACTTCATCAAGGGCATT
GACAAGCAGAAAGCCGACGACCGCACGCTGGTGGATCACATACTCACCAA
GGATGAGGTGGTATCGCTGGGTGCCATTCTGTACATGGCTGGCTGTGGAG
GATTTGTTTTGCTGGCTGTGCTCAGTCCGGCGAAAATGGAGCACCTGGCA
CTGATCTACTTCGGGGGATTGTCCTCGAGCTTCCTGTACACCGGAGGCAT
TGGTTTCAAGTACATCGCCCTGNGAGATCTGGTTATACTGATACTCTTTG
GACCCATCTCGGTGCTATTCGCCTTCATGTCGCANACAGGTCATTTGGAC
TGGACGACAATGGGCTATGCGATTCCTTTGGCTCTCAACACGGAGGCCAT
CCTGCACAGCAACAACACAAGGGATGCGGACAACGATCGCCGGGCTGGAA
TCGTAACGCTCGCCATTTTGATAGGCCGTACAGCATCGCACGTTCTGTAT
GCCATGCTGCTCTTTGCACCCTACTCATTGTTC
BO04896.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5876-PA | 1080 | heix-RA | 1..867 | 17..883 | 4297 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
heix-RA | 3130 | CG5876-RA | 546..1413 | 16..883 | 4318 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16298869..16299313 | 460..16 | 2225 | 100 | Minus |
2L | 23513712 | 2L | 16297768..16298195 | 883..456 | 2118 | 99.5 | Minus |
Blast to na_te.dros performed 2015-02-12 14:11:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader2 | 5124 | invader2 INVADER2 5124bp | 717..767 | 370..320 | 111 | 68.6 | Minus |
BO04896.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:35 Download gff for
BO04896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:30:11 Download gff for
BO04896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5876-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:06:16 Download gff for
BO04896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 546..1413 | 16..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:27 Download gff for
BO04896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 546..1413 | 16..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:27 Download gff for
BO04896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16297768..16298193 | 458..883 | 99 | <- | Minus |
2L | 16298872..16299313 | 16..457 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:06:16 Download gff for
BO04896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16297768..16298193 | 458..883 | 99 | <- | Minus |
arm_2L | 16298872..16299313 | 16..457 | 100 | | Minus |
BO04896.complete Sequence
1111 bp (1111 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629926
> BO04896.complete
GAAGTTATCAGTCGACATGGCCACAAGCAGCCAGCTGTTGCCCAATGGCA
ACTTGTCCAGGAATGGCAAGACCAAGACAGAGGACGGTGAGGAGGTGGAA
GCCGTTGTTGGAGCTCGTGCAGCAGGTGCAGATGCCGGAGTAGCACTAAC
GGGACGACTAACAGGACACCCATCCACATCCGGAACGTTTATGAAACTGA
AAACCTATCTCCTAGCTCTGCGTCCCTGGTCGCTGTCCGCCAGTCTGGTT
CCAACGCTGCTCGGCTCAGCCCTGGCCTACCGCTCCCAGTGGGCGGAGGA
GTTTTCGCTGGCCACCTTCTTTCTCACCGCCTTCACCGTGGTCACCGTCC
ACTGCGCCGGCAACGTAGTTAACACCTATTTCGACTTCATCAAGGGCATT
GACAAGCAGAAAGCCGACGACCGCACGCTGGTGGATCACATACTCACCAA
GGATGAGGTGGTATCGCTGGGTGCCATTCTGTACATGGCTGGCTGTGGAG
GATTTGTTTTGCTGGCTGTGCTCAGTCCGGCGAAAATGGAGCACCTGGCA
CTGATCTACTTCGGGGGATTGTCCTCGAGCTTCCTGTACACCGGAGGCAT
TGGTTTCAAGTACATCGCCCTGGGAGATCTGGTTATACTGATACTCTTTG
GACCCATCTCGGTGCTATTCGCCTTCATGTCGCAAACAGGTCATTTGGAC
TGGACGACAATGGGCTATGCGATTCCTTTGGCTCTCAACACGGAGGCCAT
CCTGCACAGCAACAACACAAGGGATGCGGACAACGATCGCCGGGCTGGAA
TCGTAACGCTCGCCATTTTGATAGGCCGTACAGCATCGCACGTTCTGTAT
GCCATGCTGCTCTTTGCACCCTACTCATTGTTCTTCATCTTCGGTTTGAA
GTACTCTCTGTGGTTCCTGCTGCCGCTGGTAACCCTGCCGCAAGCGTTCC
AGATTGAGAAACGTTTCCGCAACGAACAGACGATGCATCTGGTGCCTCGG
CAAACAGCCAAGCTGAACTTCTTTTTTGGCATCTTGTACGTGGTGGCCTG
CTGTTGTGCCCATCAGTTGCCCACCTTTGGATTGCGAAGAAATGCAAGCT
TTCTAGACCAT
BO04896.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
heix-RA | 1080 | CG5876-PA | 1..1077 | 17..1093 | 5385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
heix-RA | 3130 | CG5876-RA | 546..1623 | 16..1093 | 5390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16297558..16298195 | 1093..456 | 3190 | 100 | Minus |
2L | 23513712 | 2L | 16298869..16299313 | 460..16 | 2225 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader2 | 5124 | invader2 INVADER2 5124bp | 717..767 | 370..320 | 111 | 68.6 | Minus |
BO04896.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:36 Download gff for
BO04896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 1..1080 | 17..1096 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:11 Download gff for
BO04896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 563..1640 | 16..1093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:42 Download gff for
BO04896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 547..1623 | 17..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:36 Download gff for
BO04896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 563..1640 | 16..1093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:59 Download gff for
BO04896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 547..1623 | 17..1095 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:59 Download gff for
BO04896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16297555..16298193 | 458..1095 | 99 | <- | Minus |
2L | 16298872..16299312 | 17..457 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:42 Download gff for
BO04896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16297555..16298193 | 458..1095 | 99 | <- | Minus |
arm_2L | 16298872..16299312 | 17..457 | 100 | | Minus |
BO04896.pep Sequence
Translation from 16 to 1111
> BO04896.pep
MATSSQLLPNGNLSRNGKTKTEDGEEVEAVVGARAAGADAGVALTGRLTG
HPSTSGTFMKLKTYLLALRPWSLSASLVPTLLGSALAYRSQWAEEFSLAT
FFLTAFTVVTVHCAGNVVNTYFDFIKGIDKQKADDRTLVDHILTKDEVVS
LGAILYMAGCGGFVLLAVLSPAKMEHLALIYFGGLSSSFLYTGGIGFKYI
ALGDLVILILFGPISVLFAFMSQTGHLDWTTMGYAIPLALNTEAILHSNN
TRDADNDRRAGIVTLAILIGRTASHVLYAMLLFAPYSLFFIFGLKYSLWF
LLPLVTLPQAFQIEKRFRNEQTMHLVPRQTAKLNFFFGILYVVACCCAHQ
LPTFGLRRNASFLDH
BO04896.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
heix-PA | 359 | CG5876-PA | 1..359 | 1..359 | 1841 | 100 | Plus |