Clone BO04896 Report

Search the DGRC for BO04896

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:96
Vector:pDNR-Dual
Associated Gene/Transcriptheix-RA
Protein status:BO04896.pep: validated full length
Sequenced Size:1111

Clone Sequence Records

BO04896.3prime Sequence

884 bp (844 high quality bases) assembled on 2005-12-02

> BO04896.3prime
ATGGTCTAGAAAGCTTGCATTTCTTCGCAATCCAAAGGTGGGCAACTGAT
GGGCACAACAGCAGGCCACCACGTACAAGATGCCAAAAAAGAAGTTCAGC
TTGGCTGTTTGCCGAGGCACCAGATGCATCGTCTGTTCGTTGCGGAAACG
TTTCTCAATCTGGAACGCTTGCGGCAGGGTTACCAGCGGCAGCAGGAACC
ACAGAGAGTACTTCAAACCGAAGATGAAGAACAATGAGTAGGGTGCAAAG
AGCAGCATGGCATACAGAACGTGCGATGCTGTACGGCCTATCAAAATGGC
GAGCGTTACGATTCCAGCCCGGCGATCGTTGTCCGCATCCCTTGTGTTGT
TGCTGTGCAGGATGGCCTCCGTGTTGAGAGCCAAAGGAATCGCATAGCCC
ATTGTCGTCCAGTCCAAATGACCTGTTTGCGACATGAAGGCGAATAGCAC
CGAGATGGGTCCAAAGAGTATCAGTATAACCAGATCTCCCAGGGCGATGT
ACTTGAAACCAATGCCTCCGGTGTACAGGAAGCTCGAGGACAATCCCCCG
AAGTAGATCAGTGCCAGGTGCTCCATTTTCGCCGGACTGAGCACAGCCAG
CAAAACAAATCCTCCACAGCCAGCCATGTACAGAATGGCACCCAGCGATA
CCACCTCATCCTTGGTGAGTATGTGATCCACCAGCGTGCGGTCGTCGGCT
TTCTGCTTGTCAATGCCCTTGATGAAGTCGAAATAGGTGTTAACTACGTT
GCCGGCGCAGTGGACGGTGACCACGGTGAAGGCGGTGAGAAAGAAGGTGG
CCAGCGAAAACTCCTCCGCCCACTGGGAGCGGTAGGCCAGGGCTGAGCCG
AGCAGCGTTGGAACCAGACTGGCGGACAGCGACC

BO04896.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5876-PA 1080 heix-RA 212..1077 884..19 4330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
heix-RA 3130 CG5876-RA 758..1623 884..19 4330 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16297558..16298195 19..656 3190 100 Plus
2L 23513712 2L 16298869..16299101 652..884 1165 100 Plus
Blast to na_te.dros performed 2015-02-12 10:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
invader2 5124 invader2 INVADER2 5124bp 717..767 742..792 111 68.6 Plus

BO04896.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:34 Download gff for BO04896.3prime
Subject Subject Range Query Range Percent Splice Strand
heix-PA 212..1080 16..884 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:30:10 Download gff for BO04896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5876-PA 212..1080 16..884 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:54:00 Download gff for BO04896.3prime
Subject Subject Range Query Range Percent Splice Strand
heix-RA 758..1623 19..884 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:49:46 Download gff for BO04896.3prime
Subject Subject Range Query Range Percent Splice Strand
heix-RA 758..1623 19..884 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:49:46 Download gff for BO04896.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16297558..16298193 19..654 100 <- Plus
2L 16298872..16299101 655..884 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:54:00 Download gff for BO04896.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16297558..16298193 19..654 100 <- Plus
arm_2L 16298872..16299101 655..884 100   Plus

BO04896.5prime Sequence

883 bp (828 high quality bases) assembled on 2005-11-29

> BO04896.5prime
GAAGTTATCAGTCGACATGGCCACAAGCAGCCAGCTGTTGCCCAATGGCA
ACTTGTCCAGGAATGGCAAGACCAAGACAGAGGACGGTGAGGAGGTGGAA
GCCGTTGTTGGAGCTCGTGCAGCAGGTGCAGATGCCGGAGTAGCACTAAC
GGGACGACTAACAGGACACCCATCCACATCCGGAACGTTTATGAAACTGA
AAACCTATCTCCTAGCTCTGCGTCCCTGGTCGCTGTCCGCCAGTCTGGTT
CCAACGCTGCTCGGCTCAGCCCTGGCCTACCGCTCCCAGTGGGCGGAGGA
GTTTTCGCTGGCCACCTTCTTTCTCACCGCCTTCACCGTGGTCACCGTCC
ACTGCGCCGGCAACGTAGTTAACACCTATTTCGACTTCATCAAGGGCATT
GACAAGCAGAAAGCCGACGACCGCACGCTGGTGGATCACATACTCACCAA
GGATGAGGTGGTATCGCTGGGTGCCATTCTGTACATGGCTGGCTGTGGAG
GATTTGTTTTGCTGGCTGTGCTCAGTCCGGCGAAAATGGAGCACCTGGCA
CTGATCTACTTCGGGGGATTGTCCTCGAGCTTCCTGTACACCGGAGGCAT
TGGTTTCAAGTACATCGCCCTGNGAGATCTGGTTATACTGATACTCTTTG
GACCCATCTCGGTGCTATTCGCCTTCATGTCGCANACAGGTCATTTGGAC
TGGACGACAATGGGCTATGCGATTCCTTTGGCTCTCAACACGGAGGCCAT
CCTGCACAGCAACAACACAAGGGATGCGGACAACGATCGCCGGGCTGGAA
TCGTAACGCTCGCCATTTTGATAGGCCGTACAGCATCGCACGTTCTGTAT
GCCATGCTGCTCTTTGCACCCTACTCATTGTTC

BO04896.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5876-PA 1080 heix-RA 1..867 17..883 4297 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
heix-RA 3130 CG5876-RA 546..1413 16..883 4318 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16298869..16299313 460..16 2225 100 Minus
2L 23513712 2L 16297768..16298195 883..456 2118 99.5 Minus
Blast to na_te.dros performed 2015-02-12 14:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
invader2 5124 invader2 INVADER2 5124bp 717..767 370..320 111 68.6 Minus

BO04896.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:35 Download gff for BO04896.5prime
Subject Subject Range Query Range Percent Splice Strand
heix-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:30:11 Download gff for BO04896.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5876-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:06:16 Download gff for BO04896.5prime
Subject Subject Range Query Range Percent Splice Strand
heix-RA 546..1413 16..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:27 Download gff for BO04896.5prime
Subject Subject Range Query Range Percent Splice Strand
heix-RA 546..1413 16..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:27 Download gff for BO04896.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16297768..16298193 458..883 99 <- Minus
2L 16298872..16299313 16..457 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:06:16 Download gff for BO04896.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16297768..16298193 458..883 99 <- Minus
arm_2L 16298872..16299313 16..457 100   Minus

BO04896.complete Sequence

1111 bp (1111 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629926

> BO04896.complete
GAAGTTATCAGTCGACATGGCCACAAGCAGCCAGCTGTTGCCCAATGGCA
ACTTGTCCAGGAATGGCAAGACCAAGACAGAGGACGGTGAGGAGGTGGAA
GCCGTTGTTGGAGCTCGTGCAGCAGGTGCAGATGCCGGAGTAGCACTAAC
GGGACGACTAACAGGACACCCATCCACATCCGGAACGTTTATGAAACTGA
AAACCTATCTCCTAGCTCTGCGTCCCTGGTCGCTGTCCGCCAGTCTGGTT
CCAACGCTGCTCGGCTCAGCCCTGGCCTACCGCTCCCAGTGGGCGGAGGA
GTTTTCGCTGGCCACCTTCTTTCTCACCGCCTTCACCGTGGTCACCGTCC
ACTGCGCCGGCAACGTAGTTAACACCTATTTCGACTTCATCAAGGGCATT
GACAAGCAGAAAGCCGACGACCGCACGCTGGTGGATCACATACTCACCAA
GGATGAGGTGGTATCGCTGGGTGCCATTCTGTACATGGCTGGCTGTGGAG
GATTTGTTTTGCTGGCTGTGCTCAGTCCGGCGAAAATGGAGCACCTGGCA
CTGATCTACTTCGGGGGATTGTCCTCGAGCTTCCTGTACACCGGAGGCAT
TGGTTTCAAGTACATCGCCCTGGGAGATCTGGTTATACTGATACTCTTTG
GACCCATCTCGGTGCTATTCGCCTTCATGTCGCAAACAGGTCATTTGGAC
TGGACGACAATGGGCTATGCGATTCCTTTGGCTCTCAACACGGAGGCCAT
CCTGCACAGCAACAACACAAGGGATGCGGACAACGATCGCCGGGCTGGAA
TCGTAACGCTCGCCATTTTGATAGGCCGTACAGCATCGCACGTTCTGTAT
GCCATGCTGCTCTTTGCACCCTACTCATTGTTCTTCATCTTCGGTTTGAA
GTACTCTCTGTGGTTCCTGCTGCCGCTGGTAACCCTGCCGCAAGCGTTCC
AGATTGAGAAACGTTTCCGCAACGAACAGACGATGCATCTGGTGCCTCGG
CAAACAGCCAAGCTGAACTTCTTTTTTGGCATCTTGTACGTGGTGGCCTG
CTGTTGTGCCCATCAGTTGCCCACCTTTGGATTGCGAAGAAATGCAAGCT
TTCTAGACCAT

BO04896.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
heix-RA 1080 CG5876-PA 1..1077 17..1093 5385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
heix-RA 3130 CG5876-RA 546..1623 16..1093 5390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16297558..16298195 1093..456 3190 100 Minus
2L 23513712 2L 16298869..16299313 460..16 2225 100 Minus
Blast to na_te.dros performed 2014-11-27 20:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
invader2 5124 invader2 INVADER2 5124bp 717..767 370..320 111 68.6 Minus

BO04896.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:36 Download gff for BO04896.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 1..1080 17..1096 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:11 Download gff for BO04896.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 563..1640 16..1093 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:42 Download gff for BO04896.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 547..1623 17..1095 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:36 Download gff for BO04896.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 563..1640 16..1093 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:59 Download gff for BO04896.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 547..1623 17..1095 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:59 Download gff for BO04896.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16297555..16298193 458..1095 99 <- Minus
2L 16298872..16299312 17..457 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:42 Download gff for BO04896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16297555..16298193 458..1095 99 <- Minus
arm_2L 16298872..16299312 17..457 100   Minus

BO04896.pep Sequence

Translation from 16 to 1111

> BO04896.pep
MATSSQLLPNGNLSRNGKTKTEDGEEVEAVVGARAAGADAGVALTGRLTG
HPSTSGTFMKLKTYLLALRPWSLSASLVPTLLGSALAYRSQWAEEFSLAT
FFLTAFTVVTVHCAGNVVNTYFDFIKGIDKQKADDRTLVDHILTKDEVVS
LGAILYMAGCGGFVLLAVLSPAKMEHLALIYFGGLSSSFLYTGGIGFKYI
ALGDLVILILFGPISVLFAFMSQTGHLDWTTMGYAIPLALNTEAILHSNN
TRDADNDRRAGIVTLAILIGRTASHVLYAMLLFAPYSLFFIFGLKYSLWF
LLPLVTLPQAFQIEKRFRNEQTMHLVPRQTAKLNFFFGILYVVACCCAHQ
LPTFGLRRNASFLDH

BO04896.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
heix-PA 359 CG5876-PA 1..359 1..359 1841 100 Plus