Clone Sequence Records
BO04907.3prime Sequence
824 bp (729 high quality bases) assembled on 2005-12-02
> BO04907.3prime
ATGGTCTAGAAAGCTTGCGTGGCGCAGCAGCATGTTGCTGACCTTGGCCT
CTGCCTTTGGCGACATTTTGTCACGGAATTGGCGATTTTCCGGGTTGGCC
AGCACCGAGGCAATGAACTCCGAGGTCTCCAGCTGCAGTTGGGCCAATCG
CTTTTGCAGCAGCTTGTTGCGCTGCACCAGCTTGATAGTCTTGATGGCAA
TGGACAACAGGCCTTCGCTATTCTGGTGGTACATGTGCTGCTCCTTTATG
GGATCCTGGCTGTACTCGTACCCACTGTCGCCATCGTGGTCGTCCTCTAT
CTGGAGCGGCACCTCTCGATCACAGTTTTTGGCCCTGGCCGATCGGTTCT
GCTTGCTACTATATCCGCTAGCCGTCGTCGGCTGTAATACTGTCTTGATG
TTGTCGCTGCTGGAATGTGGCTGTTGCTGCAGTCCCTGGATCCTGGCATC
CGAGTAGCGGTCGTCGTCCAGCTGCATCCTCTGCTCGGAGTCCATCTCCA
CCTCCGTTTCCACGCCGCTGCTCGTGTCCGTGGAGAAGGAGGACACGCGG
GCAAGGATGTGAGGCATCCTGCGCTGTAATCGCGCCGGTCGACGGCGGCT
CATCGAGTTCATCGAACCTTTGGCCACATGGTTGAGCACCGAACTAGCTT
GTGTGGCGGCAGCTGCAGATGTGGATCCCACGGACAAGGACGAGGACGAT
GATGCGGTGGATGCGGTTGCGGATGCTGATGAAATGGCGGCTGTGGCCAC
GCCATGATGTCGCCGCGTTTCGCGCAGCTGCTTTTTCTCCGAGCATATGG
TGGGCGCCATGTCGACTGATAACT
BO04907.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31324-PA | 795 | CG31324-RA | 1..792 | 810..19 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31324-RB | 3856 | CG31324-RB | 2002..2793 | 810..19 | 3960 | 100 | Minus |
CG31324-RA | 1885 | CG31324-RA | 515..1306 | 810..19 | 3960 | 100 | Minus |
CG31324-RC | 1256 | CG31324-RC | 70..677 | 626..19 | 3040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26129003..26129611 | 627..19 | 3045 | 100 | Minus |
3R | 32079331 | 3R | 26124474..26124657 | 810..627 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:30:25 has no hits.
BO04907.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:47 Download gff for
BO04907.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-PA | 1..795 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:30:26 Download gff for
BO04907.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-PA | 1..795 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:42 Download gff for
BO04907.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 510..1312 | 11..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:57 Download gff for
BO04907.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 510..1312 | 11..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:57 Download gff for
BO04907.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26124469..26124657 | 627..817 | 97 | -> | Minus |
3R | 26129004..26129610 | 20..626 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:42 Download gff for
BO04907.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21950191..21950379 | 627..817 | 97 | -> | Minus |
arm_3R | 21954726..21955332 | 20..626 | 100 | <- | Minus |
BO04907.5prime Sequence
824 bp (755 high quality bases) assembled on 2005-11-29
> BO04907.5prime
GAAGTTATCAGTCGACATGGCGCCCACCATATGCTCGGAGAAAAAGCAGC
TGCGCGAAACGCGGCGACATCATGGCGTGGCCACAGCCGCCATTTCATCA
GCATCCGCAACCGCATCCACCGCATCATCGTCCTCGTCCTTGTCCGTGGG
ATCCACATCTGCAGCTGCCGCCACACAAGCTAGTTCGGTGCTCAACCATG
TGGCCAAAGGTTCGATGAACTCGATGAGCCGCCGTCGACCGGCGCGATTA
CAGCGCAGGATGCCTCACATCCTTGCCCGCGTGTCCTCCTTCTCCACGGA
CACGAGCAGCGGCGTGGAAACGGAGGTGGAGATGGACTCCGAGCAGAGGA
TGCAGCTGGACGACGACCGCTACTCGGATGCCAGGATCCAGGGACTGCAG
CAACAGCCACATTCCAGCAGCGACAACATCAAGACAGTATTACAGCCGAC
GACGGCTAGCGGATATAGTAGCAAGCAGAACCGATCGGCCAGGGCCAAAA
ACTGTGATCGAGAGGTGCCGCTCCAGATAGAGGACGACCACGATGGCGAC
AGTGGGTACGAGTACAGCCAGGATCCCATAAAGGAGCAGCACATGTACCA
CCAGAATAGCGAAGGCCTGTTGTCCATTGCCATCAAGACTATCAAGCTGG
TGCAGCGCAACAAGCTGCTGCAAAAGCGATTGGCCCAACTGCAGCTGGAG
ACCTCGGAGTTCATTGCCTCGGTGCTGGCCAACCCGGAAAATCGCCAATT
CCGTGACAAAATGTCGCCAAAGGCAGAGGCCAAGGTCAGCAACATGCTGC
TGCGCCACGCAAGCTTTCTAGACC
BO04907.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31324-PA | 795 | CG31324-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31324-RB | 3856 | CG31324-RB | 2002..2793 | 17..808 | 3960 | 100 | Plus |
CG31324-RA | 1885 | CG31324-RA | 515..1306 | 17..808 | 3960 | 100 | Plus |
CG31324-RC | 1256 | CG31324-RC | 70..677 | 201..808 | 3040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26129003..26129611 | 200..808 | 3045 | 100 | Plus |
3R | 32079331 | 3R | 26124474..26124657 | 17..200 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:23:58 has no hits.
BO04907.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:47 Download gff for
BO04907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-PA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:30:28 Download gff for
BO04907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-PA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:08:25 Download gff for
BO04907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 510..1312 | 10..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:32 Download gff for
BO04907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 510..1312 | 10..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:32 Download gff for
BO04907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26124469..26124657 | 10..200 | 97 | -> | Plus |
3R | 26129004..26129610 | 201..807 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:08:25 Download gff for
BO04907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21950191..21950379 | 10..200 | 97 | -> | Plus |
arm_3R | 21954726..21955332 | 201..807 | 100 | <- | Plus |
BO04907.complete Sequence
826 bp (826 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629927
> BO04907.complete
GAAGTTATCAGTCGACATGGCGCCCACCATATGCTCGGAGAAAAAGCAGC
TGCGCGAAACGCGGCGACATCATGGCGTGGCCACAGCCGCCATTTCATCA
GCATCCGCAACCGCATCCACCGCATCATCGTCCTCGTCCTTGTCCGTGGG
ATCCACATCTGCAGCTGCCGCCACACAAGCTAGTTCGGTGCTCAACCATG
TGGCCAAAGGTTCGATGAACTCGATGAGCCGCCGTCGACCGGCGCGATTA
CAGCGCAGGATGCCTCACATCCTTGCCCGCGTGTCCTCCTTCTCCACGGA
CACGAGCAGCGGCGTGGAAACGGAGGTGGAGATGGACTCCGAGCAGAGGA
TGCAGCTGGACGACGACCGCTACTCGGATGCCAGGATCCAGGGACTGCAG
CAACAGCCACATTCCAGCAGCGACAACATCAAGACAGTATTACAGCCGAC
GACGGCTAGCGGATATAGTAGCAAGCAGAACCGATCGGCCAGGGCCAAAA
ACTGTGATCGAGAGGTGCCGCTCCAGATAGAGGACGACCACGATGGCGAC
AGTGGGTACGAGTACAGCCAGGATCCCATAAAGGAGCAGCACATGTACCA
CCAGAATAGCGAAGGCCTGTTGTCCATTGCCATCAAGACTATCAAGCTGG
TGCAGCGCAACAAGCTGCTGCAAAAGCGATTGGCCCAACTGCAGCTGGAG
ACCTCGGAGTTCATTGCCTCGGTGCTGGCCAACCCGGAAAATCGCCAATT
CCGTGACAAAATGTCGCCAAAGGCAGAGGCCAAGGTCAGCAACATGCTGC
TGCGCCACGCAAGCTTTCTAGACCAT
BO04907.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:16:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31324-RB | 795 | CG31324-PB | 1..792 | 17..808 | 3960 | 100 | Plus |
CG31324-RA | 795 | CG31324-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
CG31324-RC | 612 | CG31324-PC | 2..609 | 201..808 | 3040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31324-RB | 3856 | CG31324-RB | 2002..2793 | 17..808 | 3960 | 100 | Plus |
CG31324-RA | 1885 | CG31324-RA | 515..1306 | 17..808 | 3960 | 100 | Plus |
CG31324-RC | 1256 | CG31324-RC | 70..677 | 201..808 | 3040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26129003..26129611 | 200..808 | 3045 | 100 | Plus |
3R | 32079331 | 3R | 26124474..26124657 | 17..200 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:16:41 has no hits.
BO04907.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:37 Download gff for
BO04907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:13 Download gff for
BO04907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 512..1314 | 10..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:12 Download gff for
BO04907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 515..1306 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:37 Download gff for
BO04907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 512..1314 | 10..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:00 Download gff for
BO04907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 515..1306 | 17..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:00 Download gff for
BO04907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26124474..26124657 | 17..200 | 100 | -> | Plus |
3R | 26129004..26129611 | 201..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:12 Download gff for
BO04907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21950196..21950379 | 17..200 | 100 | -> | Plus |
arm_3R | 21954726..21955333 | 201..810 | 99 | | Plus |
BO04907.pep Sequence
Translation from 16 to 826
> BO04907.pep
MAPTICSEKKQLRETRRHHGVATAAISSASATASTASSSSSLSVGSTSAA
AATQASSVLNHVAKGSMNSMSRRRPARLQRRMPHILARVSSFSTDTSSGV
ETEVEMDSEQRMQLDDDRYSDARIQGLQQQPHSSSDNIKTVLQPTTASGY
SSKQNRSARAKNCDREVPLQIEDDHDGDSGYEYSQDPIKEQHMYHQNSEG
LLSIAIKTIKLVQRNKLLQKRLAQLQLETSEFIASVLANPENRQFRDKMS
PKAEAKVSNMLLRHASFLDH
BO04907.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31324-PB | 264 | CG31324-PB | 1..264 | 1..264 | 1310 | 100 | Plus |
CG31324-PA | 264 | CG31324-PA | 1..264 | 1..264 | 1310 | 100 | Plus |
CG31324-PC | 203 | CG31324-PC | 1..203 | 62..264 | 1020 | 99.5 | Plus |