Clone BO04907 Report

Search the DGRC for BO04907

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:49
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG31324-RA
Protein status:BO04907.pep: validated full length
Sequenced Size:826

Clone Sequence Records

BO04907.3prime Sequence

824 bp (729 high quality bases) assembled on 2005-12-02

> BO04907.3prime
ATGGTCTAGAAAGCTTGCGTGGCGCAGCAGCATGTTGCTGACCTTGGCCT
CTGCCTTTGGCGACATTTTGTCACGGAATTGGCGATTTTCCGGGTTGGCC
AGCACCGAGGCAATGAACTCCGAGGTCTCCAGCTGCAGTTGGGCCAATCG
CTTTTGCAGCAGCTTGTTGCGCTGCACCAGCTTGATAGTCTTGATGGCAA
TGGACAACAGGCCTTCGCTATTCTGGTGGTACATGTGCTGCTCCTTTATG
GGATCCTGGCTGTACTCGTACCCACTGTCGCCATCGTGGTCGTCCTCTAT
CTGGAGCGGCACCTCTCGATCACAGTTTTTGGCCCTGGCCGATCGGTTCT
GCTTGCTACTATATCCGCTAGCCGTCGTCGGCTGTAATACTGTCTTGATG
TTGTCGCTGCTGGAATGTGGCTGTTGCTGCAGTCCCTGGATCCTGGCATC
CGAGTAGCGGTCGTCGTCCAGCTGCATCCTCTGCTCGGAGTCCATCTCCA
CCTCCGTTTCCACGCCGCTGCTCGTGTCCGTGGAGAAGGAGGACACGCGG
GCAAGGATGTGAGGCATCCTGCGCTGTAATCGCGCCGGTCGACGGCGGCT
CATCGAGTTCATCGAACCTTTGGCCACATGGTTGAGCACCGAACTAGCTT
GTGTGGCGGCAGCTGCAGATGTGGATCCCACGGACAAGGACGAGGACGAT
GATGCGGTGGATGCGGTTGCGGATGCTGATGAAATGGCGGCTGTGGCCAC
GCCATGATGTCGCCGCGTTTCGCGCAGCTGCTTTTTCTCCGAGCATATGG
TGGGCGCCATGTCGACTGATAACT

BO04907.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324-PA 795 CG31324-RA 1..792 810..19 3960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324-RB 3856 CG31324-RB 2002..2793 810..19 3960 100 Minus
CG31324-RA 1885 CG31324-RA 515..1306 810..19 3960 100 Minus
CG31324-RC 1256 CG31324-RC 70..677 626..19 3040 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26129003..26129611 627..19 3045 100 Minus
3R 32079331 3R 26124474..26124657 810..627 920 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:30:25 has no hits.

BO04907.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:47 Download gff for BO04907.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31324-PA 1..795 15..810 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:30:26 Download gff for BO04907.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31324-PA 1..795 15..810 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:42 Download gff for BO04907.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 510..1312 11..817 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:57 Download gff for BO04907.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 510..1312 11..817 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:57 Download gff for BO04907.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26124469..26124657 627..817 97 -> Minus
3R 26129004..26129610 20..626 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:42 Download gff for BO04907.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21950191..21950379 627..817 97 -> Minus
arm_3R 21954726..21955332 20..626 100 <- Minus

BO04907.5prime Sequence

824 bp (755 high quality bases) assembled on 2005-11-29

> BO04907.5prime
GAAGTTATCAGTCGACATGGCGCCCACCATATGCTCGGAGAAAAAGCAGC
TGCGCGAAACGCGGCGACATCATGGCGTGGCCACAGCCGCCATTTCATCA
GCATCCGCAACCGCATCCACCGCATCATCGTCCTCGTCCTTGTCCGTGGG
ATCCACATCTGCAGCTGCCGCCACACAAGCTAGTTCGGTGCTCAACCATG
TGGCCAAAGGTTCGATGAACTCGATGAGCCGCCGTCGACCGGCGCGATTA
CAGCGCAGGATGCCTCACATCCTTGCCCGCGTGTCCTCCTTCTCCACGGA
CACGAGCAGCGGCGTGGAAACGGAGGTGGAGATGGACTCCGAGCAGAGGA
TGCAGCTGGACGACGACCGCTACTCGGATGCCAGGATCCAGGGACTGCAG
CAACAGCCACATTCCAGCAGCGACAACATCAAGACAGTATTACAGCCGAC
GACGGCTAGCGGATATAGTAGCAAGCAGAACCGATCGGCCAGGGCCAAAA
ACTGTGATCGAGAGGTGCCGCTCCAGATAGAGGACGACCACGATGGCGAC
AGTGGGTACGAGTACAGCCAGGATCCCATAAAGGAGCAGCACATGTACCA
CCAGAATAGCGAAGGCCTGTTGTCCATTGCCATCAAGACTATCAAGCTGG
TGCAGCGCAACAAGCTGCTGCAAAAGCGATTGGCCCAACTGCAGCTGGAG
ACCTCGGAGTTCATTGCCTCGGTGCTGGCCAACCCGGAAAATCGCCAATT
CCGTGACAAAATGTCGCCAAAGGCAGAGGCCAAGGTCAGCAACATGCTGC
TGCGCCACGCAAGCTTTCTAGACC

BO04907.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324-PA 795 CG31324-RA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324-RB 3856 CG31324-RB 2002..2793 17..808 3960 100 Plus
CG31324-RA 1885 CG31324-RA 515..1306 17..808 3960 100 Plus
CG31324-RC 1256 CG31324-RC 70..677 201..808 3040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26129003..26129611 200..808 3045 100 Plus
3R 32079331 3R 26124474..26124657 17..200 920 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:23:58 has no hits.

BO04907.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:47 Download gff for BO04907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31324-PA 1..795 17..812 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:30:28 Download gff for BO04907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31324-PA 1..795 17..812 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:08:25 Download gff for BO04907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 510..1312 10..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:32 Download gff for BO04907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 510..1312 10..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:32 Download gff for BO04907.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26124469..26124657 10..200 97 -> Plus
3R 26129004..26129610 201..807 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:08:25 Download gff for BO04907.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21950191..21950379 10..200 97 -> Plus
arm_3R 21954726..21955332 201..807 100 <- Plus

BO04907.complete Sequence

826 bp (826 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629927

> BO04907.complete
GAAGTTATCAGTCGACATGGCGCCCACCATATGCTCGGAGAAAAAGCAGC
TGCGCGAAACGCGGCGACATCATGGCGTGGCCACAGCCGCCATTTCATCA
GCATCCGCAACCGCATCCACCGCATCATCGTCCTCGTCCTTGTCCGTGGG
ATCCACATCTGCAGCTGCCGCCACACAAGCTAGTTCGGTGCTCAACCATG
TGGCCAAAGGTTCGATGAACTCGATGAGCCGCCGTCGACCGGCGCGATTA
CAGCGCAGGATGCCTCACATCCTTGCCCGCGTGTCCTCCTTCTCCACGGA
CACGAGCAGCGGCGTGGAAACGGAGGTGGAGATGGACTCCGAGCAGAGGA
TGCAGCTGGACGACGACCGCTACTCGGATGCCAGGATCCAGGGACTGCAG
CAACAGCCACATTCCAGCAGCGACAACATCAAGACAGTATTACAGCCGAC
GACGGCTAGCGGATATAGTAGCAAGCAGAACCGATCGGCCAGGGCCAAAA
ACTGTGATCGAGAGGTGCCGCTCCAGATAGAGGACGACCACGATGGCGAC
AGTGGGTACGAGTACAGCCAGGATCCCATAAAGGAGCAGCACATGTACCA
CCAGAATAGCGAAGGCCTGTTGTCCATTGCCATCAAGACTATCAAGCTGG
TGCAGCGCAACAAGCTGCTGCAAAAGCGATTGGCCCAACTGCAGCTGGAG
ACCTCGGAGTTCATTGCCTCGGTGCTGGCCAACCCGGAAAATCGCCAATT
CCGTGACAAAATGTCGCCAAAGGCAGAGGCCAAGGTCAGCAACATGCTGC
TGCGCCACGCAAGCTTTCTAGACCAT

BO04907.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324-RB 795 CG31324-PB 1..792 17..808 3960 100 Plus
CG31324-RA 795 CG31324-PA 1..792 17..808 3960 100 Plus
CG31324-RC 612 CG31324-PC 2..609 201..808 3040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324-RB 3856 CG31324-RB 2002..2793 17..808 3960 100 Plus
CG31324-RA 1885 CG31324-RA 515..1306 17..808 3960 100 Plus
CG31324-RC 1256 CG31324-RC 70..677 201..808 3040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26129003..26129611 200..808 3045 100 Plus
3R 32079331 3R 26124474..26124657 17..200 920 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:16:41 has no hits.

BO04907.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:37 Download gff for BO04907.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 1..795 17..812 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:13 Download gff for BO04907.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 512..1314 10..816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:12 Download gff for BO04907.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 515..1306 17..810 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:37 Download gff for BO04907.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 512..1314 10..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:00 Download gff for BO04907.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 515..1306 17..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:00 Download gff for BO04907.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26124474..26124657 17..200 100 -> Plus
3R 26129004..26129611 201..810 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:12 Download gff for BO04907.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21950196..21950379 17..200 100 -> Plus
arm_3R 21954726..21955333 201..810 99   Plus

BO04907.pep Sequence

Translation from 16 to 826

> BO04907.pep
MAPTICSEKKQLRETRRHHGVATAAISSASATASTASSSSSLSVGSTSAA
AATQASSVLNHVAKGSMNSMSRRRPARLQRRMPHILARVSSFSTDTSSGV
ETEVEMDSEQRMQLDDDRYSDARIQGLQQQPHSSSDNIKTVLQPTTASGY
SSKQNRSARAKNCDREVPLQIEDDHDGDSGYEYSQDPIKEQHMYHQNSEG
LLSIAIKTIKLVQRNKLLQKRLAQLQLETSEFIASVLANPENRQFRDKMS
PKAEAKVSNMLLRHASFLDH

BO04907.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324-PB 264 CG31324-PB 1..264 1..264 1310 100 Plus
CG31324-PA 264 CG31324-PA 1..264 1..264 1310 100 Plus
CG31324-PC 203 CG31324-PC 1..203 62..264 1020 99.5 Plus