Clone BO04935 Report

Search the DGRC for BO04935

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:49
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG7974-RA
Protein status:BO04935.pep: validated full length
Sequenced Size:916

Clone Sequence Records

BO04935.3prime Sequence

826 bp (825 high quality bases) assembled on 2005-12-02

> BO04935.3prime
ATGGTCTAGAAAGCTTGCGTATCTGCGGAACTGCTTCCTAAACTTATCAT
AATGGTAGTCATCTGTGGCTCGCTTGACTCCATTGGGATTCGTCTGATGC
TGTGCGGATTTGTTGCCCTCCCTTTCCTCACGCTTGCGCCTCCTTTGATC
GCTGTTGTCCTCGATGTTGAATCGATTGTGTTGCATGAAGTTCACCGCCA
TGTTGGTGGGCACGAATTGCGAGGGTCCGTCCTTCTTGTTCTTGGCGTCC
TGCAGCAGCTTCTGCTTGGCTTCCTCGGTGGCCTCTATGTTGCGGATCTT
GGCCACAATGCCCAGGTCCACTTCAGGAATGCCATTGAGCATCTGGTTGG
ACAACATCTCCTCCGATCTGTGCGAGGAAGACTGCCTCAGGTGGTCGGGC
AGGGCGTACAGGGCGGCATCCTCGGGGGTCAGGTACTTGTTTACATCACC
GTCGTCCTCTGCTGCGTCCTCCGTGCCGCCTCCCTTGCGCTTCTGCAGCT
CCTGCTCGATGTACTTCATCATCTCCTCGTCCTCATCCCGCTTATTCGTC
TCCGCCGAGAACTGCGTGCCAATGCCCACGTCGTAGGCGTCGTCCGCCTC
CTTCATCTTGCCCGATTTCAGCTGCTTCATGTTGACCAGACCACCGGTCT
TCACATTAAAGGGATCCTTGATGGCCAGCTCCTCTTCTGGCGCGATCTTC
TTGCCCAGCGCCAGTCCCACAAGGCTGACGCCATTGGGTCGCTGCCTGAG
GCGCTGGCGTTCTTTAATCTCATCTAGCGTTAATTGTTCCTCCTTTTCTT
CTTCGTCTGAATTCTTGCGTTGCCTT

BO04935.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-PA 885 CG7974-RA 75..882 826..19 4040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-RB 1348 CG7974-RB 188..995 826..19 4040 100 Minus
CG7974-RA 1137 CG7974-RA 188..995 826..19 4040 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1665421..1666034 784..171 3070 100 Minus
3L 28110227 3L 1666090..1666241 170..19 760 100 Minus
3L 28110227 3L 1665325..1665366 826..785 210 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:32:11 has no hits.

BO04935.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:17 Download gff for BO04935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7974-PA 75..885 15..826 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:31:11 Download gff for BO04935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7974-PA 75..885 15..826 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:43:44 Download gff for BO04935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 188..1000 14..826 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:03 Download gff for BO04935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 188..1000 14..826 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:03 Download gff for BO04935.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1665325..1665366 785..826 100 -> Minus
3L 1665421..1666034 171..784 100 -> Minus
3L 1666090..1666246 14..170 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:43:44 Download gff for BO04935.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1665325..1665366 785..826 100 -> Minus
arm_3L 1665421..1666034 171..784 100 -> Minus
arm_3L 1666090..1666246 14..170 98   Minus

BO04935.5prime Sequence

885 bp (820 high quality bases) assembled on 2005-11-29

> BO04935.5prime
GAAGTTATCAGTCGACATGAGCGATGCAGAGGAAACAAAAGCAGAAGCCA
CCACCAAAGTGTTGTTCAAAAAAGCCGGTCGAAAAAACCTAAGGCAACGC
AAGAATTCAGACGAAGAAGAAAAGGAGGAACAATTAACGCTAGATGAGAT
TAAAGAACGCCAGCGCCTCAGGCAGCGACCCAATGGCGTCAGCCTTGTGG
GACTGGCGCTGGGCAAGAAGATCGCGCCAGAAGAGGAGCTGGCCATCAAG
GATCCCTTTAATGTGAAGACCGGTGGTCTGGTCAACATGAAGCAGCTGAA
ATCGGGCAAGATGAAGGAGGCGGACGACGCCTACGACGTGGGCATTGGCA
CGCAGTTCTCGGCGGAGACGAATAAGCGGGATGAGGACGAGGAGATGATG
AAGTACATCGAGCAGGAGCTGCAGAAGCGCAAGGGAGGCGGCACGGAGGA
CGCAGCAGAGGACGACGGTGATGTAAACAAGTACCTGACCCCCGAGGATG
CCGCCCTGTACGCCCTGCCCGACCACCTGAGGCAGTCTTCCTCGCACAGA
TCGGAGGAGATGTTGTCCAACCAGATGCTCAATGGCATTCCTGAAGTGGA
CCTGGGCATTGTGGCCAAGATCCGCAACATAGAGGCCACCGAGGAAGCCA
AGCAGAAGCTGCTGCAGGACGCCAAGAACAAGAAGGACGGACCCTCGCAA
TTCGTGCCCACCAACATGGCGGTGAACTTCATGCAACACAATCGATTCAA
CATCGAGGACAACAGCGATCAAAGGAGGCGCAAGCGTGAGGAAAGGGAGG
GCAACAAATCCGCACAGCATCAGACGAATCCCAATGGAGTCAAGCGAGCC
ACAGATGACTACCATTATGATAAGTTTAGGAAGCA

BO04935.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-PA 885 CG7974-RA 1..869 17..885 4345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-RB 1348 CG7974-RB 113..982 16..885 4350 100 Plus
CG7974-RA 1137 CG7974-RA 113..982 16..885 4350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1665421..1666034 133..746 3070 100 Plus
3L 28110227 3L 1666090..1666228 747..885 695 100 Plus
3L 28110227 3L 1665250..1665366 16..132 585 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:31:03 has no hits.

BO04935.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:18 Download gff for BO04935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7974-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:31:12 Download gff for BO04935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7974-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:47 Download gff for BO04935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 113..981 16..884 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:08 Download gff for BO04935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 113..981 16..884 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:08 Download gff for BO04935.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1665250..1665366 16..132 100 -> Plus
3L 1665421..1666034 133..746 100 -> Plus
3L 1666090..1666227 747..884 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:47 Download gff for BO04935.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1665250..1665366 16..132 100 -> Plus
arm_3L 1665421..1666034 133..746 100 -> Plus
arm_3L 1666090..1666227 747..884 100   Plus

BO04935.complete Sequence

916 bp (916 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629928

> BO04935.complete
GAAGTTATCAGTCGACATGAGCGATGCAGAGGAAACAAAAGCAGAAGCCA
CCACCAAAGTGTTGTTCAAAAAAGCCGGTCGAAAAAACCTAAGGCAACGC
AAGAATTCAGACGAAGAAGAAAAGGAGGAACAATTAACGCTAGATGAGAT
TAAAGAACGCCAGCGCCTCAGGCAGCGACCCAATGGCGTCAGCCTTGTGG
GACTGGCGCTGGGCAAGAAGATCGCGCCAGAAGAGGAGCTGGCCATCAAG
GATCCCTTTAATGTGAAGACCGGTGGTCTGGTCAACATGAAGCAGCTGAA
ATCGGGCAAGATGAAGGAGGCGGACGACGCCTACGACGTGGGCATTGGCA
CGCAGTTCTCGGCGGAGACGAATAAGCGGGATGAGGACGAGGAGATGATG
AAGTACATCGAGCAGGAGCTGCAGAAGCGCAAGGGAGGCGGCACGGAGGA
CGCAGCAGAGGACGACGGTGATGTAAACAAGTACCTGACCCCCGAGGATG
CCGCCCTGTACGCCCTGCCCGACCACCTGAGGCAGTCTTCCTCGCACAGA
TCGGAGGAGATGTTGTCCAACCAGATGCTCAATGGCATTCCTGAAGTGGA
CCTGGGCATTGTGGCCAAGATCCGCAACATAGAGGCCACCGAGGAAGCCA
AGCAGAAGCTGCTGCAGGACGCCAAGAACAAGAAGGACGGACCCTCGCAA
TTCGTGCCCACCAACATGGCGGTGAACTTCATGCAACACAATCGATTCAA
CATCGAGGACAACAGCGATCAAAGGAGGCGCAAGCGTGAGGAAAGGGAGG
GCAACAAATCCGCACAGCATCAGACGAATCCCAATGGAGTCAAGCGAGCC
ACAGATGACTACCATTATGATAAGTTTAGGAAGCAGTTCCGCAGATACGC
AAGCTTTCTAGACCAT

BO04935.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-RB 885 CG7974-PB 1..882 17..898 4410 100 Plus
CG7974-RA 885 CG7974-PA 1..882 17..898 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-RB 1348 CG7974-RB 113..995 16..898 4415 100 Plus
CG7974-RA 1137 CG7974-RA 113..995 16..898 4415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1665421..1666034 133..746 3070 100 Plus
3L 28110227 3L 1666090..1666241 747..898 760 100 Plus
3L 28110227 3L 1665250..1665366 16..132 585 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:50:27 has no hits.

BO04935.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:42 Download gff for BO04935.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 1..885 17..902 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:20 Download gff for BO04935.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 108..995 16..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:32 Download gff for BO04935.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 114..995 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:42 Download gff for BO04935.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 108..995 16..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:20 Download gff for BO04935.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 114..995 17..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:20 Download gff for BO04935.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1665251..1665366 17..132 100 -> Plus
3L 1665421..1666034 133..746 100 -> Plus
3L 1666090..1666241 747..900 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:32 Download gff for BO04935.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1665251..1665366 17..132 100 -> Plus
arm_3L 1665421..1666034 133..746 100 -> Plus
arm_3L 1666090..1666241 747..900 98   Plus

BO04935.pep Sequence

Translation from 16 to 916

> BO04935.pep
MSDAEETKAEATTKVLFKKAGRKNLRQRKNSDEEEKEEQLTLDEIKERQR
LRQRPNGVSLVGLALGKKIAPEEELAIKDPFNVKTGGLVNMKQLKSGKMK
EADDAYDVGIGTQFSAETNKRDEDEEMMKYIEQELQKRKGGGTEDAAEDD
GDVNKYLTPEDAALYALPDHLRQSSSHRSEEMLSNQMLNGIPEVDLGIVA
KIRNIEATEEAKQKLLQDAKNKKDGPSQFVPTNMAVNFMQHNRFNIEDNS
DQRRRKREEREGNKSAQHQTNPNGVKRATDDYHYDKFRKQFRRYASFLDH

BO04935.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-PB 294 CG7974-PB 1..294 1..294 1507 100 Plus
CG7974-PA 294 CG7974-PA 1..294 1..294 1507 100 Plus