Clone Sequence Records
BO04935.3prime Sequence
826 bp (825 high quality bases) assembled on 2005-12-02
> BO04935.3prime
ATGGTCTAGAAAGCTTGCGTATCTGCGGAACTGCTTCCTAAACTTATCAT
AATGGTAGTCATCTGTGGCTCGCTTGACTCCATTGGGATTCGTCTGATGC
TGTGCGGATTTGTTGCCCTCCCTTTCCTCACGCTTGCGCCTCCTTTGATC
GCTGTTGTCCTCGATGTTGAATCGATTGTGTTGCATGAAGTTCACCGCCA
TGTTGGTGGGCACGAATTGCGAGGGTCCGTCCTTCTTGTTCTTGGCGTCC
TGCAGCAGCTTCTGCTTGGCTTCCTCGGTGGCCTCTATGTTGCGGATCTT
GGCCACAATGCCCAGGTCCACTTCAGGAATGCCATTGAGCATCTGGTTGG
ACAACATCTCCTCCGATCTGTGCGAGGAAGACTGCCTCAGGTGGTCGGGC
AGGGCGTACAGGGCGGCATCCTCGGGGGTCAGGTACTTGTTTACATCACC
GTCGTCCTCTGCTGCGTCCTCCGTGCCGCCTCCCTTGCGCTTCTGCAGCT
CCTGCTCGATGTACTTCATCATCTCCTCGTCCTCATCCCGCTTATTCGTC
TCCGCCGAGAACTGCGTGCCAATGCCCACGTCGTAGGCGTCGTCCGCCTC
CTTCATCTTGCCCGATTTCAGCTGCTTCATGTTGACCAGACCACCGGTCT
TCACATTAAAGGGATCCTTGATGGCCAGCTCCTCTTCTGGCGCGATCTTC
TTGCCCAGCGCCAGTCCCACAAGGCTGACGCCATTGGGTCGCTGCCTGAG
GCGCTGGCGTTCTTTAATCTCATCTAGCGTTAATTGTTCCTCCTTTTCTT
CTTCGTCTGAATTCTTGCGTTGCCTT
BO04935.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7974-PA | 885 | CG7974-RA | 75..882 | 826..19 | 4040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7974-RB | 1348 | CG7974-RB | 188..995 | 826..19 | 4040 | 100 | Minus |
CG7974-RA | 1137 | CG7974-RA | 188..995 | 826..19 | 4040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1665421..1666034 | 784..171 | 3070 | 100 | Minus |
3L | 28110227 | 3L | 1666090..1666241 | 170..19 | 760 | 100 | Minus |
3L | 28110227 | 3L | 1665325..1665366 | 826..785 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:32:11 has no hits.
BO04935.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:17 Download gff for
BO04935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-PA | 75..885 | 15..826 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:31:11 Download gff for
BO04935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-PA | 75..885 | 15..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:43:44 Download gff for
BO04935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 188..1000 | 14..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:03 Download gff for
BO04935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 188..1000 | 14..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:03 Download gff for
BO04935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1665325..1665366 | 785..826 | 100 | -> | Minus |
3L | 1665421..1666034 | 171..784 | 100 | -> | Minus |
3L | 1666090..1666246 | 14..170 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:43:44 Download gff for
BO04935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1665325..1665366 | 785..826 | 100 | -> | Minus |
arm_3L | 1665421..1666034 | 171..784 | 100 | -> | Minus |
arm_3L | 1666090..1666246 | 14..170 | 98 | | Minus |
BO04935.5prime Sequence
885 bp (820 high quality bases) assembled on 2005-11-29
> BO04935.5prime
GAAGTTATCAGTCGACATGAGCGATGCAGAGGAAACAAAAGCAGAAGCCA
CCACCAAAGTGTTGTTCAAAAAAGCCGGTCGAAAAAACCTAAGGCAACGC
AAGAATTCAGACGAAGAAGAAAAGGAGGAACAATTAACGCTAGATGAGAT
TAAAGAACGCCAGCGCCTCAGGCAGCGACCCAATGGCGTCAGCCTTGTGG
GACTGGCGCTGGGCAAGAAGATCGCGCCAGAAGAGGAGCTGGCCATCAAG
GATCCCTTTAATGTGAAGACCGGTGGTCTGGTCAACATGAAGCAGCTGAA
ATCGGGCAAGATGAAGGAGGCGGACGACGCCTACGACGTGGGCATTGGCA
CGCAGTTCTCGGCGGAGACGAATAAGCGGGATGAGGACGAGGAGATGATG
AAGTACATCGAGCAGGAGCTGCAGAAGCGCAAGGGAGGCGGCACGGAGGA
CGCAGCAGAGGACGACGGTGATGTAAACAAGTACCTGACCCCCGAGGATG
CCGCCCTGTACGCCCTGCCCGACCACCTGAGGCAGTCTTCCTCGCACAGA
TCGGAGGAGATGTTGTCCAACCAGATGCTCAATGGCATTCCTGAAGTGGA
CCTGGGCATTGTGGCCAAGATCCGCAACATAGAGGCCACCGAGGAAGCCA
AGCAGAAGCTGCTGCAGGACGCCAAGAACAAGAAGGACGGACCCTCGCAA
TTCGTGCCCACCAACATGGCGGTGAACTTCATGCAACACAATCGATTCAA
CATCGAGGACAACAGCGATCAAAGGAGGCGCAAGCGTGAGGAAAGGGAGG
GCAACAAATCCGCACAGCATCAGACGAATCCCAATGGAGTCAAGCGAGCC
ACAGATGACTACCATTATGATAAGTTTAGGAAGCA
BO04935.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7974-PA | 885 | CG7974-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7974-RB | 1348 | CG7974-RB | 113..982 | 16..885 | 4350 | 100 | Plus |
CG7974-RA | 1137 | CG7974-RA | 113..982 | 16..885 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1665421..1666034 | 133..746 | 3070 | 100 | Plus |
3L | 28110227 | 3L | 1666090..1666228 | 747..885 | 695 | 100 | Plus |
3L | 28110227 | 3L | 1665250..1665366 | 16..132 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:31:03 has no hits.
BO04935.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:18 Download gff for
BO04935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:31:12 Download gff for
BO04935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:47 Download gff for
BO04935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 113..981 | 16..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:08 Download gff for
BO04935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 113..981 | 16..884 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:08 Download gff for
BO04935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1665250..1665366 | 16..132 | 100 | -> | Plus |
3L | 1665421..1666034 | 133..746 | 100 | -> | Plus |
3L | 1666090..1666227 | 747..884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:47 Download gff for
BO04935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1665250..1665366 | 16..132 | 100 | -> | Plus |
arm_3L | 1665421..1666034 | 133..746 | 100 | -> | Plus |
arm_3L | 1666090..1666227 | 747..884 | 100 | | Plus |
BO04935.complete Sequence
916 bp (916 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629928
> BO04935.complete
GAAGTTATCAGTCGACATGAGCGATGCAGAGGAAACAAAAGCAGAAGCCA
CCACCAAAGTGTTGTTCAAAAAAGCCGGTCGAAAAAACCTAAGGCAACGC
AAGAATTCAGACGAAGAAGAAAAGGAGGAACAATTAACGCTAGATGAGAT
TAAAGAACGCCAGCGCCTCAGGCAGCGACCCAATGGCGTCAGCCTTGTGG
GACTGGCGCTGGGCAAGAAGATCGCGCCAGAAGAGGAGCTGGCCATCAAG
GATCCCTTTAATGTGAAGACCGGTGGTCTGGTCAACATGAAGCAGCTGAA
ATCGGGCAAGATGAAGGAGGCGGACGACGCCTACGACGTGGGCATTGGCA
CGCAGTTCTCGGCGGAGACGAATAAGCGGGATGAGGACGAGGAGATGATG
AAGTACATCGAGCAGGAGCTGCAGAAGCGCAAGGGAGGCGGCACGGAGGA
CGCAGCAGAGGACGACGGTGATGTAAACAAGTACCTGACCCCCGAGGATG
CCGCCCTGTACGCCCTGCCCGACCACCTGAGGCAGTCTTCCTCGCACAGA
TCGGAGGAGATGTTGTCCAACCAGATGCTCAATGGCATTCCTGAAGTGGA
CCTGGGCATTGTGGCCAAGATCCGCAACATAGAGGCCACCGAGGAAGCCA
AGCAGAAGCTGCTGCAGGACGCCAAGAACAAGAAGGACGGACCCTCGCAA
TTCGTGCCCACCAACATGGCGGTGAACTTCATGCAACACAATCGATTCAA
CATCGAGGACAACAGCGATCAAAGGAGGCGCAAGCGTGAGGAAAGGGAGG
GCAACAAATCCGCACAGCATCAGACGAATCCCAATGGAGTCAAGCGAGCC
ACAGATGACTACCATTATGATAAGTTTAGGAAGCAGTTCCGCAGATACGC
AAGCTTTCTAGACCAT
BO04935.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7974-RB | 885 | CG7974-PB | 1..882 | 17..898 | 4410 | 100 | Plus |
CG7974-RA | 885 | CG7974-PA | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:50:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7974-RB | 1348 | CG7974-RB | 113..995 | 16..898 | 4415 | 100 | Plus |
CG7974-RA | 1137 | CG7974-RA | 113..995 | 16..898 | 4415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1665421..1666034 | 133..746 | 3070 | 100 | Plus |
3L | 28110227 | 3L | 1666090..1666241 | 747..898 | 760 | 100 | Plus |
3L | 28110227 | 3L | 1665250..1665366 | 16..132 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:50:27 has no hits.
BO04935.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:42 Download gff for
BO04935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 1..885 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:20 Download gff for
BO04935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 108..995 | 16..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:32 Download gff for
BO04935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 114..995 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:42 Download gff for
BO04935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 108..995 | 16..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:20 Download gff for
BO04935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 114..995 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:20 Download gff for
BO04935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1665251..1665366 | 17..132 | 100 | -> | Plus |
3L | 1665421..1666034 | 133..746 | 100 | -> | Plus |
3L | 1666090..1666241 | 747..900 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:32 Download gff for
BO04935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1665251..1665366 | 17..132 | 100 | -> | Plus |
arm_3L | 1665421..1666034 | 133..746 | 100 | -> | Plus |
arm_3L | 1666090..1666241 | 747..900 | 98 | | Plus |
BO04935.pep Sequence
Translation from 16 to 916
> BO04935.pep
MSDAEETKAEATTKVLFKKAGRKNLRQRKNSDEEEKEEQLTLDEIKERQR
LRQRPNGVSLVGLALGKKIAPEEELAIKDPFNVKTGGLVNMKQLKSGKMK
EADDAYDVGIGTQFSAETNKRDEDEEMMKYIEQELQKRKGGGTEDAAEDD
GDVNKYLTPEDAALYALPDHLRQSSSHRSEEMLSNQMLNGIPEVDLGIVA
KIRNIEATEEAKQKLLQDAKNKKDGPSQFVPTNMAVNFMQHNRFNIEDNS
DQRRRKREEREGNKSAQHQTNPNGVKRATDDYHYDKFRKQFRRYASFLDH
BO04935.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7974-PB | 294 | CG7974-PB | 1..294 | 1..294 | 1507 | 100 | Plus |
CG7974-PA | 294 | CG7974-PA | 1..294 | 1..294 | 1507 | 100 | Plus |