Clone Sequence Records
BO04939.3prime Sequence
925 bp (791 high quality bases) assembled on 2005-12-02
> BO04939.3prime
ATGGTCTAGAAAGCTTGCTTTAGAAAAATTAAACGGAGCTCTATAAGAAT
ACATCATGGAGTTAAAAGGGGCGCCCGGGGCGCCTAGAAGGGGAAATGGA
AACACTTGAGGAGGTAGACTGGCTGCGGCCGATACGGAGGCTTTGGTGCC
TCGTTTCCGCTTCTGTTTGGACACAGGAGCTGGGTGAGGCTCTTCGCTGG
ACTCCGAGTCATCGCTCTCGCTGCTGTCATCTTCATCTTCGTCGTCATCT
TCCTCGTCATCTTCTTCGTCATGATCTTTCGGCTCCACCTTCATCCTTTT
CTGTGAAGACTTCTTTATCTTTTTTATTGACGCCTTTTTGTCCTTTTTGG
GTTTTGCTGAAACTGGAGCTGTGACTGTGCCAGCAGGAAATCCAAATCCT
TGCTCGCAATGAAAGGCAGTCATTTGCTGCATGGCAAACTCCACAAACGA
CTGGATGGCAATATTTAGATTGGGCGGGTTTGGACAGTTTTTGAGACCAT
GATAACTACCGGAGCAATTACGACATATCATCTGACACTGGAAGGAGGTG
TGGCCCTTCTTGTCGCATATGCCACACACATCCACGGTTTTACCCTTGTT
TTTTTGCTTTCTGGCCTTCTTGTCGTCTTCAGGTTCGGTGCTTTCCTCCT
CATCGGTAATGGTAAACTGGCGCTCCTGAGAGCCCATGCAGACAACATCC
TCCTCGGTGTTCTTTTCCATCTTTTTACTCTTTGCCGGCGGATGACTCTG
TTCATCATCGGTGTCGCTGTCCGAAGTTGAGGAGTCGGAGGACGAAACTG
GTTTTACAGCCTTTGGTTTCGGAGTTGATGCTACAGGTGTTTTGATGGCC
TTCGCTTTTGGGGACGGCACCACCACTGCCTTAGTGTTGACTACCATTTC
CCCTGGTTCGGGTTCAGACTCCTCT
BO04939.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11604-PA | 1620 | CG11604-RA | 711..1617 | 925..19 | 4535 | 100 | Minus |
| CG10840-PB | 3435 | eIF5B-RB | 1479..1518 | 262..223 | 150 | 95 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:31:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mbm-RA | 1756 | CG11604-RA | 792..1698 | 925..19 | 4535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 271970..272508 | 19..557 | 2695 | 100 | Plus |
| 2L | 23513712 | 2L | 272554..272924 | 555..925 | 1855 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:31:49 has no hits.
BO04939.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:23 Download gff for
BO04939.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11604-PA | 711..1620 | 18..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:31:19 Download gff for
BO04939.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11604-PA | 711..1620 | 18..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:18:12 Download gff for
BO04939.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbm-RA | 792..1703 | 11..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:36:50 Download gff for
BO04939.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbm-RA | 792..1703 | 11..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:36:50 Download gff for
BO04939.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 271965..272506 | 11..555 | 99 | <- | Plus |
| 2L | 272555..272924 | 556..925 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:18:12 Download gff for
BO04939.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 271965..272506 | 11..555 | 99 | <- | Plus |
| arm_2L | 272555..272924 | 556..925 | 100 | | Plus |
BO04939.5prime Sequence
759 bp (750 high quality bases) assembled on 2005-12-02
> BO04939.5prime
GAAGTTATCAGTCGACATGCACAACAGTGGAGGACAATCCGGCTGGAACC
TTTCAGGAGAGGAAAGAAAACCGTTTTCGAATTACGGCCGCAACAATCAG
CAGAGGCGCAGCAGTGGAGGCGGGGGAAGAGGCAGCCACAGCCAAAATCG
CGCCGCCAATGGAAACTGGCCAGACGCTGGATCGGAAGGTGGGCAGAATG
GAAACGCGTTTAACAAGTTCAGAGATCCCCAACAGGAGCTGGATAATCAT
CAGCCAAACAAGAGAGGGGGCCGAAGAAATAGAGGCGGTGGCGGAGGAGG
TGGTGGTTGGGGTGGCAGGCGAGGGAACCGCGGCAGAGATTCCAATAGGC
GTGGTGGCCGTAACAACTCGTGGCAACCTAAGGATCAGCATGTTAGTCCT
GGCCAAAGTAACATGCTGTACTTCGATAATGTGGGGGACTTTACCGAAGA
CCCACCTCTGCCTCGATCCTCGCCTGCTCCCTCCTCTCTCAGACAGGAGA
GCCTGCCACCTGTTACTTTCGCTGCGGACTTGACGCCACCACCACCTGTA
TCTGTTGCACCACCTGATGTGGCTGTTACGCCAGAAGAACCTACTGTGCC
GCTAATCAATATCAAGAAGGAGAAAGAAATGGAGCACAAGTCAAAAATAA
AGCAATTTGTCAAAGCGGAGCCCAAATCTCCTAAAAAGAAGAAGGTTAAC
TCCTCTAGGTCGTCATCTACTTCGGGAGAGGAGTCTGAACCCGAACCAGG
GGAAATGGT
BO04939.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11604-PA | 1620 | CG11604-RA | 1..743 | 17..759 | 3715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mbm-RA | 1756 | CG11604-RA | 82..824 | 17..759 | 3715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 272892..273634 | 759..17 | 3715 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 18:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 6649..6675 | 402..376 | 108 | 88.9 | Minus |
BO04939.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:24 Download gff for
BO04939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11604-PA | 1..743 | 17..759 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:31:20 Download gff for
BO04939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11604-PA | 1..743 | 17..759 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:11 Download gff for
BO04939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbm-RA | 78..824 | 9..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:56 Download gff for
BO04939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbm-RA | 78..824 | 9..759 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:56 Download gff for
BO04939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 272892..273638 | 9..759 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:11 Download gff for
BO04939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 272892..273638 | 9..759 | 99 | | Minus |
BO04939.complete Sequence
1651 bp (1651 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629929
> BO04939.complete
GAAGTTATCAGTCGACATGCACAACAGTGGAGGACAATCCGGCTGGAACC
TTTCAGGAGAGGAAAGAAAACCGTTTTCGAATTACGGCCGCAACAATCAG
CAGAGGCGCAGCAGTGGAGGCGGGGGAAGAGGCAGCCACAGCCAAAATCG
CGCCGCCAATGGAAACTGGCCAGACGCTGGATCGGAAGGTGGGCAGAATG
GAAACGCGTTTAACAAGTTCAGAGATCCCCAACAGGAGCTGGATAATCAT
CAGCCAAACAAGAGAGGGGGCCGAAGAAATAGAGGCGGTGGCGGAGGAGG
TGGTGGTTGGGGTGGCAGGCGAGGGAACCGCGGCAGAGATTCCAATAGGC
GTGGTGGCCGTAACAACTCGTGGCAACCTAAGGATCAGCATGTTAGTCCT
GGCCAAAGTAACATGCTGTACTTCGATAATGTGGGGGACTTTACCGAAGA
CCCACCTCTGCCTCGATCCTCGCCTGCTCCCTCCTCTCTCAGACAGGAGA
GCCTGCCACCTGTTACTTTCGCTGCGGACTTGACGCCACCACCACCTGTA
TCTGTTGCACCACCTGATGTGGCTGTTACGCCAGAAGAACCTACTGTGCC
GCTAATCAATATCAAGAAGGAGAAAGAAATGGAGCACAAGTCAAAAATAA
AGCAATTTGTCAAAGCGGAGCCCAAATCTCCTAAAAAGAAGAAGGTTAAC
TCCTCTAGGTCGTCATCTACTTCGGGAGAGGAGTCTGAACCCGAACCAGG
GGAAATGGTAGTCAACACTAAGGCAGTGGTGGTGCCGTCCCCAAAAGCGA
AGGCCATCAAAACACCTGTAGCATCAACTCCGAAACCAAAGGCTGTAAAA
CCAGTTTCGTCCTCCGACTCCTCAACTTCGGACAGCGACACCGATGATGA
ACAGAGTCATCCGCCGGCAAAGAGTAAAAAGATGGAAAAGAACACCGAGG
AGGATGTTGTCTGCATGGGCTCTCAGGAGCGCCAGTTTACCATTACCGAT
GAGGAGGAAAGCACCGAACCTGAAGACGACAAGAAGGCCAGAAAGCAAAA
AAACAAGGGTAAAACCGTGGATGTGTGTGGCATATGCGACAAGAAGGGCC
ACACCTCCTTCCAGTGTCAGATGATATGTCGTAATTGCTCCGGTAGTTAT
CATGGTCTCAAAAACTGTCCAAACCCGCCCAATCTAAATATTGCCATCCA
GTCGTTTGTGGAGTTTGCCATGCAGCAAATGACTGCCTTTCATTGCGAGC
AAGGATTTGGATTTCCTGCTGGCACAGTCACAGCTCCAGTTTCAGCAAAA
CCCAAAAAGGACAAAAAGGCGTCAATAAAAAAGATAAAGAAGTCTTCACA
GAAAAGGATGAAGGTGGAGCCGAAAGATCATGACGAAGAAGATGACGAGG
AAGATGACGACGAAGATGAAGATGACAGCAGCGAGAGCGATGACTCGGAG
TCCAGCGAAGAGCCTCACCCAGCTCCTGTGTCCAAACAGAAGCGGAAACG
AGGCACCAAAGCCTCCGTATCGGCCGCAGCCAGTCTACCTCCTCAAGTGT
TTCCATTTCCCCTTCTAGGCGCCCCGGGCGCCCCTTTTAACTCCATGATG
TATTCTTATAGAGCTCCGTTTAATTTTTCTAAAGCAAGCTTTCTAGACCA
T
BO04939.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mbm-RA | 1620 | CG11604-PA | 1..1617 | 17..1633 | 8085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mbm-RA | 1756 | CG11604-RA | 82..1698 | 17..1633 | 8085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 272554..273634 | 1097..17 | 5405 | 100 | Minus |
| 2L | 23513712 | 2L | 271970..272508 | 1633..1095 | 2695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:16:37 has no hits.
BO04939.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:07 Download gff for
BO04939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbm-RA | 1..1620 | 17..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:09 Download gff for
BO04939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbm-RA | 459..2084 | 9..1641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:36 Download gff for
BO04939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbm-RA | 82..1698 | 17..1635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:07 Download gff for
BO04939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbm-RA | 459..2084 | 9..1641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:29 Download gff for
BO04939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbm-RA | 82..1698 | 17..1635 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:29 Download gff for
BO04939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 271968..272506 | 1097..1635 | 99 | <- | Minus |
| 2L | 272555..273634 | 17..1096 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:36 Download gff for
BO04939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 271968..272506 | 1097..1635 | 99 | <- | Minus |
| arm_2L | 272555..273634 | 17..1096 | 100 | | Minus |
BO04939.pep Sequence
Translation from 16 to 1651
> BO04939.pep
MHNSGGQSGWNLSGEERKPFSNYGRNNQQRRSSGGGGRGSHSQNRAANGN
WPDAGSEGGQNGNAFNKFRDPQQELDNHQPNKRGGRRNRGGGGGGGGWGG
RRGNRGRDSNRRGGRNNSWQPKDQHVSPGQSNMLYFDNVGDFTEDPPLPR
SSPAPSSLRQESLPPVTFAADLTPPPPVSVAPPDVAVTPEEPTVPLINIK
KEKEMEHKSKIKQFVKAEPKSPKKKKVNSSRSSSTSGEESEPEPGEMVVN
TKAVVVPSPKAKAIKTPVASTPKPKAVKPVSSSDSSTSDSDTDDEQSHPP
AKSKKMEKNTEEDVVCMGSQERQFTITDEEESTEPEDDKKARKQKNKGKT
VDVCGICDKKGHTSFQCQMICRNCSGSYHGLKNCPNPPNLNIAIQSFVEF
AMQQMTAFHCEQGFGFPAGTVTAPVSAKPKKDKKASIKKIKKSSQKRMKV
EPKDHDEEDDEEDDDEDEDDSSESDDSESSEEPHPAPVSKQKRKRGTKAS
VSAAASLPPQVFPFPLLGAPGAPFNSMMYSYRAPFNFSKASFLDH
BO04939.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mbm-PA | 539 | CG11604-PA | 1..539 | 1..539 | 2883 | 100 | Plus |
