Clone Sequence Records
BO04950.complete Sequence
1690 bp assembled on 2009-07-30
> BO04950.complete
GAAGTTATCAGTCGACATGAAAGGCAATCATTATAAAATGTCTCGTAACA
AAGACAAATACGACAGCGCCAATCGGCGGCAGCAGATCTTTCTGTCGCAG
GAGGACATAGCTGCGGGCAAGAAGACGAACTGGAGTGGCCTAGAGATTAC
TGGCTGCGTCCGCAATATCAGCCCGTCGCTGTGGGAATTTGAGCATCTAA
CCGCCCTCTACCTGAACGACAACCAGCTGCTGCGATTGCCCGCAGACGTT
GGCATGCTGACCAGCCTCCGAACTTTGGACCTGTCCAGCAATAAGCTAAG
AAGTCTTCCCGCAGAGCTCGGCGAGCTCATCCAGTTGCGGGAGCTGTTGC
TGAACAACAACTTTCTGCGCGTACTGCCTTACGAGATCGGCAAGCTGTTC
CACCTCGTCATACTCGGCCTCATGGGCAATCCGCTGCAAAAGGAGTTCAT
GAACATCTACAACGAACCGAACGGCACGCAGAAACTGCTCACCTACATGC
TGGACAACTTGTCATTTACCGTGAATCCACCGCCCCAGAGGCCCTGGCTG
CCACTGGCCAAGCCCAACAAAACGCGACCAGCCTGCATTTTTACGGTCAT
GTGCTATAATGTGCTCTGCGACAAGTACGCGACGCGACAAATGTACGGAT
ACTGTCCGTCGTGGGCGCTATGCTGGGAGTACCGAAAAAAGTCGATTATC
GACGAGATACGGCACTATGCAGCGGACATTATCAGTCTGCAGGAGATCGA
AACGGAGCAATTCTATCACTTCTTCCTGCCGGAACTCAAGAACGATGGGT
ACGAGGGAATCTTCTCACCGAAGTCGCGTGCTAAGACTATGTCCGAGCTG
GAGAGGAAGTACGTCGATGGCTGTGCGATATTCTTCAGGGCGTCCAAGTT
TACGCTGATCAAGGAATCATTGATCGAGTTCAATCAGCTGGCAATGGCCA
ATGCCGAGGGCTCCGACAACATGCTGAACCGCGTAATGCCTAAGGATAAC
ATCGGTCTGGCCGCACTGCTCAAGGTGAAGGAGAACGCATGGGAGCCGAT
GTCCGAGGTGACGCAGATCTCGCAGCCGCTGCTCGTCTGCACGGCGCACA
TACACTGGGACCCTGAGTTCTGCGACGTCAAGCTCATCCAGACGATGATG
CTTAGCAATGAGTTGAAGACGATCATCGACGAGGCGAGCCACAGTTTCCG
ACCTGGTCACAAGAACGACTCCAATGCTGTCCAGCTGCTGCTGTGCGGTG
ACTTCAACTCGCTACCCGATTCAGGCGTTGTGGAGTTTCTCGGCAAGGGC
CGCGTTTCCATGGATCATTTGGACTTCAAGGACATGGGCTACAAGTCCTG
CCTGCAGCGGCTGCTCTCGAACGACACCAACGAGTTTACGCACTCGTTCA
AGCTAGCCTCCGCCTACAACGAGGACATAATGCCGCACACCAACTATACG
TTCGATTTTAAGGGCATCATCGACTACATTTTCTACACGAAGACGGGCAT
GGTGCCGCTGGGCCTGCTGGGTCCTGTCTCCAATGATTGGCTGCGCGAGA
ATAAGGTTGTTGGATGCCCACATCCGCATATACCCTCTGATCACTTCCCA
CTGCTGGTCGAGCTAGAGCTGATGCATACGGCTAGCCAACAGGCGCCTCC
TAACGGGCTGATCAATCGCCGGGCAAGCTTTCTATACCAT
BO04950.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twin-RF | 1659 | CG31137-PF | 1..1656 | 17..1672 | 8280 | 100 | Plus |
| twin-RC | 1704 | CG31137-PC | 46..1701 | 17..1672 | 8280 | 100 | Plus |
| twin-RE | 1659 | CG31137-PE | 1..1656 | 17..1672 | 8280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twin-RF | 2690 | CG31137-RF | 187..1842 | 17..1672 | 8280 | 100 | Plus |
| twin-RC | 2586 | CG31137-RC | 83..1738 | 17..1672 | 8280 | 100 | Plus |
| twin-RE | 3548 | CG31137-RE | 347..2002 | 17..1672 | 8280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24198439..24199213 | 1672..898 | 3875 | 100 | Minus |
| 3R | 32079331 | 3R | 24199273..24199587 | 899..585 | 1575 | 100 | Minus |
| 3R | 32079331 | 3R | 24219964..24220157 | 340..147 | 955 | 99.5 | Minus |
| 3R | 32079331 | 3R | 24219600..24219776 | 515..339 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 24220214..24220345 | 153..22 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 24199882..24199951 | 585..516 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:26:36 has no hits.
BO04950.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 08:53:31 Download gff for
BO04950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RC | 83..1738 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:43 Download gff for
BO04950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 347..2002 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:41 Download gff for
BO04950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 347..2002 | 17..1674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:41 Download gff for
BO04950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24198435..24199213 | 898..1674 | 99 | <- | Minus |
| 3R | 24199275..24199587 | 585..897 | 100 | <- | Minus |
| 3R | 24199883..24199951 | 516..584 | 100 | <- | Minus |
| 3R | 24219600..24219775 | 340..515 | 100 | <- | Minus |
| 3R | 24219965..24220151 | 153..339 | 100 | <- | Minus |
| 3R | 24220215..24220348 | 17..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:43 Download gff for
BO04950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20024157..20024935 | 898..1674 | 99 | <- | Minus |
| arm_3R | 20024997..20025309 | 585..897 | 100 | <- | Minus |
| arm_3R | 20025605..20025673 | 516..584 | 100 | <- | Minus |
| arm_3R | 20045322..20045497 | 340..515 | 100 | <- | Minus |
| arm_3R | 20045687..20045873 | 153..339 | 100 | <- | Minus |
| arm_3R | 20045937..20046070 | 17..152 | 97 | | Minus |
BO04950.3prime Sequence
916 bp (817 high quality bases) assembled on 2005-12-02
> BO04950.3prime
ATGGTATAGAAAGCTTGCCCGGCGATTGATCAGCCCGTTAGGAGGCGCCT
GTTGGCTAGCCGTATGCATCAGCTCTAGCTCGACCAGCAGTGGGAAGTGA
TCAGAGGGTATATGCGGATGTGGGCATCCAACAACCTTATTCTCGCGCAG
CCAATCATTGGAGACAGGACCCAGCAGGCCCAGCGGCACCATGCCCGTCT
TCGTGTAGAAAATGTAGTCGATGATGCCCTTAAAATCGAACGTATAGTTG
GTGTGCGGCATTATGTCCTCGTTGTAGGCGGAGGCTAGCTTGAACGAGTG
CGTAAACTCGTTGGTGTCGTTCGAGAGCAGCCGCTGCAGGCAGGACTTGT
AGCCCATGTCCTTGAAGTCCAAATGATCCATGGAAACGCGGCCCTTGCCG
AGAAACTCCACAACGCCTGAATCGGGTAGCGAGTTGAAGTCACCGCACAG
CAGCAGCTGGACAGCATTGGAGTCGTTCTTGTGACCAGGTCGGAAACTGT
GGCTCGCCTCGTCGATGATCGTCTTCAACTCATTGCTAAGCATCATCGTC
TGGATGAGCTTGACGTCGCAGAACTCAGGGTCCCAGTGTATGTGCGCCGT
GCAGACGAGCAGCGGCTGCGAGATCTGCGTCACCTCGGACATCGGCTCCC
ATGCGTTCTCCTTCACCTTGAGCAGTGCGGCCAGACCGATGTTATCCTTA
GGCATTACGCGGTTCAGCATGTTGTCGGAGCCCTCGGCATTGGCCATTGC
CAGCTGATTGAACTCGATCAATGATTCCTTGATCAGCGTAAACTTGGACG
CCCTGAAGAATATCGCACAGCCATCGACGTACTTCCTCTCCAGCTCGGAC
ATAGTCTTAGCACGCGACTTCGGTGAGAAGATTCCCTCGTACCCATCGTT
CTTTGAGTTCGGCAGG
BO04950.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31137-PA | 1659 | twin-RA | 772..1656 | 903..19 | 4425 | 100 | Minus |
| CG31137-PB | 1638 | twin-RB | 751..1635 | 903..19 | 4425 | 100 | Minus |
| CG31137-PE | 1659 | twin-RE | 772..1656 | 903..19 | 4425 | 100 | Minus |
| CG31137-PC | 1704 | twin-RC | 817..1701 | 903..19 | 4425 | 100 | Minus |
| CG31137-PD | 1077 | twin-RD | 190..1074 | 903..19 | 4425 | 100 | Minus |
| CG31137-PF | 1659 | twin-RF | 772..1656 | 903..19 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:44:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twin-RF | 2690 | CG31137-RF | 945..1842 | 916..19 | 4445 | 99.8 | Minus |
| twin-RD | 2950 | CG31137-RD | 1205..2102 | 916..19 | 4445 | 99.8 | Minus |
| twin-RC | 2586 | CG31137-RC | 841..1738 | 916..19 | 4445 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:44:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24198439..24199213 | 19..793 | 3875 | 100 | Plus |
| 3R | 32079331 | 3R | 24199273..24199384 | 792..903 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:44:11 has no hits.
BO04950.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:39 Download gff for
BO04950.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-PF | 759..1659 | 18..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:31:40 Download gff for
BO04950.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31137-PF | 759..1659 | 18..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:35:05 Download gff for
BO04950.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RC | 841..1744 | 15..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:21 Download gff for
BO04950.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RC | 841..1744 | 15..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:21 Download gff for
BO04950.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24198433..24199213 | 15..793 | 99 | <- | Plus |
| 3R | 24199275..24199397 | 794..916 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:35:05 Download gff for
BO04950.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20024155..20024935 | 15..793 | 99 | <- | Plus |
| arm_3R | 20024997..20025119 | 794..916 | 98 | | Plus |
BO04950.5prime Sequence
926 bp (788 high quality bases) assembled on 2005-12-02
> BO04950.5prime
GAAGTTATCAGTCGACATGAAAGGCAATCATTATAAAATGTCTCGTAACA
AAGACAAATACGACAGCGCCAATCGGCGGCAGCAGATCTTTCTGTCGCAG
GAGGACATAGCTGCGGGCAAGAAGACGAACTGGAGTGGCCTAGAGATTAC
TGGCTGCGTCCGCAATATCAGCCCGTCGCTGTGGGAATTTGAGCATCTAA
CCGCCCTCTACCTGAACGACAACCAGCTGCTGCGATTGCCCGCAGACGTT
GGCATGCTGACCAGCCTCCGAACTTTGGACCTGTCCAGCAATAAGCTAAG
AAGTCTTCCCGCAGAGCTCGGCGAGCTCATCCAGTTGCGGGAGCTGTTGC
TGAACAACAACTTTCTGCGCGTACTGCCTTACGAGATCGGCAAGCTGTTC
CACCTCGTCATACTCGGCCTCATGGGCAATCCGCTGCAAAAGGAGTTCAT
GAACATCTACAACGAACCGAACGGCACGCAGAAACTGCTCACCTACATGC
TGGACAACTTGTCATTTACCGTGAATCCACCGCCCCAGAGGCCCTGGCTG
CCACTGGCCAAGCCCAACAAAACGCGACCAGCCTGCATTTTTACGGTCAT
GTGCTATAATGTGCTCTGCGACAAGTACGCGACGCGACAAATGTACGGAT
ACTGTCCGTCGTGGGCGCTATGCTGGGAGTACCGAAAAAAGTCGATTATC
GACGAGATACGGCACTATGCAGCGGACATTATCAGTCTGCAGGAGATCGA
AACGGAGCAATTCTATCACTTCTTCCTGCCGGAACTCAAGAACGATGGGT
ACGAGGGAATCTTCTCACCGAAGTCGCGTGCTAAGACTATGTCCGAGCTG
GAGAGAAAGTACGTCGATGGCTGTGCGATATTCTTCAGGGCGTCCAAGTT
TACGCTGATCAAGGAATCATTGATCG
BO04950.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31137-PA | 1659 | twin-RA | 1..910 | 17..926 | 4525 | 99.8 | Plus |
| CG31137-PE | 1659 | twin-RE | 1..910 | 17..926 | 4525 | 99.8 | Plus |
| CG31137-PC | 1704 | twin-RC | 46..955 | 17..926 | 4525 | 99.8 | Plus |
| CG31137-PF | 1659 | twin-RF | 1..910 | 17..926 | 4525 | 99.8 | Plus |
| CG31137-PB | 1638 | twin-RB | 1..889 | 38..926 | 4420 | 99.8 | Plus |
| CG31137-PD | 1077 | twin-RD | 1..328 | 599..926 | 1615 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twin-RF | 2690 | CG31137-RF | 187..1096 | 17..926 | 4535 | 99.9 | Plus |
| twin-RC | 2586 | CG31137-RC | 83..992 | 17..926 | 4535 | 99.9 | Plus |
| twin-RE | 3548 | CG31137-RE | 347..1256 | 17..926 | 4535 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24199273..24199587 | 899..585 | 1560 | 99.7 | Minus |
| 3R | 32079331 | 3R | 24219964..24220157 | 340..147 | 955 | 99.5 | Minus |
| 3R | 32079331 | 3R | 24219600..24219776 | 515..339 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 24220214..24220345 | 153..22 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 24199882..24199951 | 585..516 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:14:23 has no hits.
BO04950.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:40 Download gff for
BO04950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-PF | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:31:42 Download gff for
BO04950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31137-PF | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:50 Download gff for
BO04950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 341..1256 | 11..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:16:20 Download gff for
BO04950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 341..1256 | 11..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:16:20 Download gff for
BO04950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24199185..24199213 | 898..926 | 100 | <- | Minus |
| 3R | 24199275..24199587 | 585..897 | 99 | <- | Minus |
| 3R | 24199883..24199951 | 516..584 | 100 | <- | Minus |
| 3R | 24219600..24219775 | 340..515 | 100 | <- | Minus |
| 3R | 24219965..24220151 | 153..339 | 100 | <- | Minus |
| 3R | 24220215..24220352 | 15..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:50 Download gff for
BO04950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20024907..20024935 | 898..926 | 100 | <- | Minus |
| arm_3R | 20024997..20025309 | 585..897 | 99 | <- | Minus |
| arm_3R | 20025605..20025673 | 516..584 | 100 | <- | Minus |
| arm_3R | 20045322..20045497 | 340..515 | 100 | <- | Minus |
| arm_3R | 20045687..20045873 | 153..339 | 100 | <- | Minus |
| arm_3R | 20045937..20046074 | 15..152 | 97 | | Minus |
BO04950.pep Sequence
Translation from 16 to 1690
> BO04950.pep
MKGNHYKMSRNKDKYDSANRRQQIFLSQEDIAAGKKTNWSGLEITGCVRN
ISPSLWEFEHLTALYLNDNQLLRLPADVGMLTSLRTLDLSSNKLRSLPAE
LGELIQLRELLLNNNFLRVLPYEIGKLFHLVILGLMGNPLQKEFMNIYNE
PNGTQKLLTYMLDNLSFTVNPPPQRPWLPLAKPNKTRPACIFTVMCYNVL
CDKYATRQMYGYCPSWALCWEYRKKSIIDEIRHYAADIISLQEIETEQFY
HFFLPELKNDGYEGIFSPKSRAKTMSELERKYVDGCAIFFRASKFTLIKE
SLIEFNQLAMANAEGSDNMLNRVMPKDNIGLAALLKVKENAWEPMSEVTQ
ISQPLLVCTAHIHWDPEFCDVKLIQTMMLSNELKTIIDEASHSFRPGHKN
DSNAVQLLLCGDFNSLPDSGVVEFLGKGRVSMDHLDFKDMGYKSCLQRLL
SNDTNEFTHSFKLASAYNEDIMPHTNYTFDFKGIIDYIFYTKTGMVPLGL
LGPVSNDWLRENKVVGCPHPHIPSDHFPLLVELELMHTASQQAPPNGLIN
RRASFLYH
BO04950.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twin-PF | 552 | CG31137-PF | 1..552 | 1..552 | 2939 | 100 | Plus |
| twin-PC | 567 | CG31137-PC | 16..567 | 1..552 | 2939 | 100 | Plus |
| twin-PE | 552 | CG31137-PE | 1..552 | 1..552 | 2939 | 100 | Plus |
| twin-PA | 552 | CG31137-PA | 1..552 | 1..552 | 2939 | 100 | Plus |
| twin-PB | 545 | CG31137-PB | 1..545 | 8..552 | 2897 | 100 | Plus |
