Clone BO04957 Report

Search the DGRC for BO04957

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:49
Well:57
Vector:pDNR-Dual
Associated Gene/Transcripten-RA
Protein status:BO04957.pep: full length peptide match
Sequenced Size:1690

Clone Sequence Records

BO04957.3prime Sequence

955 bp (788 high quality bases) assembled on 2005-12-02

> BO04957.3prime
ATGGTCTAGAAAGCTTGCGGGGATCTGCCCGTTCATGCGCATCTCGAGCT
CCTCCTCCTCCTTGGTCAGCGGCACGGTGGTGTGGTTGTACAATCCCTGG
GCCATCAGCTGCAGTGCCAGCGGATTTTTGGAGCCCGTCGACTTCTTGAT
CTTGGCCCGCTTGTTCTGGAACCAGATCTTGATCTGCGCCTCGTTCAGGC
CCAACTCGCTGCTCAGCTGCTGGCGTCTCCGCTCGGTCAGATAGCGATTC
TCGTTGAACTCCCGCTTAAGGCGGGCCAACTGCTCGCTGGAGAACGCGGT
GCGTGGACGCTTCTCGTCGTTGGTCTTGTCCTTTGGCTGTTTGGGGCGGC
GGTAGCGGGGTCCTGAGCTGGGACGATCGCTGTAGCGGGTGCAGTACACC
CAGGCGGGCCACATCTCGTTCTTGCCGCCCTCTGTGGTGGTGGATCCCGT
CTCGGAACGCGTGTCATCCGAGGACTCCATTCCGGAATCTCGGCTAACGG
CGGATGGCGGCGGGATTGGCTGCGGCTGGGGACTGCTGGCATTGACTCCG
GATCCACTGGCTCCCAGTCGGCTACTGGGCGAGGAGTTCAAGGAACTGGC
CGCCGAGGAGCAACCCGACGAGGAGGAGCTCGAGCTGGTGGCCACGGAAG
AGGTGCTGCTAATGGTCGAGGCATTGGAGGCGGGTGGCGGACTGGCCAAG
CTGCTGGCACTGCTACTCAGCGGAGGTTGGGTCATCGTAGGGGCAGCAGG
TTGTCCGATCTGCGAGACCGCCTTGCACAGGGATCCCAGAGCAGATTTCT
CTGGATTGGCATCGCTCATCTTGGAGCTCATGGGCGGCGGGATGACGGCA
TTGGCTGCACTCCTGCGCAGCCGACTCTGCACGATTTCCTCGTGTATCCT
GGGATAGGCAGCCGGGATGAAACAGTTAAGGAAGTTGGCCCGTTCCAGCA
TCATG

BO04957.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9015-PB 1659 en-RB 720..1656 955..19 4610 99.6 Minus
CG9015-PA 1659 en-RA 720..1656 955..19 4610 99.6 Minus
CG17835-PD 1731 inv-RD 1528..1575 198..151 215 97.9 Minus
CG17835-PC 1731 inv-RC 1528..1575 198..151 215 97.9 Minus
CG17835-PA 1731 inv-RA 1528..1575 198..151 215 97.9 Minus
CG17835-PB 1731 inv-RB 1528..1575 198..151 215 97.9 Minus
CG17835-PD 1731 inv-RD 1255..1295 402..362 180 97.5 Minus
CG17835-PC 1731 inv-RC 1255..1295 402..362 180 97.5 Minus
CG17835-PA 1731 inv-RA 1255..1295 402..362 180 97.5 Minus
CG17835-PB 1731 inv-RB 1255..1295 402..362 180 97.5 Minus
CG17835-PD 1731 inv-RD 1600..1644 126..82 175 95.5 Minus
CG17835-PC 1731 inv-RC 1600..1644 126..82 175 95.5 Minus
CG17835-PA 1731 inv-RA 1600..1644 126..82 175 95.5 Minus
CG17835-PB 1731 inv-RB 1600..1644 126..82 175 95.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
en-RA 2465 CG9015-RA 933..1869 955..19 4640 99.7 Minus
en-RB 2792 CG9015-RB 1260..2196 955..19 4640 99.7 Minus
inv-RE 4776 CG17835-RE 1711..1947 283..47 705 86.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11526358..11526951 362..955 2925 99.5 Plus
2R 25286936 2R 11524602..11524849 19..266 1240 100 Plus
2R 25286936 2R 11506652..11506866 261..47 670 87.4 Minus
2R 25286936 2R 11525128..11525228 265..365 505 100 Plus
2R 25286936 2R 11477221..11477270 411..362 205 94 Minus
Blast to na_te.dros performed on 2015-02-13 02:15:29 has no hits.

BO04957.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:50 Download gff for BO04957.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9015-PB 720..1659 15..955 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:31:56 Download gff for BO04957.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9015-PA 720..1659 15..955 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:38 Download gff for BO04957.3prime
Subject Subject Range Query Range Percent Splice Strand
en-RB 1260..2201 13..955 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:33:46 Download gff for BO04957.3prime
Subject Subject Range Query Range Percent Splice Strand
en-RB 1260..2201 13..955 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:33:46 Download gff for BO04957.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11524597..11524847 13..264 99 <- Plus
2R 11525128..11525225 265..362 100 <- Plus
2R 11526359..11526951 363..955 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:38 Download gff for BO04957.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7412102..7412352 13..264 99 <- Plus
arm_2R 7412633..7412730 265..362 100 <- Plus
arm_2R 7413864..7414456 363..955 99   Plus

BO04957.5prime Sequence

769 bp (768 high quality bases) assembled on 2005-12-02

> BO04957.5prime
GAAGTTATCAGTCGACATGGCCCTGGAGGATCGCTGCAGTCCACAGTCAG
CGCCCAGCCCCATTACCCTACAAATGCAGCATCTTCACCACCAGCAACAG
CAGCAGCAGCAACAGCAGCAGCAAATGCAGCACCTCCACCAGCTGCAGCA
ACTGCAGCAGTTGCACCAACAGCAACTGGCCGCCGGTGTCTTCCACCATC
CGGCAATGGCCTTCGATGCCGCTGCAGCCGCCGCTGCTGCAGCTGCTGCT
GCGGCCGCCCACGCTCATGCTGCTGCACTGCAGCAGCGCCTCAGTGGCAG
TGGATCGCCCGCATCCTGCTCCACGCCCGCCTCGTCCACGCCGCTGACCA
TCAAGGAGGAGGAAAGCGACTCCGTGATCGGTGACATGAGTTTCCACAAT
CAGACGCACACCACCAACGAGGAGGAGGAGGCGGAGGAGGATGACGACAT
TGATGTGGATGTGGATGATACGTCGGCGGGCGGACGCCTGCCACCACCCG
CCCACCAGCAGCAGTCGACGGCCAAGCCCTCGCTGGCCTTTTCCATCTCC
AACATCCTGAGCGATCGTTTCGGAGATGTCCAGAAGCCGGGCAAGTCGAT
GGAGAACCAGGCCAGCATATTCCGCCCCTTCGAGGCGAGTCGTTCCCAGA
CTGCCACGCCCTCCGCCTTTACAAGAGTGGATCTGCTGGAGTTTAGCCGG
CAACAGCAGGCTGCCGCCGCAGCCGCTACTGCGGCCATGATGCTGGAACG
GGCCAACTTCCTTAACTGC

BO04957.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9015-PB 1659 en-RB 1..753 17..769 3765 100 Plus
CG9015-PA 1659 en-RA 1..753 17..769 3765 100 Plus
CG5460-PB 3180 H-RB 2758..2784 227..253 135 100 Plus
CG5460-PC 3180 H-RC 2758..2784 227..253 135 100 Plus
CG5460-PA 3234 H-RA 2812..2838 227..253 135 100 Plus
CG5460-PD 3234 H-RD 2812..2838 227..253 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
en-RA 2465 CG9015-RA 214..966 17..769 3765 100 Plus
en-RB 2792 CG9015-RB 541..1293 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11526918..11527670 769..17 3765 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:15:52 has no hits.

BO04957.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:51 Download gff for BO04957.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9015-PB 1..753 17..769 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:31:58 Download gff for BO04957.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9015-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:41 Download gff for BO04957.5prime
Subject Subject Range Query Range Percent Splice Strand
en-RB 541..1293 17..769 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:35:12 Download gff for BO04957.5prime
Subject Subject Range Query Range Percent Splice Strand
en-RB 541..1293 17..769 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:35:12 Download gff for BO04957.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11526918..11527670 17..769 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:41 Download gff for BO04957.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7414423..7415175 17..769 100   Minus

BO04957.complete Sequence

1690 bp (1690 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ629930

> BO04957.complete
GAAGTTATCAGTCGACATGGCCCTGGAGGATCGCTGCAGTCCACAGTCAG
CGCCCAGCCCCATTACCCTACAAATGCAGCATCTTCACCACCAGCAACAG
CAGCAGCAGCAACAGCAGCAGCAAATGCAGCACCTCCACCAGCTGCAGCA
ACTGCAGCAGTTGCACCAACAGCAACTGGCCGCCGGTGTCTTCCACCATC
CGGCAATGGCCTTCGATGCCGCTGCAGCCGCCGCTGCTGCAGCTGCTGCT
GCGGCCGCCCACGCTCATGCTGCTGCACTGCAGCAGCGCCTCAGTGGCAG
TGGATCGCCCGCATCCTGCTCCACGCCCGCCTCGTCCACGCCGCTGACCA
TCAAGGAGGAGGAAAGCGACTCCGTGATCGGTGACATGAGTTTCCACAAT
CAGACGCACACCACCAACGAGGAGGAGGAGGCGGAGGAGGATGACGACAT
TGATGTGGATGTGGATGATACGTCGGCGGGCGGACGCCTGCCACCACCCG
CCCACCAGCAGCAGTCGACGGCCAAGCCCTCGCTGGCCTTTTCCATCTCC
AACATCCTGAGCGATCGTTTCGGAGATGTCCAGAAGCCGGGCAAGTCGAT
GGAGAACCAGGCCAGCATATTCCGCCCCTTCGAGGCGAGTCGTTCCCAGA
CTGCCACGCCCTCCGCCTTTACAAGAGTGGATCTGCTGGAGTTTAGCCGG
CAACAGCAGGCTGCCGCCGCAGCCGCTACTGCGGCCATGATGCTGGAACG
GGCCAACTTCCTTAACTGCTTCAATCCGGCTGCCTATCCCAGGATACACG
AGGAAATCGTGCAGAGTCGGCTGCGCAGGAGTGCAGCCAATGCCGTCATC
CCGCCGCCCATGAGCTCCAAGATGAGCGATGCCAATCCAGAGAAATCTGC
TCTGGGATCCCTGTGCAAGGCGGTCTCGCAGATCGGACAACCTGCTGCCC
CTACGATGACCCAACCTCCGCTGAGTAGCAGTGCCAGCAGCTTGGCCAGT
CCGCCACCCGCCTCCAATGCCTCGACCATTAGCAGCACCTCTTCCGTGGC
CACCAGCTCGAGCTCCTCCTCGTCGGGTTGCTCCTCGGCGGCCAGTTCCT
TGAACTCCTCGCCCAGTAGCCGACTGGGAGCCAGTGGATCCGGAGTCAAT
GCCAGCAGTCCCCAGCCGCAGCCAATCCCGCCGCCATCCGCCGTTAGCCG
AGATTCCGGAATGGAGTCCTCGGATGACACGCGTTCCGAGACGGGATCCA
CCACCACAGAGGGCGGCAAGAACGAGATGTGGCCCGCCTGGGTGTACTGC
ACCCGCTACAGCGATCGTCCCAGCTCAGGACCCCGCTACCGCCGCCCCAA
ACAGCCAAAGGACAAGACCAACGACGAGAAGCGTCCACGCACCGCGTTCT
CCAGCGAGCAGTTGGCCCGCCTTAAGCGGGAGTTCAACGAGAATCGCTAT
CTGACCGAGCGGAGACGCCAGCAGCTGAGCAGCGAGTTGGGCCTGAACGA
GGCGCAGATCAAGATCTGGTTCCAGAACAAGCGGGCCAAGATCAAGAAGT
CGACGGGCTCCAAAAATCCGCTGGCACTGCAGCTGATGGCCCAGGGATTG
TACAACCACACCACCGTGCCGCTGACCAAGGAGGAGGAGGAGCTCGAGAT
GCGCATGAACGGGCAGATCCCCGCAAGCTTTCTAGACCAT

BO04957.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
en-RA 1659 CG9015-PA 1..1656 17..1672 8280 100 Plus
en-RB 1659 CG9015-PB 1..1656 17..1672 8280 100 Plus
inv-RE 1731 CG17835-PE 1443..1679 1408..1644 705 86.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
en-RA 2465 CG9015-RA 214..1869 17..1672 8280 100 Plus
en-RB 2792 CG9015-RB 541..2196 17..1672 8280 100 Plus
inv-RE 4776 CG17835-RE 1711..1947 1408..1644 705 86.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11526358..11527670 1329..17 6565 100 Minus
2R 25286936 2R 11524602..11524849 1672..1425 1240 100 Minus
2R 25286936 2R 11506652..11506866 1430..1644 670 87.4 Plus
2R 25286936 2R 11525128..11525228 1426..1326 505 100 Minus
2R 25286936 2R 11477221..11477270 1280..1329 205 94 Plus
Blast to na_te.dros performed on 2014-11-27 16:20:55 has no hits.

BO04957.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:54 Download gff for BO04957.complete
Subject Subject Range Query Range Percent Splice Strand
en-RA 1..1659 17..1676 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:12 Download gff for BO04957.complete
Subject Subject Range Query Range Percent Splice Strand
en-RA 214..1874 17..1678 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:41 Download gff for BO04957.complete
Subject Subject Range Query Range Percent Splice Strand
en-RB 541..2196 17..1674 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:54 Download gff for BO04957.complete
Subject Subject Range Query Range Percent Splice Strand
en-RA 214..1874 17..1678 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:30 Download gff for BO04957.complete
Subject Subject Range Query Range Percent Splice Strand
en-RB 541..2196 17..1674 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:30 Download gff for BO04957.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11524600..11524847 1427..1674 99 <- Minus
2R 11525128..11525225 1329..1426 100 <- Minus
2R 11526359..11527670 17..1328 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:41 Download gff for BO04957.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7412105..7412352 1427..1674 99 <- Minus
arm_2R 7412633..7412730 1329..1426 100 <- Minus
arm_2R 7413864..7415175 17..1328 100   Minus

BO04957.pep Sequence

Translation from 16 to 1690

> BO04957.pep
MALEDRCSPQSAPSPITLQMQHLHHQQQQQQQQQQQMQHLHQLQQLQQLH
QQQLAAGVFHHPAMAFDAAAAAAAAAAAAAAHAHAAALQQRLSGSGSPAS
CSTPASSTPLTIKEEESDSVIGDMSFHNQTHTTNEEEEAEEDDDIDVDVD
DTSAGGRLPPPAHQQQSTAKPSLAFSISNILSDRFGDVQKPGKSMENQAS
IFRPFEASRSQTATPSAFTRVDLLEFSRQQQAAAAAATAAMMLERANFLN
CFNPAAYPRIHEEIVQSRLRRSAANAVIPPPMSSKMSDANPEKSALGSLC
KAVSQIGQPAAPTMTQPPLSSSASSLASPPPASNASTISSTSSVATSSSS
SSSGCSSAASSLNSSPSSRLGASGSGVNASSPQPQPIPPPSAVSRDSGME
SSDDTRSETGSTTTEGGKNEMWPAWVYCTRYSDRPSSGPRYRRPKQPKDK
TNDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKI
WFQNKRAKIKKSTGSKNPLALQLMAQGLYNHTTVPLTKEEEELEMRMNGQ
IPASFLDH

BO04957.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
en-PA 552 CG9015-PA 1..552 1..552 2805 100 Plus
en-PB 552 CG9015-PB 1..552 1..552 2805 100 Plus
inv-PE 576 CG17835-PE 294..561 291..544 576 45.8 Plus
inv-PB 576 CG17835-PB 294..561 291..544 576 45.8 Plus
inv-PD 576 CG17835-PD 294..561 291..544 576 45.8 Plus