Clone Sequence Records
BO04957.3prime Sequence
955 bp (788 high quality bases) assembled on 2005-12-02
> BO04957.3prime
ATGGTCTAGAAAGCTTGCGGGGATCTGCCCGTTCATGCGCATCTCGAGCT
CCTCCTCCTCCTTGGTCAGCGGCACGGTGGTGTGGTTGTACAATCCCTGG
GCCATCAGCTGCAGTGCCAGCGGATTTTTGGAGCCCGTCGACTTCTTGAT
CTTGGCCCGCTTGTTCTGGAACCAGATCTTGATCTGCGCCTCGTTCAGGC
CCAACTCGCTGCTCAGCTGCTGGCGTCTCCGCTCGGTCAGATAGCGATTC
TCGTTGAACTCCCGCTTAAGGCGGGCCAACTGCTCGCTGGAGAACGCGGT
GCGTGGACGCTTCTCGTCGTTGGTCTTGTCCTTTGGCTGTTTGGGGCGGC
GGTAGCGGGGTCCTGAGCTGGGACGATCGCTGTAGCGGGTGCAGTACACC
CAGGCGGGCCACATCTCGTTCTTGCCGCCCTCTGTGGTGGTGGATCCCGT
CTCGGAACGCGTGTCATCCGAGGACTCCATTCCGGAATCTCGGCTAACGG
CGGATGGCGGCGGGATTGGCTGCGGCTGGGGACTGCTGGCATTGACTCCG
GATCCACTGGCTCCCAGTCGGCTACTGGGCGAGGAGTTCAAGGAACTGGC
CGCCGAGGAGCAACCCGACGAGGAGGAGCTCGAGCTGGTGGCCACGGAAG
AGGTGCTGCTAATGGTCGAGGCATTGGAGGCGGGTGGCGGACTGGCCAAG
CTGCTGGCACTGCTACTCAGCGGAGGTTGGGTCATCGTAGGGGCAGCAGG
TTGTCCGATCTGCGAGACCGCCTTGCACAGGGATCCCAGAGCAGATTTCT
CTGGATTGGCATCGCTCATCTTGGAGCTCATGGGCGGCGGGATGACGGCA
TTGGCTGCACTCCTGCGCAGCCGACTCTGCACGATTTCCTCGTGTATCCT
GGGATAGGCAGCCGGGATGAAACAGTTAAGGAAGTTGGCCCGTTCCAGCA
TCATG
BO04957.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9015-PB | 1659 | en-RB | 720..1656 | 955..19 | 4610 | 99.6 | Minus |
CG9015-PA | 1659 | en-RA | 720..1656 | 955..19 | 4610 | 99.6 | Minus |
CG17835-PD | 1731 | inv-RD | 1528..1575 | 198..151 | 215 | 97.9 | Minus |
CG17835-PC | 1731 | inv-RC | 1528..1575 | 198..151 | 215 | 97.9 | Minus |
CG17835-PA | 1731 | inv-RA | 1528..1575 | 198..151 | 215 | 97.9 | Minus |
CG17835-PB | 1731 | inv-RB | 1528..1575 | 198..151 | 215 | 97.9 | Minus |
CG17835-PD | 1731 | inv-RD | 1255..1295 | 402..362 | 180 | 97.5 | Minus |
CG17835-PC | 1731 | inv-RC | 1255..1295 | 402..362 | 180 | 97.5 | Minus |
CG17835-PA | 1731 | inv-RA | 1255..1295 | 402..362 | 180 | 97.5 | Minus |
CG17835-PB | 1731 | inv-RB | 1255..1295 | 402..362 | 180 | 97.5 | Minus |
CG17835-PD | 1731 | inv-RD | 1600..1644 | 126..82 | 175 | 95.5 | Minus |
CG17835-PC | 1731 | inv-RC | 1600..1644 | 126..82 | 175 | 95.5 | Minus |
CG17835-PA | 1731 | inv-RA | 1600..1644 | 126..82 | 175 | 95.5 | Minus |
CG17835-PB | 1731 | inv-RB | 1600..1644 | 126..82 | 175 | 95.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
en-RA | 2465 | CG9015-RA | 933..1869 | 955..19 | 4640 | 99.7 | Minus |
en-RB | 2792 | CG9015-RB | 1260..2196 | 955..19 | 4640 | 99.7 | Minus |
inv-RE | 4776 | CG17835-RE | 1711..1947 | 283..47 | 705 | 86.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:15:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11526358..11526951 | 362..955 | 2925 | 99.5 | Plus |
2R | 25286936 | 2R | 11524602..11524849 | 19..266 | 1240 | 100 | Plus |
2R | 25286936 | 2R | 11506652..11506866 | 261..47 | 670 | 87.4 | Minus |
2R | 25286936 | 2R | 11525128..11525228 | 265..365 | 505 | 100 | Plus |
2R | 25286936 | 2R | 11477221..11477270 | 411..362 | 205 | 94 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:15:29 has no hits.
BO04957.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:50 Download gff for
BO04957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9015-PB | 720..1659 | 15..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:31:56 Download gff for
BO04957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9015-PA | 720..1659 | 15..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:38 Download gff for
BO04957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
en-RB | 1260..2201 | 13..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:33:46 Download gff for
BO04957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
en-RB | 1260..2201 | 13..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:33:46 Download gff for
BO04957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11524597..11524847 | 13..264 | 99 | <- | Plus |
2R | 11525128..11525225 | 265..362 | 100 | <- | Plus |
2R | 11526359..11526951 | 363..955 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:38 Download gff for
BO04957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7412102..7412352 | 13..264 | 99 | <- | Plus |
arm_2R | 7412633..7412730 | 265..362 | 100 | <- | Plus |
arm_2R | 7413864..7414456 | 363..955 | 99 | | Plus |
BO04957.5prime Sequence
769 bp (768 high quality bases) assembled on 2005-12-02
> BO04957.5prime
GAAGTTATCAGTCGACATGGCCCTGGAGGATCGCTGCAGTCCACAGTCAG
CGCCCAGCCCCATTACCCTACAAATGCAGCATCTTCACCACCAGCAACAG
CAGCAGCAGCAACAGCAGCAGCAAATGCAGCACCTCCACCAGCTGCAGCA
ACTGCAGCAGTTGCACCAACAGCAACTGGCCGCCGGTGTCTTCCACCATC
CGGCAATGGCCTTCGATGCCGCTGCAGCCGCCGCTGCTGCAGCTGCTGCT
GCGGCCGCCCACGCTCATGCTGCTGCACTGCAGCAGCGCCTCAGTGGCAG
TGGATCGCCCGCATCCTGCTCCACGCCCGCCTCGTCCACGCCGCTGACCA
TCAAGGAGGAGGAAAGCGACTCCGTGATCGGTGACATGAGTTTCCACAAT
CAGACGCACACCACCAACGAGGAGGAGGAGGCGGAGGAGGATGACGACAT
TGATGTGGATGTGGATGATACGTCGGCGGGCGGACGCCTGCCACCACCCG
CCCACCAGCAGCAGTCGACGGCCAAGCCCTCGCTGGCCTTTTCCATCTCC
AACATCCTGAGCGATCGTTTCGGAGATGTCCAGAAGCCGGGCAAGTCGAT
GGAGAACCAGGCCAGCATATTCCGCCCCTTCGAGGCGAGTCGTTCCCAGA
CTGCCACGCCCTCCGCCTTTACAAGAGTGGATCTGCTGGAGTTTAGCCGG
CAACAGCAGGCTGCCGCCGCAGCCGCTACTGCGGCCATGATGCTGGAACG
GGCCAACTTCCTTAACTGC
BO04957.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9015-PB | 1659 | en-RB | 1..753 | 17..769 | 3765 | 100 | Plus |
CG9015-PA | 1659 | en-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
CG5460-PB | 3180 | H-RB | 2758..2784 | 227..253 | 135 | 100 | Plus |
CG5460-PC | 3180 | H-RC | 2758..2784 | 227..253 | 135 | 100 | Plus |
CG5460-PA | 3234 | H-RA | 2812..2838 | 227..253 | 135 | 100 | Plus |
CG5460-PD | 3234 | H-RD | 2812..2838 | 227..253 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:15:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
en-RA | 2465 | CG9015-RA | 214..966 | 17..769 | 3765 | 100 | Plus |
en-RB | 2792 | CG9015-RB | 541..1293 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11526918..11527670 | 769..17 | 3765 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:15:52 has no hits.
BO04957.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:51 Download gff for
BO04957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9015-PB | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:31:58 Download gff for
BO04957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9015-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:41 Download gff for
BO04957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
en-RB | 541..1293 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:35:12 Download gff for
BO04957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
en-RB | 541..1293 | 17..769 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:35:12 Download gff for
BO04957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11526918..11527670 | 17..769 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:41 Download gff for
BO04957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7414423..7415175 | 17..769 | 100 | | Minus |
BO04957.complete Sequence
1690 bp (1690 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629930
> BO04957.complete
GAAGTTATCAGTCGACATGGCCCTGGAGGATCGCTGCAGTCCACAGTCAG
CGCCCAGCCCCATTACCCTACAAATGCAGCATCTTCACCACCAGCAACAG
CAGCAGCAGCAACAGCAGCAGCAAATGCAGCACCTCCACCAGCTGCAGCA
ACTGCAGCAGTTGCACCAACAGCAACTGGCCGCCGGTGTCTTCCACCATC
CGGCAATGGCCTTCGATGCCGCTGCAGCCGCCGCTGCTGCAGCTGCTGCT
GCGGCCGCCCACGCTCATGCTGCTGCACTGCAGCAGCGCCTCAGTGGCAG
TGGATCGCCCGCATCCTGCTCCACGCCCGCCTCGTCCACGCCGCTGACCA
TCAAGGAGGAGGAAAGCGACTCCGTGATCGGTGACATGAGTTTCCACAAT
CAGACGCACACCACCAACGAGGAGGAGGAGGCGGAGGAGGATGACGACAT
TGATGTGGATGTGGATGATACGTCGGCGGGCGGACGCCTGCCACCACCCG
CCCACCAGCAGCAGTCGACGGCCAAGCCCTCGCTGGCCTTTTCCATCTCC
AACATCCTGAGCGATCGTTTCGGAGATGTCCAGAAGCCGGGCAAGTCGAT
GGAGAACCAGGCCAGCATATTCCGCCCCTTCGAGGCGAGTCGTTCCCAGA
CTGCCACGCCCTCCGCCTTTACAAGAGTGGATCTGCTGGAGTTTAGCCGG
CAACAGCAGGCTGCCGCCGCAGCCGCTACTGCGGCCATGATGCTGGAACG
GGCCAACTTCCTTAACTGCTTCAATCCGGCTGCCTATCCCAGGATACACG
AGGAAATCGTGCAGAGTCGGCTGCGCAGGAGTGCAGCCAATGCCGTCATC
CCGCCGCCCATGAGCTCCAAGATGAGCGATGCCAATCCAGAGAAATCTGC
TCTGGGATCCCTGTGCAAGGCGGTCTCGCAGATCGGACAACCTGCTGCCC
CTACGATGACCCAACCTCCGCTGAGTAGCAGTGCCAGCAGCTTGGCCAGT
CCGCCACCCGCCTCCAATGCCTCGACCATTAGCAGCACCTCTTCCGTGGC
CACCAGCTCGAGCTCCTCCTCGTCGGGTTGCTCCTCGGCGGCCAGTTCCT
TGAACTCCTCGCCCAGTAGCCGACTGGGAGCCAGTGGATCCGGAGTCAAT
GCCAGCAGTCCCCAGCCGCAGCCAATCCCGCCGCCATCCGCCGTTAGCCG
AGATTCCGGAATGGAGTCCTCGGATGACACGCGTTCCGAGACGGGATCCA
CCACCACAGAGGGCGGCAAGAACGAGATGTGGCCCGCCTGGGTGTACTGC
ACCCGCTACAGCGATCGTCCCAGCTCAGGACCCCGCTACCGCCGCCCCAA
ACAGCCAAAGGACAAGACCAACGACGAGAAGCGTCCACGCACCGCGTTCT
CCAGCGAGCAGTTGGCCCGCCTTAAGCGGGAGTTCAACGAGAATCGCTAT
CTGACCGAGCGGAGACGCCAGCAGCTGAGCAGCGAGTTGGGCCTGAACGA
GGCGCAGATCAAGATCTGGTTCCAGAACAAGCGGGCCAAGATCAAGAAGT
CGACGGGCTCCAAAAATCCGCTGGCACTGCAGCTGATGGCCCAGGGATTG
TACAACCACACCACCGTGCCGCTGACCAAGGAGGAGGAGGAGCTCGAGAT
GCGCATGAACGGGCAGATCCCCGCAAGCTTTCTAGACCAT
BO04957.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
en-RA | 1659 | CG9015-PA | 1..1656 | 17..1672 | 8280 | 100 | Plus |
en-RB | 1659 | CG9015-PB | 1..1656 | 17..1672 | 8280 | 100 | Plus |
inv-RE | 1731 | CG17835-PE | 1443..1679 | 1408..1644 | 705 | 86.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
en-RA | 2465 | CG9015-RA | 214..1869 | 17..1672 | 8280 | 100 | Plus |
en-RB | 2792 | CG9015-RB | 541..2196 | 17..1672 | 8280 | 100 | Plus |
inv-RE | 4776 | CG17835-RE | 1711..1947 | 1408..1644 | 705 | 86.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11526358..11527670 | 1329..17 | 6565 | 100 | Minus |
2R | 25286936 | 2R | 11524602..11524849 | 1672..1425 | 1240 | 100 | Minus |
2R | 25286936 | 2R | 11506652..11506866 | 1430..1644 | 670 | 87.4 | Plus |
2R | 25286936 | 2R | 11525128..11525228 | 1426..1326 | 505 | 100 | Minus |
2R | 25286936 | 2R | 11477221..11477270 | 1280..1329 | 205 | 94 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:20:55 has no hits.
BO04957.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:54 Download gff for
BO04957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
en-RA | 1..1659 | 17..1676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:12 Download gff for
BO04957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
en-RA | 214..1874 | 17..1678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:41 Download gff for
BO04957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
en-RB | 541..2196 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:54 Download gff for
BO04957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
en-RA | 214..1874 | 17..1678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:30 Download gff for
BO04957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
en-RB | 541..2196 | 17..1674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:30 Download gff for
BO04957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11524600..11524847 | 1427..1674 | 99 | <- | Minus |
2R | 11525128..11525225 | 1329..1426 | 100 | <- | Minus |
2R | 11526359..11527670 | 17..1328 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:41 Download gff for
BO04957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7412105..7412352 | 1427..1674 | 99 | <- | Minus |
arm_2R | 7412633..7412730 | 1329..1426 | 100 | <- | Minus |
arm_2R | 7413864..7415175 | 17..1328 | 100 | | Minus |
BO04957.pep Sequence
Translation from 16 to 1690
> BO04957.pep
MALEDRCSPQSAPSPITLQMQHLHHQQQQQQQQQQQMQHLHQLQQLQQLH
QQQLAAGVFHHPAMAFDAAAAAAAAAAAAAAHAHAAALQQRLSGSGSPAS
CSTPASSTPLTIKEEESDSVIGDMSFHNQTHTTNEEEEAEEDDDIDVDVD
DTSAGGRLPPPAHQQQSTAKPSLAFSISNILSDRFGDVQKPGKSMENQAS
IFRPFEASRSQTATPSAFTRVDLLEFSRQQQAAAAAATAAMMLERANFLN
CFNPAAYPRIHEEIVQSRLRRSAANAVIPPPMSSKMSDANPEKSALGSLC
KAVSQIGQPAAPTMTQPPLSSSASSLASPPPASNASTISSTSSVATSSSS
SSSGCSSAASSLNSSPSSRLGASGSGVNASSPQPQPIPPPSAVSRDSGME
SSDDTRSETGSTTTEGGKNEMWPAWVYCTRYSDRPSSGPRYRRPKQPKDK
TNDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKI
WFQNKRAKIKKSTGSKNPLALQLMAQGLYNHTTVPLTKEEEELEMRMNGQ
IPASFLDH
BO04957.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
en-PA | 552 | CG9015-PA | 1..552 | 1..552 | 2805 | 100 | Plus |
en-PB | 552 | CG9015-PB | 1..552 | 1..552 | 2805 | 100 | Plus |
inv-PE | 576 | CG17835-PE | 294..561 | 291..544 | 576 | 45.8 | Plus |
inv-PB | 576 | CG17835-PB | 294..561 | 291..544 | 576 | 45.8 | Plus |
inv-PD | 576 | CG17835-PD | 294..561 | 291..544 | 576 | 45.8 | Plus |