Clone BO04959 Report

Search the DGRC for BO04959

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:49
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptRanGap-RA
Protein status:BO04959.pep: validated full length
Sequenced Size:1822

Clone Sequence Records

BO04959.3prime Sequence

870 bp (817 high quality bases) assembled on 2005-12-02

> BO04959.3prime
ATGGTCTAGAAAGCTTGCCGACTCCGCACCCTCCAGGAAAGTCTTAAAGG
AATTCTTAATGTTGTCGTTGGCAAACGTTGGTTGCTTGAGAGCCTCGCGA
AGAGCAAATCGACAGTTCTTGACATCGTAGTCCGAATGGAATACCTCCTT
GCAGGGCAACAAACGGAGCTGCATCAGTACATAGTTGAGTACACGTGTCT
CCTGCTTTGTCTTGATGGCATAGTCAAAGGTGGCCTGGTACAAGGAGACG
GCCAGATCCAACGCAGCTTTCGAGGATTGCGACAAATGCGCGCACTTCAA
GGTGGTGAAGACGAGCAGTAGCAAATGGTTGTCGCCGGTGAATTGGTTGA
CAATCGACTGCAAAGCCTCAAGTTTGTTATCCATATCTAGCGAATCGAAA
TCTTCCTGGGAGCAGGGTTTCTGGCTCAAACAGAACTTCTCTGGAGTGCA
TTTTTGGCTGATCGTCTTGTTCGCGACCGCAAAAGTTTCGCTGGCCATCG
AGTTGGTTGTGTCGTTAAAAAGCTTGGTCGTGTAGGCATTCGTAGTGACA
TAGGCAGTCTCCTCCGCGACGTTGCTGTACTCCTCGTCTCCCTCGTCTTC
CTCGTCGTCCTCGTCGCCCTCGCTATCCTCATCTGCTTCTTCGGTAGTAT
CGTTGGCGTGCTCGTGTACTTCCTCTTCCTCTTCGTAATCTGCGTCCTGC
TTGTCAGCCTGGTATTCATCTTCCAAATCCTCCTCTTCCTGGTGCTGAAA
CGGTTGCAGTGCGGCAGCAGTTGGCAACTTACTCATCTCGCTGATTATCT
TCTCGCTGCCTTCTTCTCCCAAGCTATTGCCATCTAGATTCAAGATGCGT
AGCTTGGGCTTGTTTCCCAT

BO04959.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9999-PA 1791 RanGap-RA 937..1788 870..19 4235 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
RanGAP-RC 2144 CG9999-RC 1211..2062 870..19 4245 99.9 Minus
RanGAP-RB 2008 CG9999-RB 1075..1926 870..19 4245 99.9 Minus
RanGAP-RA 2401 CG9999-RA 1468..2319 870..19 4245 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19446251..19446598 870..523 1725 99.7 Minus
2L 23513712 2L 19446909..19447235 345..19 1635 100 Minus
2L 23513712 2L 19446674..19446852 524..346 895 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:32:20 has no hits.

BO04959.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:54 Download gff for BO04959.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9999-PA 937..1791 15..870 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:32:02 Download gff for BO04959.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9999-PA 937..1791 15..870 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:18:18 Download gff for BO04959.3prime
Subject Subject Range Query Range Percent Splice Strand
RanGAP-RA 1468..2324 14..870 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:37:02 Download gff for BO04959.3prime
Subject Subject Range Query Range Percent Splice Strand
RanGAP-RA 1468..2324 14..870 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:37:02 Download gff for BO04959.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19446251..19446598 523..870 99 -> Minus
2L 19446676..19446852 346..522 100 -> Minus
2L 19446909..19447240 14..345 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:18:18 Download gff for BO04959.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19446251..19446598 523..870 99 -> Minus
arm_2L 19446676..19446852 346..522 100 -> Minus
arm_2L 19446909..19447240 14..345 99   Minus

BO04959.5prime Sequence

877 bp (763 high quality bases) assembled on 2005-12-02

> BO04959.5prime
GAAGTTATCAGTCGACATGTCCACCTTTAACTTCGCCAGCATGGCCGCCC
AACTGGGCCAGGAGCAGGGAATATCATTCGAGAACAAGGTGCTTTCCTGG
AACACAGCTGCCGATGTCCAGGATGTGGTGGATGCCCTTAACAAACAGAC
CACCGTGCACTATCTGAATCTGGACGGGAACACACTGGGCGTTGAGGCCG
CCAAGGCGATTGGTGAGGGTCTGAAGCGTCATCCAGAGTTTCGGAAGGCG
CTGTGGAAGAACATGTTTACTGGTCGTCTCATATCGGAGATTCCGGAGGC
ACTCAAGCACCTGGGAGCCGCGCTAATTGTCGCGGGCGCCAAACTGACAG
TCCTGGATCTCAGCGACAATGCCTTAGGACCGAATGGCATGCGAGGCTTA
GAGGAGTTACTGCGATCCCCGGTCTGCTACTCGCTGCAGGAGCTGCTGCT
GTGCAATTGTGGCCTTGGTCCCGAGGGCGGTAGTATGCTGTCCCGGGCTC
TGATCGATCTGCATGCCAATGCCAACAAGGCGGGCTTCCCGCTCCAGCTG
CGTGTGTTCATAGGTTCGCGCAATCGTCTCGAGGATGCCGGTGCTACGGA
AATGGCAACCGCATTCCAAACCCTCAAGACCTTCGAGGAGATTGTTCTGG
AGCAAAACTCCATTTACATCGAAGGCGTCGAGGCCCTTGCCGAATCCTTC
AAGCATAATCCTCATCTACGAGTGCTAAACATGAACGACAATACTCTAAA
GTCCGAGGGAGCTGAAAAAATAGCTGAGGCTCTTCCCTTCTTGCCACTGC
TGCGTGAAATGAGCTTTGGAGACTGCCTGATCAAAACTAATGGCGCCTAC
CACTTCGGTGAGGCTCTGGAGAGAGGA

BO04959.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9999-PA 1791 RanGap-RA 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
RanGAP-RB 2008 CG9999-RB 138..999 16..877 4310 100 Plus
RanGAP-RA 2401 CG9999-RA 531..1392 16..877 4310 100 Plus
RanGAP-RC 2144 CG9999-RC 298..1135 40..877 4190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19445344..19446027 116..799 3420 100 Plus
2L 23513712 2L 19445185..19445285 16..116 505 100 Plus
2L 23513712 2L 19446097..19446175 799..877 395 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:36:51 has no hits.

BO04959.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:55 Download gff for BO04959.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9999-PA 1..860 17..876 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:32:04 Download gff for BO04959.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9999-PA 1..860 17..876 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:44:00 Download gff for BO04959.5prime
Subject Subject Range Query Range Percent Splice Strand
RanGAP-RA 525..1391 10..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:34 Download gff for BO04959.5prime
Subject Subject Range Query Range Percent Splice Strand
RanGAP-RA 525..1391 10..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:34 Download gff for BO04959.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19445179..19445285 10..116 97 -> Plus
2L 19445345..19446026 117..798 100 -> Plus
2L 19446097..19446174 799..876 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:44:00 Download gff for BO04959.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19445179..19445285 10..116 97 -> Plus
arm_2L 19445345..19446026 117..798 100 -> Plus
arm_2L 19446097..19446174 799..876 100   Plus

BO04959.complete Sequence

1822 bp (1822 high quality bases) assembled on 2006-08-21

GenBank Submission: FJ629931

> BO04959.complete
GAAGTTATCAGTCGACATGTCCACCTTTAACTTCGCCAGCATGGCCGCCC
AACTGGGCCAGGAGCAGGGAATATCATTCGAGAACAAGGTGCTTTCCTGG
AACACAGCTGCCGATGTCCAGGATGTGGTGGATGCCCTTAACAAACAGAC
CACCGTGCACTATCTGAATCTGGACGGGAACACACTGGGCGTTGAGGCCG
CCAAGGCGATTGGTGAGGGTCTGAAGCGTCATCCAGAGTTTCGGAAGGCG
CTGTGGAAGAACATGTTTACTGGTCGTCTCATATCGGAGATTCCGGAGGC
ACTCAAGCACCTGGGAGCCGCGCTAATTGTCGCGGGCGCCAAACTGACAG
TCCTGGATCTCAGCGACAATGCCTTAGGACCGAATGGCATGCGAGGCTTA
GAGGAGTTACTGCGATCCCCGGTCTGCTACTCGCTGCAGGAGCTGCTGCT
GTGCAATTGTGGCCTTGGTCCCGAGGGCGGTAGTATGCTGTCCCGGGCTC
TGATCGATCTGCATGCCAATGCCAACAAGGCGGGCTTCCCGCTCCAGCTG
CGTGTGTTCATAGGTTCGCGCAATCGTCTCGAGGATGCCGGTGCTACGGA
AATGGCAACCGCATTCCAAACCCTCAAGACCTTCGAGGAGATTGTTCTGG
AGCAAAACTCCATTTACATCGAAGGCGTCGAGGCCCTTGCCGAATCCTTC
AAGCATAATCCTCATCTACGAGTGCTAAACATGAACGACAATACTCTAAA
GTCCGAGGGAGCTGAAAAAATAGCTGAGGCTCTTCCCTTCTTGCCACTGC
TGCGTGAAATGAGCTTTGGAGACTGCCTGATCAAAACTAATGGCGCCTAC
CACTTCGGTGAGGCTCTGGAGAGAGGAAACGAACGACTGGAAGTTATCGA
CTTAGGTTTTAACGAAATCAACAGCGACGGCGGCTTGGTGTTGGTGAATG
CTATGGGAAACAAGCCCAAGCTACGCATCTTGAATCTAGATGGCAATAGC
TTTGGAGAAGAAGGCAGCGAGAAGATAATCAGCGAGATGAGTAAGTTGCC
AACTGCTGCCGCACTGCAACCGTTTCAGCACCAGGAAGAGGAGGATTTGG
AAGATGAATACCAGGCTGACAAGCAGGACGCAGATTACGAAGAGGAAGAG
GAAGTACACGAGCACGCCAACGATACTACCGAAGAAGCAGATGAGGATAG
CGAGGGCGACGAGGACGACGAGGAAGACGAGGGAGACGAGGAGTACAGCA
ACGTCGCGGAGGAGACTGCCTATGTCACTACGAATGCCTACACGACCAAG
CTTTTTAACGACACAACCAACTCGATGGCCAGCGAAACTTTTGCGGTCGC
GAACAAGACGATCAGCCAAAAATGCACTCCAGAGAAGTTCTGTTTGAGCC
AGAAACCCTGCTCCCAGGAAGATTTCGATTCGCTAGATATGGATAACAAA
CTTGAGGCTTTGCAGTCGATTGTCAACCAATTCACCGGCGACAACCATTT
GCTACTGCTCGTCTTCACCACCTTGAAGTGCGCGCATTTGTCGCAATCCT
CGAAAGCTGCGTTGGATCTGGCCGTCTCCTTGTACCAGGCCACCTTTGAC
TATGCCATCAAGACAAAGCAGGAGACACGTGTACTCAACTATGTACTGAT
GCAGCTCCGTTTGTTGCCCTGCAAGGAGGTATTCCATTCGGACTACGATG
TCAAGAACTGTCGATTTGCTCTTCGCGAGGCTCTCAAGCAACCAACGTTT
GCCAACGACAACATTAAGAATTCCTTTAAGACTTTCCTGGAGGGTGCGGA
GTCGGCAAGCTTTCTAGACCAT

BO04959.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
RanGAP-RB 1791 CG9999-PB 1..1788 17..1804 8940 100 Plus
RanGAP-RA 1791 CG9999-PA 1..1788 17..1804 8940 100 Plus
RanGAP-RC 1767 CG9999-PC 1..1764 41..1804 8820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
RanGAP-RB 2008 CG9999-RB 138..1926 16..1804 8945 100 Plus
RanGAP-RA 2401 CG9999-RA 531..2319 16..1804 8945 100 Plus
RanGAP-RC 2144 CG9999-RC 298..2062 40..1804 8825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19445344..19446027 116..799 3420 100 Plus
2L 23513712 2L 19446097..19446598 799..1300 2510 100 Plus
2L 23513712 2L 19446909..19447235 1478..1804 1635 100 Plus
2L 23513712 2L 19446674..19446852 1299..1477 895 100 Plus
2L 23513712 2L 19445185..19445285 16..116 505 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:01:23 has no hits.

BO04959.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:27 Download gff for BO04959.complete
Subject Subject Range Query Range Percent Splice Strand
RanGap-RA 1..1791 17..1808 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:50 Download gff for BO04959.complete
Subject Subject Range Query Range Percent Splice Strand
RanGap-RA 443..2242 10..1809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:23 Download gff for BO04959.complete
Subject Subject Range Query Range Percent Splice Strand
RanGAP-RA 532..2319 17..1806 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:27 Download gff for BO04959.complete
Subject Subject Range Query Range Percent Splice Strand
RanGap-RA 443..2242 10..1809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:26 Download gff for BO04959.complete
Subject Subject Range Query Range Percent Splice Strand
RanGAP-RA 532..2319 17..1806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:26 Download gff for BO04959.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19445186..19445285 17..116 100 -> Plus
2L 19445345..19446026 117..798 100 -> Plus
2L 19446097..19446598 799..1300 100 -> Plus
2L 19446676..19446852 1301..1477 100 -> Plus
2L 19446909..19447235 1478..1806 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:23 Download gff for BO04959.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19445186..19445285 17..116 100 -> Plus
arm_2L 19445345..19446026 117..798 100 -> Plus
arm_2L 19446097..19446598 799..1300 100 -> Plus
arm_2L 19446676..19446852 1301..1477 100 -> Plus
arm_2L 19446909..19447235 1478..1806 99   Plus

BO04959.pep Sequence

Translation from 16 to 1822

> BO04959.pep
MSTFNFASMAAQLGQEQGISFENKVLSWNTAADVQDVVDALNKQTTVHYL
NLDGNTLGVEAAKAIGEGLKRHPEFRKALWKNMFTGRLISEIPEALKHLG
AALIVAGAKLTVLDLSDNALGPNGMRGLEELLRSPVCYSLQELLLCNCGL
GPEGGSMLSRALIDLHANANKAGFPLQLRVFIGSRNRLEDAGATEMATAF
QTLKTFEEIVLEQNSIYIEGVEALAESFKHNPHLRVLNMNDNTLKSEGAE
KIAEALPFLPLLREMSFGDCLIKTNGAYHFGEALERGNERLEVIDLGFNE
INSDGGLVLVNAMGNKPKLRILNLDGNSFGEEGSEKIISEMSKLPTAAAL
QPFQHQEEEDLEDEYQADKQDADYEEEEEVHEHANDTTEEADEDSEGDED
DEEDEGDEEYSNVAEETAYVTTNAYTTKLFNDTTNSMASETFAVANKTIS
QKCTPEKFCLSQKPCSQEDFDSLDMDNKLEALQSIVNQFTGDNHLLLLVF
TTLKCAHLSQSSKAALDLAVSLYQATFDYAIKTKQETRVLNYVLMQLRLL
PCKEVFHSDYDVKNCRFALREALKQPTFANDNIKNSFKTFLEGAESASFL
DH

BO04959.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
RanGAP-PB 596 CG9999-PB 1..596 1..596 3056 100 Plus
RanGAP-PA 596 CG9999-PA 1..596 1..596 3056 100 Plus
RanGAP-PC 588 CG9999-PC 1..588 9..596 3016 100 Plus