Clone BO04961 Report

Search the DGRC for BO04961

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:49
Well:61
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO04961.pep: validated full length
Sequenced Size:1828

Clone Sequence Records

BO04961.3prime Sequence

979 bp (859 high quality bases) assembled on 2005-12-02

> BO04961.3prime
ATGGTCTAGAAAGCTTGCGGCGCACTCCTCCACATAGGTGGCCGGAAAGA
TGCCGATGTGATTGCGCAGGGCGCCCAGCCACCAGCCGTCGTCCTGTTTG
GCATGCACCTCGATGATGTCGCCGGGACTCAGTTCCAGCTCGTCGTAGAG
CTTCGGGGTGTAGCTATACAGTGCCTTGCAGCGTCCCAGTATCGGAACGG
ATCCGTTCTTTTGGCCCTTCTGCAGTTCCTGCGCATTCTGATAGAAATGC
TGCGTCTGCACTTGGCCATTGATGGTTGGATTTTGCAGCAACGGCTGCTG
TTGCTGCTGCTGCGATTGCAACGGCTGCGGTTGTTGCTGCGGCTGCTGCG
GCTCGTCGTCCTCGTCCTGCGAGCTGAACTCATCGAAATCAGAGTCCTGC
TGATTGGATCCACCATCCGCCTGGCCGCGATCGCTGTGATGATTATGATG
ATGATGATGGTGCTGTTGGTTATTGTGATGGCCATCCTGCAGATTGGCCA
GGGTTTTGGACTTAACGGACACGGCAATCGCGGCATTTGTCGTCGAGATT
ATCTTTGGTTGACTGGTGAAATTGGTCTCGATGTTGCTTTTGCTTCGGTT
AAAAGGCTTCACCACCGAACTGACATCTGTGCAGGAGCCGTTGCTATTAT
TGTTGCTATGGCTACTGCTGTGCAGGTGGGAGCAGTTCTCGTCGGGAAGC
TCATCCTCGTGGTTAGTGGTTATGTCGGTGATGTCGTGGGCCAGCATACT
GGTCGATTGCTGCGTCTGCGACTTGTCGTTGTTCTTCAGCCAGTTGGGCA
CCTTCAGGATGCTCTGCTGCAAACCAGTGCGGTCACGGGTGATATGAATG
TGCTGGGCCAGTGGGTGAGTGGCTCTGGGCTTGTGGTCCAGCTCCAAGAG
GGCAGAGTGCAGCTTGAGACGGGCGCCCTCAAATANGTCAGCATGGAACG
AATGTGGTACAGCTTATCGGTGATGTTCT

BO04961.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4040-PA 1797 CG4040-RA 883..1794 930..19 4560 100 Minus
CG4040-PA 1797 CG4040-RA 833..882 979..930 231 98 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG42388-RG 5133 CG42388-RG 2871..3832 979..19 4774 99.8 Minus
CG42388-RD 2735 CG42388-RD 1729..2690 979..19 4774 99.8 Minus
CG42388-RC 3014 CG42388-RC 2008..2969 979..19 4774 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9052450..9053274 843..19 4125 100 Minus
X 23542271 X 9052278..9052388 953..844 494 98.2 Minus
Blast to na_te.dros performed 2015-02-09 18:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 2631..2708 610..535 115 62.8 Minus
roo 9092 roo DM_ROO 9092bp 1102..1143 671..630 111 73.8 Minus

BO04961.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:56 Download gff for BO04961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4040-PA 833..1797 18..979 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:32:05 Download gff for BO04961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4040-PA 833..1797 18..979 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:13 Download gff for BO04961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42388-RC 2008..2974 11..979 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:58 Download gff for BO04961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42388-RC 2008..2974 11..979 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:58 Download gff for BO04961.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9052192..9052217 954..979 100 -> Minus
X 9052278..9052388 844..953 98 -> Minus
X 9052450..9053279 11..843 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:13 Download gff for BO04961.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8946225..8946250 954..979 100 -> Minus
arm_X 8946311..8946421 844..953 98 -> Minus
arm_X 8946483..8947312 11..843 99   Minus

BO04961.5prime Sequence

887 bp (886 high quality bases) assembled on 2005-12-02

> BO04961.5prime
GAAGTTATCAGTCGACATGGAGAGCCGCAGCGACATCCATCGCCAGTTGG
CAGCCTCGCTAACGGATGAGCTGGTCAAGCCGCTCAAGATCGTCGTCGAA
GGACATCACAAGGCGCGCAAGGCGGTGGAAAGCAACGTGGACAAGGCGGC
GCGAGTACTGGGCGAATGGCGAGCCAGCGAGGCGAAAGCCAAGAAGGCCT
CCCATACGGCGGCGCGCGAGAACGAGAAGCTGCAGGACGCAATGCTGGAC
GTGCGCATCCAGAAGTCACCATCGATTGCCCTGCTCCACCAGGGACCCAA
CAAGCAGGCCGCAGAAAAGGAGCTCAAGTCAGCGGAGAAGGATTGCGTCA
AGCTGGATAACAAGCGCAAGAAGGCCGAGGAGGCGGTGAAGCGTGCGGAT
GTGGAATACTACACCCTGTGCGTGCGTTCGGAGCGAGCACGCGTAGACTG
GGAGATGGCCGTGCTCCGGGGAAGTGCCCAACTGCAGAGCAGCGAACAGC
AGCGGCTGGGCAATATGCACAACTTTGCCCAGCAGTATGCACGCCTCATC
TCGGACATGAATCCGATACTCGGTGGCCTGAGCACACGCCTGCAGCCGCA
ACTCGATGCTTGCAATGTGGCTAAGGATATGCAAGTGGTGCGCCACATCC
GCCGCAATTCGGAGGGACCCAGTGAGCAACTCCTACCGGACTTTTACTGC
GAACACACCACGCTGGCCATGAATCGGGAGCGTCGCAAGCACGCTCTGAT
CAAGCTGCTGCAGCTGGTCAAGACGGATCTGGAGCGGGAGCGACGATCCC
GCGACGGATTGAGGGGACTGTCGCAATCGCTTAACCATCANGAGCATCAG
AACATCACCGATNAGCTGTACCACATTCGTTCCATGC

BO04961.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4040-PA 1797 CG4040-RA 1..871 17..887 4317 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG42388-RG 5133 CG42388-RG 2039..2909 17..887 4333 99.8 Plus
CG42388-RD 2735 CG42388-RD 897..1767 17..887 4333 99.8 Plus
CG42388-RC 3014 CG42388-RC 1176..2046 17..887 4333 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9051467..9052217 124..874 3733 99.7 Plus
X 23542271 X 9051303..9051412 17..126 550 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:38:10 has no hits.

BO04961.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:56 Download gff for BO04961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4040-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:32:07 Download gff for BO04961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4040-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:44:02 Download gff for BO04961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42388-RC 1173..2046 14..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:42 Download gff for BO04961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42388-RC 1173..2046 14..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:42 Download gff for BO04961.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9051300..9051410 14..124 99 -> Plus
X 9051468..9052217 125..874 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:44:02 Download gff for BO04961.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8945333..8945443 14..124 99 -> Plus
arm_X 8945501..8946250 125..874 99 -> Plus

BO04961.complete Sequence

1828 bp (1828 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ629932

> BO04961.complete
GAAGTTATCAGTCGACATGGAGAGCCGCAGCGACATCCATCGCCAGTTGG
CAGCCTCGCTAACGGATGAGCTGGTCAAGCCGCTCAAGATCGTCGTCGAA
GGACATCACAAGGCGCGCAAGGCGGTGGAAAGCAACGTGGACAAGGCGGC
GCGAGTACTGGGCGAATGGCGAGCCAGCGAGGCGAAAGCCAAGAAGGCCT
CCCATACGGCGGCGCGCGAGAACGAGAAGCTGCAGGACGCAATGCTGGAC
GTGCGCATCCAGAAGTCACCATCGATTGCCCTGCTCCACCAGGGACCCAA
CAAGCAGGCCGCAGAAAAGGAGCTCAAGTCAGCGGAGAAGGATTGCGTCA
AGCTGGATAACAAGCGCAAGAAGGCCGAGGAGGCGGTGAAGCGTGCGGAT
GTGGAATACTACACCCTGTGCGTGCGTTCGGAGCGAGCACGCGTAGACTG
GGAGATGGCCGTGCTCCGGGGAAGTGCCCAACTGCAGAGCAGCGAACAGC
AGCGGCTGGGCAATATGCACAACTTTGCCCAGCAGTATGCACGCCTCATC
TCGGACATGAATCCGATACTCGGTGGCCTGAGCACACGCCTGCAGCCGCA
ACTCGATGCTTGCAATGTGGCTAAGGATATGCAAGTGGTGCGCCACATCC
GCCGCAATTCGGAGGGACCCAGTGAGCAACTCCTACCGGACTTTTACTGC
GAACACACCACGCTGGCCATGAATCGGGAGCGTCGCAAGCACGCTCTGAT
CAAGCTGCTGCAGCTGGTCAAGACGGATCTGGAGCGGGAGCGACGATCCC
GCGACGGATTGAGGGGACTGTCGCAATCGCTTAACCATCAGGAGCATCAG
AACATCACCGATAAGCTGTACCACATTCGTTCCATGCTGACCTATTTGGA
GGGCGCCCGTCTCAAGCTGCACTCTGCCCTCTTGGAGCTGGACCACAAGC
CCAGAGCCACTCACCCACTGGCCCAGCACATTCATATCACCCGTGACCGC
ACTGGTTTGCAGCAGAGCATCCTGAAGGTGCCCAACTGGCTGAAGAACAA
CGACAAGTCGCAGACGCAGCAATCGACCAGTATGCTGGCCCACGACATCA
CCGACATAACCACTAACCACGAGGATGAGCTTCCCGACGAGAACTGCTCC
CACCTGCACAGCAGTAGCCATAGCAACAATAATAGCAACGGCTCCTGCAC
AGATGTCAGTTCGGTGGTGAAGCCTTTTAACCGAAGCAAAAGCAACATCG
AGACCAATTTCACCAGTCAACCAAAGATAATCTCGACGACAAATGCCGCG
ATTGCCGTGTCCGTTAAGTCCAAAACCCTGGCCAATCTGCAGGATGGCCA
TCACAATAACCAACAGCACCATCATCATCATCATAATCATCACAGCGATC
GCGGCCAGGCGGATGGTGGATCCAATCAGCAGGACTCTGATTTCGATGAG
TTCAGCTCGCAGGACGAGGACGACGAGCCGCAGCAGCCGCAGCAACAACC
GCAGCCGTTGCAATCGCAGCAGCAGCAACAGCAGCCGTTGCTGCAAAATC
CAACCATCAATGGCCAAGTGCAGACGCAGCATTTCTATCAGAATGCGCAG
GAACTGCAGAAGGGCCAAAAGAACGGATCCGTTCCGATACTGGGACGCTG
CAAGGCACTGTATAGCTACACCCCGAAGCTCTACGACGAGCTGGAACTGA
GTCCCGGCGACATCATCGAGGTGCATGCCAAACAGGACGACGGCTGGTGG
CTGGGCGCCCTGCGCAATCACATCGGCATCTTTCCGGCCACCTATGTGGA
GGAGTGCGCCGCAAGCTTTCTAGACCAT

BO04961.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG42388-RG 3678 CG42388-PG 1882..3675 17..1810 8970 100 Plus
CG42388-RD 2028 CG42388-PD 232..2025 17..1810 8970 100 Plus
CG42388-RC 2307 CG42388-PC 511..2304 17..1810 8970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG42388-RG 5133 CG42388-RG 2039..3832 17..1810 8970 100 Plus
CG42388-RD 2735 CG42388-RD 897..2690 17..1810 8970 100 Plus
CG42388-RC 3014 CG42388-RC 1176..2969 17..1810 8970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9052450..9053274 986..1810 4125 100 Plus
X 23542271 X 9051467..9052217 124..874 3755 100 Plus
X 23542271 X 9052278..9052388 875..985 555 100 Plus
X 23542271 X 9051303..9051412 17..126 550 100 Plus
Blast to na_te.dros performed 2014-11-27 19:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 2631..2708 1219..1294 115 62.8 Plus

BO04961.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:57 Download gff for BO04961.complete
Subject Subject Range Query Range Percent Splice Strand
CG4040-RA 1..1797 17..1811 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:01 Download gff for BO04961.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RF 667..2468 14..1818 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:35 Download gff for BO04961.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RC 1176..2969 17..1812 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:57 Download gff for BO04961.complete
Subject Subject Range Query Range Percent Splice Strand
CG4040-RA 144..1945 14..1818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:45 Download gff for BO04961.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RC 1176..2969 17..1812 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:45 Download gff for BO04961.complete
Subject Subject Range Query Range Percent Splice Strand
X 9051303..9051410 17..124 100 -> Plus
X 9051468..9052217 125..874 100 -> Plus
X 9052278..9052388 875..985 100 -> Plus
X 9052450..9053274 986..1812 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:35 Download gff for BO04961.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8946311..8946421 875..985 100 -> Plus
arm_X 8945336..8945443 17..124 100 -> Plus
arm_X 8945501..8946250 125..874 100 -> Plus
arm_X 8946483..8947307 986..1812 99   Plus

BO04961.pep Sequence

Translation from 16 to 1828

> BO04961.pep
MESRSDIHRQLAASLTDELVKPLKIVVEGHHKARKAVESNVDKAARVLGE
WRASEAKAKKASHTAARENEKLQDAMLDVRIQKSPSIALLHQGPNKQAAE
KELKSAEKDCVKLDNKRKKAEEAVKRADVEYYTLCVRSERARVDWEMAVL
RGSAQLQSSEQQRLGNMHNFAQQYARLISDMNPILGGLSTRLQPQLDACN
VAKDMQVVRHIRRNSEGPSEQLLPDFYCEHTTLAMNRERRKHALIKLLQL
VKTDLERERRSRDGLRGLSQSLNHQEHQNITDKLYHIRSMLTYLEGARLK
LHSALLELDHKPRATHPLAQHIHITRDRTGLQQSILKVPNWLKNNDKSQT
QQSTSMLAHDITDITTNHEDELPDENCSHLHSSSHSNNNSNGSCTDVSSV
VKPFNRSKSNIETNFTSQPKIISTTNAAIAVSVKSKTLANLQDGHHNNQQ
HHHHHHNHHSDRGQADGGSNQQDSDFDEFSSQDEDDEPQQPQQQPQPLQS
QQQQQQPLLQNPTINGQVQTQHFYQNAQELQKGQKNGSVPILGRCKALYS
YTPKLYDELELSPGDIIEVHAKQDDGWWLGALRNHIGIFPATYVEECAAS
FLDH

BO04961.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG42388-PG 1225 CG42388-PG 628..1225 1..598 3124 100 Plus
CG42388-PD 675 CG42388-PD 78..675 1..598 3124 100 Plus
CG42388-PC 768 CG42388-PC 171..768 1..598 3124 100 Plus
CG42388-PF 671 CG42388-PF 74..671 1..598 3124 100 Plus
CG42388-PE 1225 CG42388-PE 628..1225 1..598 3124 100 Plus