Clone Sequence Records
BO04961.3prime Sequence
979 bp (859 high quality bases) assembled on 2005-12-02
> BO04961.3prime
ATGGTCTAGAAAGCTTGCGGCGCACTCCTCCACATAGGTGGCCGGAAAGA
TGCCGATGTGATTGCGCAGGGCGCCCAGCCACCAGCCGTCGTCCTGTTTG
GCATGCACCTCGATGATGTCGCCGGGACTCAGTTCCAGCTCGTCGTAGAG
CTTCGGGGTGTAGCTATACAGTGCCTTGCAGCGTCCCAGTATCGGAACGG
ATCCGTTCTTTTGGCCCTTCTGCAGTTCCTGCGCATTCTGATAGAAATGC
TGCGTCTGCACTTGGCCATTGATGGTTGGATTTTGCAGCAACGGCTGCTG
TTGCTGCTGCTGCGATTGCAACGGCTGCGGTTGTTGCTGCGGCTGCTGCG
GCTCGTCGTCCTCGTCCTGCGAGCTGAACTCATCGAAATCAGAGTCCTGC
TGATTGGATCCACCATCCGCCTGGCCGCGATCGCTGTGATGATTATGATG
ATGATGATGGTGCTGTTGGTTATTGTGATGGCCATCCTGCAGATTGGCCA
GGGTTTTGGACTTAACGGACACGGCAATCGCGGCATTTGTCGTCGAGATT
ATCTTTGGTTGACTGGTGAAATTGGTCTCGATGTTGCTTTTGCTTCGGTT
AAAAGGCTTCACCACCGAACTGACATCTGTGCAGGAGCCGTTGCTATTAT
TGTTGCTATGGCTACTGCTGTGCAGGTGGGAGCAGTTCTCGTCGGGAAGC
TCATCCTCGTGGTTAGTGGTTATGTCGGTGATGTCGTGGGCCAGCATACT
GGTCGATTGCTGCGTCTGCGACTTGTCGTTGTTCTTCAGCCAGTTGGGCA
CCTTCAGGATGCTCTGCTGCAAACCAGTGCGGTCACGGGTGATATGAATG
TGCTGGGCCAGTGGGTGAGTGGCTCTGGGCTTGTGGTCCAGCTCCAAGAG
GGCAGAGTGCAGCTTGAGACGGGCGCCCTCAAATANGTCAGCATGGAACG
AATGTGGTACAGCTTATCGGTGATGTTCT
BO04961.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4040-PA | 1797 | CG4040-RA | 883..1794 | 930..19 | 4560 | 100 | Minus |
CG4040-PA | 1797 | CG4040-RA | 833..882 | 979..930 | 231 | 98 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42388-RG | 5133 | CG42388-RG | 2871..3832 | 979..19 | 4774 | 99.8 | Minus |
CG42388-RD | 2735 | CG42388-RD | 1729..2690 | 979..19 | 4774 | 99.8 | Minus |
CG42388-RC | 3014 | CG42388-RC | 2008..2969 | 979..19 | 4774 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:42:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9052450..9053274 | 843..19 | 4125 | 100 | Minus |
X | 23542271 | X | 9052278..9052388 | 953..844 | 494 | 98.2 | Minus |
Blast to na_te.dros performed 2015-02-09 18:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 2631..2708 | 610..535 | 115 | 62.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1102..1143 | 671..630 | 111 | 73.8 | Minus |
BO04961.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:56 Download gff for
BO04961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4040-PA | 833..1797 | 18..979 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:32:05 Download gff for
BO04961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4040-PA | 833..1797 | 18..979 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:13 Download gff for
BO04961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42388-RC | 2008..2974 | 11..979 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:58 Download gff for
BO04961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42388-RC | 2008..2974 | 11..979 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:58 Download gff for
BO04961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9052192..9052217 | 954..979 | 100 | -> | Minus |
X | 9052278..9052388 | 844..953 | 98 | -> | Minus |
X | 9052450..9053279 | 11..843 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:13 Download gff for
BO04961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8946225..8946250 | 954..979 | 100 | -> | Minus |
arm_X | 8946311..8946421 | 844..953 | 98 | -> | Minus |
arm_X | 8946483..8947312 | 11..843 | 99 | | Minus |
BO04961.5prime Sequence
887 bp (886 high quality bases) assembled on 2005-12-02
> BO04961.5prime
GAAGTTATCAGTCGACATGGAGAGCCGCAGCGACATCCATCGCCAGTTGG
CAGCCTCGCTAACGGATGAGCTGGTCAAGCCGCTCAAGATCGTCGTCGAA
GGACATCACAAGGCGCGCAAGGCGGTGGAAAGCAACGTGGACAAGGCGGC
GCGAGTACTGGGCGAATGGCGAGCCAGCGAGGCGAAAGCCAAGAAGGCCT
CCCATACGGCGGCGCGCGAGAACGAGAAGCTGCAGGACGCAATGCTGGAC
GTGCGCATCCAGAAGTCACCATCGATTGCCCTGCTCCACCAGGGACCCAA
CAAGCAGGCCGCAGAAAAGGAGCTCAAGTCAGCGGAGAAGGATTGCGTCA
AGCTGGATAACAAGCGCAAGAAGGCCGAGGAGGCGGTGAAGCGTGCGGAT
GTGGAATACTACACCCTGTGCGTGCGTTCGGAGCGAGCACGCGTAGACTG
GGAGATGGCCGTGCTCCGGGGAAGTGCCCAACTGCAGAGCAGCGAACAGC
AGCGGCTGGGCAATATGCACAACTTTGCCCAGCAGTATGCACGCCTCATC
TCGGACATGAATCCGATACTCGGTGGCCTGAGCACACGCCTGCAGCCGCA
ACTCGATGCTTGCAATGTGGCTAAGGATATGCAAGTGGTGCGCCACATCC
GCCGCAATTCGGAGGGACCCAGTGAGCAACTCCTACCGGACTTTTACTGC
GAACACACCACGCTGGCCATGAATCGGGAGCGTCGCAAGCACGCTCTGAT
CAAGCTGCTGCAGCTGGTCAAGACGGATCTGGAGCGGGAGCGACGATCCC
GCGACGGATTGAGGGGACTGTCGCAATCGCTTAACCATCANGAGCATCAG
AACATCACCGATNAGCTGTACCACATTCGTTCCATGC
BO04961.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4040-PA | 1797 | CG4040-RA | 1..871 | 17..887 | 4317 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42388-RG | 5133 | CG42388-RG | 2039..2909 | 17..887 | 4333 | 99.8 | Plus |
CG42388-RD | 2735 | CG42388-RD | 897..1767 | 17..887 | 4333 | 99.8 | Plus |
CG42388-RC | 3014 | CG42388-RC | 1176..2046 | 17..887 | 4333 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9051467..9052217 | 124..874 | 3733 | 99.7 | Plus |
X | 23542271 | X | 9051303..9051412 | 17..126 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:38:10 has no hits.
BO04961.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:56 Download gff for
BO04961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4040-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:32:07 Download gff for
BO04961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4040-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:44:02 Download gff for
BO04961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42388-RC | 1173..2046 | 14..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:42 Download gff for
BO04961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42388-RC | 1173..2046 | 14..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:42 Download gff for
BO04961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9051300..9051410 | 14..124 | 99 | -> | Plus |
X | 9051468..9052217 | 125..874 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:44:02 Download gff for
BO04961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8945333..8945443 | 14..124 | 99 | -> | Plus |
arm_X | 8945501..8946250 | 125..874 | 99 | -> | Plus |
BO04961.complete Sequence
1828 bp (1828 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629932
> BO04961.complete
GAAGTTATCAGTCGACATGGAGAGCCGCAGCGACATCCATCGCCAGTTGG
CAGCCTCGCTAACGGATGAGCTGGTCAAGCCGCTCAAGATCGTCGTCGAA
GGACATCACAAGGCGCGCAAGGCGGTGGAAAGCAACGTGGACAAGGCGGC
GCGAGTACTGGGCGAATGGCGAGCCAGCGAGGCGAAAGCCAAGAAGGCCT
CCCATACGGCGGCGCGCGAGAACGAGAAGCTGCAGGACGCAATGCTGGAC
GTGCGCATCCAGAAGTCACCATCGATTGCCCTGCTCCACCAGGGACCCAA
CAAGCAGGCCGCAGAAAAGGAGCTCAAGTCAGCGGAGAAGGATTGCGTCA
AGCTGGATAACAAGCGCAAGAAGGCCGAGGAGGCGGTGAAGCGTGCGGAT
GTGGAATACTACACCCTGTGCGTGCGTTCGGAGCGAGCACGCGTAGACTG
GGAGATGGCCGTGCTCCGGGGAAGTGCCCAACTGCAGAGCAGCGAACAGC
AGCGGCTGGGCAATATGCACAACTTTGCCCAGCAGTATGCACGCCTCATC
TCGGACATGAATCCGATACTCGGTGGCCTGAGCACACGCCTGCAGCCGCA
ACTCGATGCTTGCAATGTGGCTAAGGATATGCAAGTGGTGCGCCACATCC
GCCGCAATTCGGAGGGACCCAGTGAGCAACTCCTACCGGACTTTTACTGC
GAACACACCACGCTGGCCATGAATCGGGAGCGTCGCAAGCACGCTCTGAT
CAAGCTGCTGCAGCTGGTCAAGACGGATCTGGAGCGGGAGCGACGATCCC
GCGACGGATTGAGGGGACTGTCGCAATCGCTTAACCATCAGGAGCATCAG
AACATCACCGATAAGCTGTACCACATTCGTTCCATGCTGACCTATTTGGA
GGGCGCCCGTCTCAAGCTGCACTCTGCCCTCTTGGAGCTGGACCACAAGC
CCAGAGCCACTCACCCACTGGCCCAGCACATTCATATCACCCGTGACCGC
ACTGGTTTGCAGCAGAGCATCCTGAAGGTGCCCAACTGGCTGAAGAACAA
CGACAAGTCGCAGACGCAGCAATCGACCAGTATGCTGGCCCACGACATCA
CCGACATAACCACTAACCACGAGGATGAGCTTCCCGACGAGAACTGCTCC
CACCTGCACAGCAGTAGCCATAGCAACAATAATAGCAACGGCTCCTGCAC
AGATGTCAGTTCGGTGGTGAAGCCTTTTAACCGAAGCAAAAGCAACATCG
AGACCAATTTCACCAGTCAACCAAAGATAATCTCGACGACAAATGCCGCG
ATTGCCGTGTCCGTTAAGTCCAAAACCCTGGCCAATCTGCAGGATGGCCA
TCACAATAACCAACAGCACCATCATCATCATCATAATCATCACAGCGATC
GCGGCCAGGCGGATGGTGGATCCAATCAGCAGGACTCTGATTTCGATGAG
TTCAGCTCGCAGGACGAGGACGACGAGCCGCAGCAGCCGCAGCAACAACC
GCAGCCGTTGCAATCGCAGCAGCAGCAACAGCAGCCGTTGCTGCAAAATC
CAACCATCAATGGCCAAGTGCAGACGCAGCATTTCTATCAGAATGCGCAG
GAACTGCAGAAGGGCCAAAAGAACGGATCCGTTCCGATACTGGGACGCTG
CAAGGCACTGTATAGCTACACCCCGAAGCTCTACGACGAGCTGGAACTGA
GTCCCGGCGACATCATCGAGGTGCATGCCAAACAGGACGACGGCTGGTGG
CTGGGCGCCCTGCGCAATCACATCGGCATCTTTCCGGCCACCTATGTGGA
GGAGTGCGCCGCAAGCTTTCTAGACCAT
BO04961.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:55:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42388-RG | 3678 | CG42388-PG | 1882..3675 | 17..1810 | 8970 | 100 | Plus |
CG42388-RD | 2028 | CG42388-PD | 232..2025 | 17..1810 | 8970 | 100 | Plus |
CG42388-RC | 2307 | CG42388-PC | 511..2304 | 17..1810 | 8970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42388-RG | 5133 | CG42388-RG | 2039..3832 | 17..1810 | 8970 | 100 | Plus |
CG42388-RD | 2735 | CG42388-RD | 897..2690 | 17..1810 | 8970 | 100 | Plus |
CG42388-RC | 3014 | CG42388-RC | 1176..2969 | 17..1810 | 8970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9052450..9053274 | 986..1810 | 4125 | 100 | Plus |
X | 23542271 | X | 9051467..9052217 | 124..874 | 3755 | 100 | Plus |
X | 23542271 | X | 9052278..9052388 | 875..985 | 555 | 100 | Plus |
X | 23542271 | X | 9051303..9051412 | 17..126 | 550 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 19:55:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 2631..2708 | 1219..1294 | 115 | 62.8 | Plus |
BO04961.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:57 Download gff for
BO04961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4040-RA | 1..1797 | 17..1811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:01 Download gff for
BO04961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42388-RF | 667..2468 | 14..1818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:35 Download gff for
BO04961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42388-RC | 1176..2969 | 17..1812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:57 Download gff for
BO04961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4040-RA | 144..1945 | 14..1818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:45 Download gff for
BO04961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42388-RC | 1176..2969 | 17..1812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:45 Download gff for
BO04961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9051303..9051410 | 17..124 | 100 | -> | Plus |
X | 9051468..9052217 | 125..874 | 100 | -> | Plus |
X | 9052278..9052388 | 875..985 | 100 | -> | Plus |
X | 9052450..9053274 | 986..1812 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:35 Download gff for
BO04961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8946311..8946421 | 875..985 | 100 | -> | Plus |
arm_X | 8945336..8945443 | 17..124 | 100 | -> | Plus |
arm_X | 8945501..8946250 | 125..874 | 100 | -> | Plus |
arm_X | 8946483..8947307 | 986..1812 | 99 | | Plus |
BO04961.pep Sequence
Translation from 16 to 1828
> BO04961.pep
MESRSDIHRQLAASLTDELVKPLKIVVEGHHKARKAVESNVDKAARVLGE
WRASEAKAKKASHTAARENEKLQDAMLDVRIQKSPSIALLHQGPNKQAAE
KELKSAEKDCVKLDNKRKKAEEAVKRADVEYYTLCVRSERARVDWEMAVL
RGSAQLQSSEQQRLGNMHNFAQQYARLISDMNPILGGLSTRLQPQLDACN
VAKDMQVVRHIRRNSEGPSEQLLPDFYCEHTTLAMNRERRKHALIKLLQL
VKTDLERERRSRDGLRGLSQSLNHQEHQNITDKLYHIRSMLTYLEGARLK
LHSALLELDHKPRATHPLAQHIHITRDRTGLQQSILKVPNWLKNNDKSQT
QQSTSMLAHDITDITTNHEDELPDENCSHLHSSSHSNNNSNGSCTDVSSV
VKPFNRSKSNIETNFTSQPKIISTTNAAIAVSVKSKTLANLQDGHHNNQQ
HHHHHHNHHSDRGQADGGSNQQDSDFDEFSSQDEDDEPQQPQQQPQPLQS
QQQQQQPLLQNPTINGQVQTQHFYQNAQELQKGQKNGSVPILGRCKALYS
YTPKLYDELELSPGDIIEVHAKQDDGWWLGALRNHIGIFPATYVEECAAS
FLDH
BO04961.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42388-PG | 1225 | CG42388-PG | 628..1225 | 1..598 | 3124 | 100 | Plus |
CG42388-PD | 675 | CG42388-PD | 78..675 | 1..598 | 3124 | 100 | Plus |
CG42388-PC | 768 | CG42388-PC | 171..768 | 1..598 | 3124 | 100 | Plus |
CG42388-PF | 671 | CG42388-PF | 74..671 | 1..598 | 3124 | 100 | Plus |
CG42388-PE | 1225 | CG42388-PE | 628..1225 | 1..598 | 3124 | 100 | Plus |