Clone BO04962 Report

Search the DGRC for BO04962

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:49
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG1227-RA
Protein status:BO04962.pep: validated full length
Sequenced Size:994

Clone Sequence Records

BO04962.3prime Sequence

980 bp (907 high quality bases) assembled on 2005-12-02

> BO04962.3prime
ATGGTCTAGAAAGCTTGCCAAGCGACCCTCCAGTTTCTGTATCAGATCGT
GGGTCCTTTCGATAACACTAAACACGAATGGCCGTTCCATTGGATCTGTT
CGCAGCATGTACTTAATTAATTCGTGCATGTCCTCTGTGTAAATTGAATC
CTCTGGAATGTTTATGTTCCCACTGAGCACAGCCAAAGCCACGCTGTCAC
CTCGCTCGTAGATGGGATCGTAGGGTGAATTAAAGTAGCACATTGCATAG
AGCACACAGCCAAGACTCCATATGTCAGTGCGCTCGTCAATTGTGCAATA
TGTTTTCACGGTAAATAACTCTGGAGCCCGGTAGACAATGGAGCTCCTCT
CCTCGGCTTCGTCCTGCAAGCGCTGAGCATCCGTCTGGCCCACAATCTGC
AGTCGGGCTTCTGTCATTGACCCGAGATCCACAATAATTGGCTCAAAAGA
GTCCGACAGGCAGATGTTGGCCGTTTTTAGATCTCGGTGGGCCAGAGGCA
CCGGCATTGCCTCGTGGATGGCCTTCAATCCCTCGCAGACGCCCAGAAAG
ATTTGCAGGATCTGGGCCTCGGGCATGTGGTCCTGTTTCCGCGATCGCAG
CTGAAGGTGGTCCGCAAGAGATCCGTGCTTGTAATAGGGAAGCACAATGA
ACAAGGTGCTCGTTGTGTTTATAACTATGTCCGCCTGGCCCTTCAGCTCG
TAATCCACTACCCGGATCACGTTTTCCGAGTCAATTTTTCGACAGTTTTC
GATTTCTCGCAGAGCTATATTCTGATCATCGATGCTGTGGCAGGTGATGC
GCTTTATCGCATAGCTACGTCGCGTGGAGGCGTTTTCCCCAAGGTCGATT
AGACTGAAGCCCCCCGTCGCCAGCCTTTCGCGGATTGTGTATCGAGATCC
GTTTATGTTCAGGGTCTCCTTTGCGGCACTAAAGAGGCAGCCGCGTTTCA
TGATCAGCGTCCATCCTATACTCTGCATGT

BO04962.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-PA 963 CG1227-RA 58..960 921..19 4515 100 Minus
CG1227-PA 963 CG1227-RA 1..51 978..928 255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-RB 1174 CG1227-RB 78..1037 978..19 4755 99.8 Minus
CG1227-RA 1415 CG1227-RA 319..1278 978..19 4755 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7248650..7249245 268..863 2980 100 Plus
3R 32079331 3R 7248456..7248592 132..268 685 100 Plus
3R 32079331 3R 7248288..7248403 19..134 580 100 Plus
3R 32079331 3R 7249304..7249420 862..978 510 95.7 Plus
Blast to na_te.dros performed on 2015-02-12 14:13:59 has no hits.

BO04962.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:58 Download gff for BO04962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1227-PA 1..963 18..978 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:32:08 Download gff for BO04962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1227-PA 1..963 18..978 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:06:42 Download gff for BO04962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 317..1283 12..980 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:07 Download gff for BO04962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 317..1283 12..980 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:07 Download gff for BO04962.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7249305..7249421 863..980 97   Plus
3R 7248283..7248401 12..132 97 <- Plus
3R 7248457..7248591 133..267 100 <- Plus
3R 7248650..7249244 268..862 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:06:42 Download gff for BO04962.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3074005..3074123 12..132 97 <- Plus
arm_3R 3074179..3074313 133..267 100 <- Plus
arm_3R 3074372..3074966 268..862 100 <- Plus
arm_3R 3075027..3075143 863..980 97   Plus

BO04962.5prime Sequence

842 bp (840 high quality bases) assembled on 2005-11-29

> BO04962.5prime
GAAGTTATCAGTCGACATGCAGAGTATAGGATGGACGCTGATCATGAAAC
GCGGCTGCCTCTTTAGTTGCCGCAAGGAGACCCTGAACATAAACGGATCT
CGATACACAATCCGCGAAAGGCTGGCGACGGGGGGCTTCAGTCTAATCGA
CCTTGGGGAAAACGCCTCCACGCGACGTAGCTATGCGATAAAGCGCATCA
CCTGCCACAGCATCGATGATCAGAATATAGCTCTGCGAGAAATCGAAAAC
TGTCGAAAAATTGACTCGGAAAACGTGATCCGGGTAGTGGATTACGAGCT
GAAGGGCCAGGCGGACATAGTTATAAACACAACGAGCACCTTGTTCATTG
TGCTTCCCTATTACAAGCACGGATCTCTTGCGGACCACCTTCAGCTGCGA
TCGCGGAAACAGGACCACATGCCCGAGGCCCAGATCCTGCAAATCTTTCT
GGGCGTCTGCGAGGGATTGAAGGCCATCCACGAGGCAATGCCGGTGCCTC
TGGCCCACCGAGATCTAAAAACGGCCAACATCTGCCTGTCGGACTCTTTT
GAGCCAATTATTGTGGATCTCGGGTCAATGACAGAAGCCCGACTGCAGAT
TGTGGGCCAGACGGATGCTCAGCGCTTGCAGGACGAAGCCGAGGAGAGGA
GCTCCATTGTCTACCGGGCTCCAGAGTTATTTACCGTGAAAACATATTGC
ACAATTGACGAGCGCACTGACATATGGAGTCTTGGCTGTGTGCTCTATGC
AATGTGCTACTTTAATTCACCCTACGATCCCATCTACGAGCGAGGTGACA
GCGTGGCTTTGGCTGTGCTCAGTGGGAACATAAACATTCCAG

BO04962.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-PA 963 CG1227-RA 1..826 17..842 4130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-RB 1174 CG1227-RB 78..903 17..842 4130 100 Plus
CG1227-RA 1415 CG1227-RA 319..1144 17..842 4130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7248650..7249245 727..132 2980 100 Minus
3R 32079331 3R 7249304..7249420 133..17 585 100 Minus
3R 32079331 3R 7248477..7248592 842..727 580 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:44:38 has no hits.

BO04962.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:59 Download gff for BO04962.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1227-PA 1..826 17..842 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:32:09 Download gff for BO04962.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1227-PA 1..826 17..842 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:35:10 Download gff for BO04962.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 313..1144 10..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:30 Download gff for BO04962.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 313..1144 10..842 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:30 Download gff for BO04962.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7248477..7248591 728..842 100 <- Minus
3R 7248650..7249244 133..727 100 <- Minus
3R 7249305..7249426 10..132 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:35:10 Download gff for BO04962.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3074199..3074313 728..842 100 <- Minus
arm_3R 3074372..3074966 133..727 100 <- Minus
arm_3R 3075027..3075148 10..132 96   Minus

BO04962.complete Sequence

994 bp (994 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629933

> BO04962.complete
GAAGTTATCAGTCGACATGCAGAGTATAGGATGGACGCTGATCATGAAAC
GCGGCTGCCTCTTTAGTTGCCGCAAGGAGACCCTGAACATAAACGGATCT
CGATACACAATCCGCGAAAGGCTGGCGACGGGGGGCTTCAGTCTAATCGA
CCTTGGGGAAAACGCCTCCACGCGACGTAGCTATGCGATAAAGCGCATCA
CCTGCCACAGCATCGATGATCAGAATATAGCTCTGCGAGAAATCGAAAAC
TGTCGAAAAATTGACTCGGAAAACGTGATCCGGGTAGTGGATTACGAGCT
GAAGGGCCAGGCGGACATAGTTATAAACACAACGAGCACCTTGTTCATTG
TGCTTCCCTATTACAAGCACGGATCTCTTGCGGACCACCTTCAGCTGCGA
TCGCGGAAACAGGACCACATGCCCGAGGCCCAGATCCTGCAAATCTTTCT
GGGCGTCTGCGAGGGATTGAAGGCCATCCACGAGGCAATGCCGGTGCCTC
TGGCCCACCGAGATCTAAAAACGGCCAACATCTGCCTGTCGGACTCTTTT
GAGCCAATTATTGTGGATCTCGGGTCAATGACAGAAGCCCGACTGCAGAT
TGTGGGCCAGACGGATGCTCAGCGCTTGCAGGACGAAGCCGAGGAGAGGA
GCTCCATTGTCTACCGGGCTCCAGAGTTATTTACCGTGAAAACATATTGC
ACAATTGACGAGCGCACTGACATATGGAGTCTTGGCTGTGTGCTCTATGC
AATGTGCTACTTTAATTCACCCTACGATCCCATCTACGAGCGAGGTGACA
GCGTGGCTTTGGCTGTGCTCAGTGGGAACATAAACATTCCAGAGGATTCA
ATTTACACAGAGGACATGCACGAATTAATTAAGTACATGCTGCGAACAGA
TCCAATGGAACGGCCATTCGTGTTTAGTGTTATCGAAAGGACCCACGATC
TGATACAGAAACTGGAGGGTCGCTTGGCAAGCTTTCTAGACCAT

BO04962.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-RB 963 CG1227-PB 1..960 17..976 4800 100 Plus
CG1227-RA 963 CG1227-PA 1..960 17..976 4800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-RB 1174 CG1227-RB 78..1037 17..976 4800 100 Plus
CG1227-RA 1415 CG1227-RA 319..1278 17..976 4800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7248650..7249245 727..132 2980 100 Minus
3R 32079331 3R 7248456..7248592 863..727 685 100 Minus
3R 32079331 3R 7249304..7249420 133..17 585 100 Minus
3R 32079331 3R 7248288..7248403 976..861 580 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:49:27 has no hits.

BO04962.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:28 Download gff for BO04962.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 1..963 17..977 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:00 Download gff for BO04962.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 310..1280 10..983 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:21 Download gff for BO04962.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 319..1278 17..978 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:29 Download gff for BO04962.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 310..1280 10..983 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:01 Download gff for BO04962.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 319..1278 17..978 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:01 Download gff for BO04962.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7248284..7248401 863..978 98 <- Minus
3R 7248457..7248591 728..862 100 <- Minus
3R 7248650..7249244 133..727 100 <- Minus
3R 7249305..7249420 17..132 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:21 Download gff for BO04962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3074006..3074123 863..978 98 <- Minus
arm_3R 3074179..3074313 728..862 100 <- Minus
arm_3R 3074372..3074966 133..727 100 <- Minus
arm_3R 3075027..3075142 17..132 100   Minus

BO04962.pep Sequence

Translation from 16 to 994

> BO04962.pep
MQSIGWTLIMKRGCLFSCRKETLNINGSRYTIRERLATGGFSLIDLGENA
STRRSYAIKRITCHSIDDQNIALREIENCRKIDSENVIRVVDYELKGQAD
IVINTTSTLFIVLPYYKHGSLADHLQLRSRKQDHMPEAQILQIFLGVCEG
LKAIHEAMPVPLAHRDLKTANICLSDSFEPIIVDLGSMTEARLQIVGQTD
AQRLQDEAEERSSIVYRAPELFTVKTYCTIDERTDIWSLGCVLYAMCYFN
SPYDPIYERGDSVALAVLSGNINIPEDSIYTEDMHELIKYMLRTDPMERP
FVFSVIERTHDLIQKLEGRLASFLDH

BO04962.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-PB 320 CG1227-PB 1..320 1..320 1657 100 Plus
CG1227-PA 320 CG1227-PA 1..320 1..320 1657 100 Plus
Nak-PC 698 CG10637-PC 47..312 31..307 379 33 Plus
Nak-PE 708 CG10637-PE 47..312 31..307 379 33 Plus
Nak-PD 1488 CG10637-PD 47..312 31..307 379 33 Plus