Clone Sequence Records
BO04962.3prime Sequence
980 bp (907 high quality bases) assembled on 2005-12-02
> BO04962.3prime
ATGGTCTAGAAAGCTTGCCAAGCGACCCTCCAGTTTCTGTATCAGATCGT
GGGTCCTTTCGATAACACTAAACACGAATGGCCGTTCCATTGGATCTGTT
CGCAGCATGTACTTAATTAATTCGTGCATGTCCTCTGTGTAAATTGAATC
CTCTGGAATGTTTATGTTCCCACTGAGCACAGCCAAAGCCACGCTGTCAC
CTCGCTCGTAGATGGGATCGTAGGGTGAATTAAAGTAGCACATTGCATAG
AGCACACAGCCAAGACTCCATATGTCAGTGCGCTCGTCAATTGTGCAATA
TGTTTTCACGGTAAATAACTCTGGAGCCCGGTAGACAATGGAGCTCCTCT
CCTCGGCTTCGTCCTGCAAGCGCTGAGCATCCGTCTGGCCCACAATCTGC
AGTCGGGCTTCTGTCATTGACCCGAGATCCACAATAATTGGCTCAAAAGA
GTCCGACAGGCAGATGTTGGCCGTTTTTAGATCTCGGTGGGCCAGAGGCA
CCGGCATTGCCTCGTGGATGGCCTTCAATCCCTCGCAGACGCCCAGAAAG
ATTTGCAGGATCTGGGCCTCGGGCATGTGGTCCTGTTTCCGCGATCGCAG
CTGAAGGTGGTCCGCAAGAGATCCGTGCTTGTAATAGGGAAGCACAATGA
ACAAGGTGCTCGTTGTGTTTATAACTATGTCCGCCTGGCCCTTCAGCTCG
TAATCCACTACCCGGATCACGTTTTCCGAGTCAATTTTTCGACAGTTTTC
GATTTCTCGCAGAGCTATATTCTGATCATCGATGCTGTGGCAGGTGATGC
GCTTTATCGCATAGCTACGTCGCGTGGAGGCGTTTTCCCCAAGGTCGATT
AGACTGAAGCCCCCCGTCGCCAGCCTTTCGCGGATTGTGTATCGAGATCC
GTTTATGTTCAGGGTCTCCTTTGCGGCACTAAAGAGGCAGCCGCGTTTCA
TGATCAGCGTCCATCCTATACTCTGCATGT
BO04962.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1227-PA | 963 | CG1227-RA | 58..960 | 921..19 | 4515 | 100 | Minus |
CG1227-PA | 963 | CG1227-RA | 1..51 | 978..928 | 255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:13:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1227-RB | 1174 | CG1227-RB | 78..1037 | 978..19 | 4755 | 99.8 | Minus |
CG1227-RA | 1415 | CG1227-RA | 319..1278 | 978..19 | 4755 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7248650..7249245 | 268..863 | 2980 | 100 | Plus |
3R | 32079331 | 3R | 7248456..7248592 | 132..268 | 685 | 100 | Plus |
3R | 32079331 | 3R | 7248288..7248403 | 19..134 | 580 | 100 | Plus |
3R | 32079331 | 3R | 7249304..7249420 | 862..978 | 510 | 95.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 14:13:59 has no hits.
BO04962.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:58 Download gff for
BO04962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-PA | 1..963 | 18..978 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:32:08 Download gff for
BO04962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-PA | 1..963 | 18..978 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:06:42 Download gff for
BO04962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 317..1283 | 12..980 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:07 Download gff for
BO04962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 317..1283 | 12..980 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:07 Download gff for
BO04962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7249305..7249421 | 863..980 | 97 | | Plus |
3R | 7248283..7248401 | 12..132 | 97 | <- | Plus |
3R | 7248457..7248591 | 133..267 | 100 | <- | Plus |
3R | 7248650..7249244 | 268..862 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:06:42 Download gff for
BO04962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3074005..3074123 | 12..132 | 97 | <- | Plus |
arm_3R | 3074179..3074313 | 133..267 | 100 | <- | Plus |
arm_3R | 3074372..3074966 | 268..862 | 100 | <- | Plus |
arm_3R | 3075027..3075143 | 863..980 | 97 | | Plus |
BO04962.5prime Sequence
842 bp (840 high quality bases) assembled on 2005-11-29
> BO04962.5prime
GAAGTTATCAGTCGACATGCAGAGTATAGGATGGACGCTGATCATGAAAC
GCGGCTGCCTCTTTAGTTGCCGCAAGGAGACCCTGAACATAAACGGATCT
CGATACACAATCCGCGAAAGGCTGGCGACGGGGGGCTTCAGTCTAATCGA
CCTTGGGGAAAACGCCTCCACGCGACGTAGCTATGCGATAAAGCGCATCA
CCTGCCACAGCATCGATGATCAGAATATAGCTCTGCGAGAAATCGAAAAC
TGTCGAAAAATTGACTCGGAAAACGTGATCCGGGTAGTGGATTACGAGCT
GAAGGGCCAGGCGGACATAGTTATAAACACAACGAGCACCTTGTTCATTG
TGCTTCCCTATTACAAGCACGGATCTCTTGCGGACCACCTTCAGCTGCGA
TCGCGGAAACAGGACCACATGCCCGAGGCCCAGATCCTGCAAATCTTTCT
GGGCGTCTGCGAGGGATTGAAGGCCATCCACGAGGCAATGCCGGTGCCTC
TGGCCCACCGAGATCTAAAAACGGCCAACATCTGCCTGTCGGACTCTTTT
GAGCCAATTATTGTGGATCTCGGGTCAATGACAGAAGCCCGACTGCAGAT
TGTGGGCCAGACGGATGCTCAGCGCTTGCAGGACGAAGCCGAGGAGAGGA
GCTCCATTGTCTACCGGGCTCCAGAGTTATTTACCGTGAAAACATATTGC
ACAATTGACGAGCGCACTGACATATGGAGTCTTGGCTGTGTGCTCTATGC
AATGTGCTACTTTAATTCACCCTACGATCCCATCTACGAGCGAGGTGACA
GCGTGGCTTTGGCTGTGCTCAGTGGGAACATAAACATTCCAG
BO04962.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1227-PA | 963 | CG1227-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1227-RB | 1174 | CG1227-RB | 78..903 | 17..842 | 4130 | 100 | Plus |
CG1227-RA | 1415 | CG1227-RA | 319..1144 | 17..842 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:44:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7248650..7249245 | 727..132 | 2980 | 100 | Minus |
3R | 32079331 | 3R | 7249304..7249420 | 133..17 | 585 | 100 | Minus |
3R | 32079331 | 3R | 7248477..7248592 | 842..727 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:44:38 has no hits.
BO04962.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:13:59 Download gff for
BO04962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:32:09 Download gff for
BO04962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:35:10 Download gff for
BO04962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 313..1144 | 10..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:30 Download gff for
BO04962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 313..1144 | 10..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:30 Download gff for
BO04962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7248477..7248591 | 728..842 | 100 | <- | Minus |
3R | 7248650..7249244 | 133..727 | 100 | <- | Minus |
3R | 7249305..7249426 | 10..132 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:35:10 Download gff for
BO04962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3074199..3074313 | 728..842 | 100 | <- | Minus |
arm_3R | 3074372..3074966 | 133..727 | 100 | <- | Minus |
arm_3R | 3075027..3075148 | 10..132 | 96 | | Minus |
BO04962.complete Sequence
994 bp (994 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629933
> BO04962.complete
GAAGTTATCAGTCGACATGCAGAGTATAGGATGGACGCTGATCATGAAAC
GCGGCTGCCTCTTTAGTTGCCGCAAGGAGACCCTGAACATAAACGGATCT
CGATACACAATCCGCGAAAGGCTGGCGACGGGGGGCTTCAGTCTAATCGA
CCTTGGGGAAAACGCCTCCACGCGACGTAGCTATGCGATAAAGCGCATCA
CCTGCCACAGCATCGATGATCAGAATATAGCTCTGCGAGAAATCGAAAAC
TGTCGAAAAATTGACTCGGAAAACGTGATCCGGGTAGTGGATTACGAGCT
GAAGGGCCAGGCGGACATAGTTATAAACACAACGAGCACCTTGTTCATTG
TGCTTCCCTATTACAAGCACGGATCTCTTGCGGACCACCTTCAGCTGCGA
TCGCGGAAACAGGACCACATGCCCGAGGCCCAGATCCTGCAAATCTTTCT
GGGCGTCTGCGAGGGATTGAAGGCCATCCACGAGGCAATGCCGGTGCCTC
TGGCCCACCGAGATCTAAAAACGGCCAACATCTGCCTGTCGGACTCTTTT
GAGCCAATTATTGTGGATCTCGGGTCAATGACAGAAGCCCGACTGCAGAT
TGTGGGCCAGACGGATGCTCAGCGCTTGCAGGACGAAGCCGAGGAGAGGA
GCTCCATTGTCTACCGGGCTCCAGAGTTATTTACCGTGAAAACATATTGC
ACAATTGACGAGCGCACTGACATATGGAGTCTTGGCTGTGTGCTCTATGC
AATGTGCTACTTTAATTCACCCTACGATCCCATCTACGAGCGAGGTGACA
GCGTGGCTTTGGCTGTGCTCAGTGGGAACATAAACATTCCAGAGGATTCA
ATTTACACAGAGGACATGCACGAATTAATTAAGTACATGCTGCGAACAGA
TCCAATGGAACGGCCATTCGTGTTTAGTGTTATCGAAAGGACCCACGATC
TGATACAGAAACTGGAGGGTCGCTTGGCAAGCTTTCTAGACCAT
BO04962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1227-RB | 963 | CG1227-PB | 1..960 | 17..976 | 4800 | 100 | Plus |
CG1227-RA | 963 | CG1227-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:49:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1227-RB | 1174 | CG1227-RB | 78..1037 | 17..976 | 4800 | 100 | Plus |
CG1227-RA | 1415 | CG1227-RA | 319..1278 | 17..976 | 4800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:49:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7248650..7249245 | 727..132 | 2980 | 100 | Minus |
3R | 32079331 | 3R | 7248456..7248592 | 863..727 | 685 | 100 | Minus |
3R | 32079331 | 3R | 7249304..7249420 | 133..17 | 585 | 100 | Minus |
3R | 32079331 | 3R | 7248288..7248403 | 976..861 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:49:27 has no hits.
BO04962.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:28 Download gff for
BO04962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 1..963 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:00 Download gff for
BO04962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 310..1280 | 10..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:21 Download gff for
BO04962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 319..1278 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:29 Download gff for
BO04962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 310..1280 | 10..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:01 Download gff for
BO04962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 319..1278 | 17..978 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:01 Download gff for
BO04962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7248284..7248401 | 863..978 | 98 | <- | Minus |
3R | 7248457..7248591 | 728..862 | 100 | <- | Minus |
3R | 7248650..7249244 | 133..727 | 100 | <- | Minus |
3R | 7249305..7249420 | 17..132 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:21 Download gff for
BO04962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3074006..3074123 | 863..978 | 98 | <- | Minus |
arm_3R | 3074179..3074313 | 728..862 | 100 | <- | Minus |
arm_3R | 3074372..3074966 | 133..727 | 100 | <- | Minus |
arm_3R | 3075027..3075142 | 17..132 | 100 | | Minus |
BO04962.pep Sequence
Translation from 16 to 994
> BO04962.pep
MQSIGWTLIMKRGCLFSCRKETLNINGSRYTIRERLATGGFSLIDLGENA
STRRSYAIKRITCHSIDDQNIALREIENCRKIDSENVIRVVDYELKGQAD
IVINTTSTLFIVLPYYKHGSLADHLQLRSRKQDHMPEAQILQIFLGVCEG
LKAIHEAMPVPLAHRDLKTANICLSDSFEPIIVDLGSMTEARLQIVGQTD
AQRLQDEAEERSSIVYRAPELFTVKTYCTIDERTDIWSLGCVLYAMCYFN
SPYDPIYERGDSVALAVLSGNINIPEDSIYTEDMHELIKYMLRTDPMERP
FVFSVIERTHDLIQKLEGRLASFLDH
BO04962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1227-PB | 320 | CG1227-PB | 1..320 | 1..320 | 1657 | 100 | Plus |
CG1227-PA | 320 | CG1227-PA | 1..320 | 1..320 | 1657 | 100 | Plus |
Nak-PC | 698 | CG10637-PC | 47..312 | 31..307 | 379 | 33 | Plus |
Nak-PE | 708 | CG10637-PE | 47..312 | 31..307 | 379 | 33 | Plus |
Nak-PD | 1488 | CG10637-PD | 47..312 | 31..307 | 379 | 33 | Plus |