Clone Sequence Records
BO04976.3prime Sequence
977 bp (872 high quality bases) assembled on 2005-12-02
> BO04976.3prime
ATGGTCTAGAAAGCTTGCCTTTCCCGCCTTGGCCTTCTTCTCGTTCTCGG
AGGTGATCTTGTTCTTCAGATGATCCTTGTAGTCCAGAATGCCGCCCTTC
CACTTGGTTACCGTCTCCTTTTCGCATACCCAAATCTCCTCAGCCACCTG
ATTAATCAGACGGAAATCGTGACTAACTAGCACCATGCCGCCATCGAAAT
CGTTGATCGCATCCGCGAGCGCATCGATTGTCTCCATGTCCAAGTGATTG
GTGGGTTCGTCAAGTAGCAGAAGATGGGGCACCTGCCAGGCGAGCCAGGC
GAACACCACGCGGCACCGCTGGCCATCGGAGAGCTGGCGAATCGGACACA
CCTGCTGGCGACCAGTGAGGCCGTAGCGACCAATAATCTTGCGCATCTCC
TCCTTCTCCTTGACGTCAGGGAAGGCACGCATCATGTACTCTAGCGGACT
GGCATCCAAATCGAGCAGCTCGTGCAGATGCTGGTGGTAGCGGGCGATGC
GCAGATGGGAGTTCTTGCGGATCATGCCGGAGGTGGGCACCAGATCGCCA
TAAAGCAGCTTCAGCAACGTGGACTTGCCAGCTCCGTTGGGTCCAACCAA
AGCGAGACGTGTGTCTAGATCAATTCCGAACTCCAGATTTTTGTAGATCC
ACGGTGTCTCATCGTTGTATCGGAAATTCACGTTCTGAACCATAATCACG
GGTGGCGGCACCTTGCCGCACGATGGGAAGTAAAAGTTGAGCACCTTATC
GTCGGACACCTTCTCTGTGAGTCCCTGAGCAACCATCTTGGCCAGCGTCT
TCTCCTTGGACTGCGCCTGTCGCGCCAACTTGGCGGAACCGTGACCGAAT
CGAGCAATGTAGTTCTTCATGTGCGAAATCTGGTCCTGTTCCCAGTTGTA
CTGCTTCATCTGGTTTTCCAGCAGTTCCATGCGTGTGCGCACAAAGGCCT
CATAGTTACCCGTATAGTACTTGAGTC
BO04976.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-PB | 1836 | CG9281-RB | 875..1833 | 977..19 | 4795 | 100 | Minus |
| CG9281-PC | 1836 | CG9281-RC | 875..1833 | 977..19 | 4795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:42:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-RD | 2565 | CG9281-RD | 1117..2075 | 977..19 | 4795 | 100 | Minus |
| CG9281-RC | 3033 | CG9281-RC | 945..1903 | 977..19 | 4795 | 100 | Minus |
| CG9281-RB | 3205 | CG9281-RB | 1117..2075 | 977..19 | 4795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:42:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15707127..15707667 | 146..686 | 2705 | 100 | Plus |
| X | 23542271 | X | 15707733..15708025 | 685..977 | 1465 | 100 | Plus |
| X | 23542271 | X | 15706936..15707067 | 19..150 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:42:08 has no hits.
BO04976.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:14:16 Download gff for
BO04976.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-PB | 875..1836 | 18..977 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:32:32 Download gff for
BO04976.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-PC | 875..1836 | 18..977 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:44:11 Download gff for
BO04976.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 1117..2075 | 19..977 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:09 Download gff for
BO04976.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 1117..2075 | 19..977 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:09 Download gff for
BO04976.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15707733..15708025 | 685..977 | 100 | | Plus |
| X | 15706936..15707064 | 19..147 | 100 | <- | Plus |
| X | 15707129..15707665 | 148..684 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:44:11 Download gff for
BO04976.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15600969..15601097 | 19..147 | 100 | <- | Plus |
| arm_X | 15601162..15601698 | 148..684 | 100 | <- | Plus |
| arm_X | 15601766..15602058 | 685..977 | 100 | | Plus |
BO04976.5prime Sequence
963 bp (846 high quality bases) assembled on 2005-12-02
> BO04976.5prime
GAAGTTATCAGTCGACATGTCATCCGCCGCGAAGAAACGGGAGGCGCAGA
AGAAGAAGGATGCGCGCAACAAGAAGATCCAACAGATACCCTCCACCAAG
AAGGCCAATGGTGTCCCGGAACGCGAACTGACCGAGGAGGAGAAGCTGTG
CGCCAAGCTGGAGGAGGAGGCCCGGATCAGTGCGGAGGCCCGATCCTGCA
CCGGATCGCTGGCGGTGCATCCGCGTTCCCGTGACGTCAAGATCGCCAAC
TTTTCGATCACGTTCTTTGGCTCCGAGCTGCTGCAGGACACCATGCTGGA
GTTGAATTGCGGGCGTCGCTACGGTCTGATTGGCCTGAACGGATGCGGTA
AGTCCTCGCTGCTGGCCGTGCTTGGCGGCAGGGAGGTGCCGGTACCGCCG
CACATCGACATCTTCCACTTGACGCGCGAAATCCCGGCCAGTTCAAAGAG
TGCGCTGCAGTGCGTCATGGAGGTGGATGAGGAGCGCATTAAGCTAGAGA
AGCTGGCCGAAGAGCTGGCCATGAGCGAGGAAGATGATGCTCAGGAGCAG
CTGATCGACATCTACGAGCGGCTGGACGATATGTCCGCCGATCTGGCAGA
GGTCAAGGCGGCCCGCATCCTTCACGGTCTTGGCTTCGACAAGGCCATGC
AACAGAAACAGGCCAAGGACTTCTCAGGTGGTTGGCGTATGCGTATCGCC
TTGGCCCGCGCGCTGTTTGTGAAGCCCCATCTGCTGTTGCTGGACGAGCC
GACGAATCACTTGGATTTGGACGCCTGTGTGTGGCTGGAGGAGGAGCTTA
AGACATACAAGCGAATCCTGGTGCTCATCTCGCACTCGCAGGATTTCCTC
AACGGTGTCTGCACAAACATCATTCACCTGACGGGCAAGCGACTCAAGTA
CTATACGGGTAACTATGAGGCCTTGGTGCGCACACGCATGGGACTGCTGG
GAAAACAGATGAA
BO04976.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-PB | 1836 | CG9281-RB | 1..947 | 17..963 | 4635 | 99.5 | Plus |
| CG9281-PC | 1836 | CG9281-RC | 1..947 | 17..963 | 4635 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-RD | 2565 | CG9281-RD | 243..1189 | 17..963 | 4675 | 99.6 | Plus |
| CG9281-RC | 3033 | CG9281-RC | 71..1017 | 17..963 | 4675 | 99.6 | Plus |
| CG9281-RB | 3205 | CG9281-RB | 243..1189 | 17..963 | 4675 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15708311..15708974 | 680..17 | 3320 | 100 | Minus |
| X | 23542271 | X | 15707953..15708241 | 963..675 | 1385 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:14:41 has no hits.
BO04976.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:14:17 Download gff for
BO04976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-PB | 1..945 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:32:34 Download gff for
BO04976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-PC | 1..945 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:56 Download gff for
BO04976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..1189 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:17:06 Download gff for
BO04976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..1189 | 17..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:17:06 Download gff for
BO04976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15707953..15708238 | 678..963 | 98 | <- | Minus |
| X | 15708314..15708974 | 17..677 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:56 Download gff for
BO04976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15601986..15602271 | 678..963 | 98 | <- | Minus |
| arm_X | 15602347..15603007 | 17..677 | 100 | | Minus |
BO04976.complete Sequence
1867 bp (1867 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ638626
> BO04976.complete
GAAGTTATCAGTCGACATGTCATCCGCCGCGAAGAAACGGGAGGCGCAGA
AGAAGAAGGATGCGCGCAACAAGAAGATCCAACAGATACCCTCCACCAAG
AAGGCCAATGGTGTCCCGGAACGCGAACTGACCGAGGAGGAGAAGCTGTG
CGCCAAGCTGGAGGAGGAGGCCCGGATCAGTGCGGAGGCCCGATCCTGCA
CCGGATCGCTGGCGGTGCATCCGCGTTCCCGTGACGTCAAGATCGCCAAC
TTTTCGATCACGTTCTTTGGCTCCGAGCTGCTGCAGGACACCATGCTGGA
GTTGAATTGCGGGCGTCGCTACGGTCTGATTGGCCTGAACGGATGCGGTA
AGTCCTCGCTGCTGGCCGTGCTTGGCGGCAGGGAGGTGCCGGTACCGCCG
CACATCGACATCTTCCACTTGACGCGCGAAATCCCGGCCAGTTCAAAGAG
TGCGCTGCAGTGCGTCATGGAGGTGGATGAGGAGCGCATTAAGCTAGAGA
AGCTGGCCGAAGAGCTGGCCATGAGCGAGGAAGATGATGCTCAGGAGCAG
CTGATCGACATCTACGAGCGGCTGGACGATATGTCCGCCGATCTGGCAGA
GGTCAAGGCGGCCCGCATCCTTCACGGTCTTGGCTTCGACAAGGCCATGC
AACAGAAACAGGCCAAGGACTTCTCAGGTGGTTGGCGTATGCGTATCGCC
TTGGCCCGCGCGCTGTTTGTGAAGCCCCATCTGCTGTTGCTGGACGAGCC
GACGAATCACTTGGATTTGGACGCCTGTGTGTGGCTGGAGGAGGAGCTTA
AGACATACAAGCGAATCCTGGTGCTCATCTCGCACTCGCAGGATTTCCTC
AACGGTGTCTGCACAAACATCATTCACCTGACGGGCAAGCGACTCAAGTA
CTATACGGGTAACTATGAGGCCTTTGTGCGCACACGCATGGAACTGCTGG
AAAACCAGATGAAGCAGTACAACTGGGAACAGGACCAGATTTCGCACATG
AAGAACTACATTGCTCGATTCGGTCACGGTTCCGCCAAGTTGGCGCGACA
GGCGCAGTCCAAGGAGAAGACGCTGGCCAAGATGGTTGCTCAGGGACTCA
CAGAGAAGGTGTCCGACGATAAGGTGCTCAACTTTTACTTCCCATCGTGC
GGCAAGGTGCCGCCACCCGTGATTATGGTTCAGAACGTGAATTTCCGATA
CAACGATGAGACACCGTGGATCTACAAAAATCTGGAGTTCGGAATTGATC
TAGACACACGTCTCGCTTTGGTTGGACCCAACGGAGCTGGCAAGTCCACG
TTGCTGAAGCTGCTTTATGGCGATCTGGTGCCCACCTCCGGCATGATCCG
CAAGAACTCCCATCTGCGCATCGCCCGCTACCACCAGCATCTGCACGAGC
TGCTCGATTTGGATGCCAGTCCGCTAGAGTACATGATGCGTGCCTTCCCT
GACGTCAAGGAGAAGGAGGAGATGCGCAAGATTATTGGTCGCTACGGCCT
CACTGGTCGCCAGCAGGTGTGTCCGATTCGCCAGCTCTCCGATGGCCAGC
GGTGCCGCGTGGTGTTCGCCTGGCTCGCCTGGCAGGTGCCCCATCTTCTG
CTACTTGACGAACCCACCAATCACTTGGACATGGAGACAATCGATGCGCT
CGCGGATGCGATCAACGATTTCGATGGCGGCATGGTGCTAGTTAGTCACG
ATTTCCGTCTGATTAATCAGGTGGCTGAGGAGATTTGGGTATGCGAAAAG
GAGACGGTAACCAAGTGGAAGGGCGGCATTCTGGACTACAAGGATCATCT
GAAGAACAAGATCACCTCCGAGAACGAGAAGAAGGCCAAGGCGGGAAAGG
CAAGCTTTCTAGACCAT
BO04976.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-RD | 1836 | CG9281-PD | 1..1833 | 17..1849 | 9165 | 100 | Plus |
| CG9281-RC | 1836 | CG9281-PC | 1..1833 | 17..1849 | 9165 | 100 | Plus |
| CG9281-RB | 1836 | CG9281-PB | 1..1833 | 17..1849 | 9165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-RD | 2565 | CG9281-RD | 243..2075 | 17..1849 | 9165 | 100 | Plus |
| CG9281-RC | 3033 | CG9281-RC | 71..1903 | 17..1849 | 9165 | 100 | Plus |
| CG9281-RB | 3205 | CG9281-RB | 243..2075 | 17..1849 | 9165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15708311..15708974 | 680..17 | 3320 | 100 | Minus |
| X | 23542271 | X | 15707127..15707667 | 1722..1182 | 2705 | 100 | Minus |
| X | 23542271 | X | 15707733..15708241 | 1183..675 | 2545 | 100 | Minus |
| X | 23542271 | X | 15706936..15707067 | 1849..1718 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:09:24 has no hits.
BO04976.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:58 Download gff for
BO04976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RC | 1..1836 | 17..1850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:02 Download gff for
BO04976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RC | 71..1903 | 17..1849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:57 Download gff for
BO04976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..2075 | 17..1851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:58 Download gff for
BO04976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RC | 71..1903 | 17..1849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:06 Download gff for
BO04976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..2075 | 17..1851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:06 Download gff for
BO04976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15706934..15707064 | 1721..1851 | 98 | <- | Minus |
| X | 15707129..15707665 | 1184..1720 | 100 | <- | Minus |
| X | 15707733..15708238 | 678..1183 | 100 | <- | Minus |
| X | 15708314..15708974 | 17..677 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:57 Download gff for
BO04976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15600967..15601097 | 1721..1851 | 98 | <- | Minus |
| arm_X | 15601162..15601698 | 1184..1720 | 100 | <- | Minus |
| arm_X | 15601766..15602271 | 678..1183 | 100 | <- | Minus |
| arm_X | 15602347..15603007 | 17..677 | 100 | | Minus |
BO04976.pep Sequence
Translation from 16 to 1867
> BO04976.pep
MSSAAKKREAQKKKDARNKKIQQIPSTKKANGVPERELTEEEKLCAKLEE
EARISAEARSCTGSLAVHPRSRDVKIANFSITFFGSELLQDTMLELNCGR
RYGLIGLNGCGKSSLLAVLGGREVPVPPHIDIFHLTREIPASSKSALQCV
MEVDEERIKLEKLAEELAMSEEDDAQEQLIDIYERLDDMSADLAEVKAAR
ILHGLGFDKAMQQKQAKDFSGGWRMRIALARALFVKPHLLLLDEPTNHLD
LDACVWLEEELKTYKRILVLISHSQDFLNGVCTNIIHLTGKRLKYYTGNY
EAFVRTRMELLENQMKQYNWEQDQISHMKNYIARFGHGSAKLARQAQSKE
KTLAKMVAQGLTEKVSDDKVLNFYFPSCGKVPPPVIMVQNVNFRYNDETP
WIYKNLEFGIDLDTRLALVGPNGAGKSTLLKLLYGDLVPTSGMIRKNSHL
RIARYHQHLHELLDLDASPLEYMMRAFPDVKEKEEMRKIIGRYGLTGRQQ
VCPIRQLSDGQRCRVVFAWLAWQVPHLLLLDEPTNHLDMETIDALADAIN
DFDGGMVLVSHDFRLINQVAEEIWVCEKETVTKWKGGILDYKDHLKNKIT
SENEKKAKAGKASFLDH
BO04976.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-PD | 611 | CG9281-PD | 1..611 | 1..611 | 3173 | 100 | Plus |
| CG9281-PC | 611 | CG9281-PC | 1..611 | 1..611 | 3173 | 100 | Plus |
| CG9281-PB | 611 | CG9281-PB | 1..611 | 1..611 | 3173 | 100 | Plus |
| CG1703-PB | 901 | CG1703-PB | 287..884 | 2..599 | 1059 | 37.1 | Plus |
| CG9330-PA | 708 | CG9330-PA | 91..708 | 9..603 | 1055 | 38.5 | Plus |
