Clone Sequence Records
BO04986.3prime Sequence
886 bp (859 high quality bases) assembled on 2005-12-02
> BO04986.3prime
ATGGTCTAGAAAGCTTGCGAGCCGAACTTCGGGCTTGGCCCAACCGCCAA
AGGCTCGCTCCAATTCCTCGGCAACGGCCAAACAAAGTCGATCCTGATTG
AAGTTGGCGATGATTTGGACACCCAGTGGCAGACCCTCGCTGCCCAGCTT
GCCCAGCGGCACAGCGGTGGCCGGGAAGCCCAGCACATTGACAATACCAG
TGTAGGCAAAGTTAATGGGTCGCGTAATGGGCTCATTGTGGTATGGAGCC
ACCGTGGGATGCGTGGGATAGATCAGCACACCATTATCGCCCAGCAGGCT
TTGCAACTCCTCCCTCAGCTCATTTCGTTTGCGCACCAGATGATCGTACT
TGGGAGATCCGTGCTTGCACTGTGCACTATCCATGATAGCTGTCGACAGG
CCAATGAATGTGTGCTTGGAAGCGCCGAAGAACCACTTGAAGAGCTCCAG
GTACGTGTTGATGTCATGATTCAGGTTGCCTAGCTGGTAGGCGAATCCAT
GGCCACTGTCGTCGCGCATGTTGGCAAACCAAATGGCCGCCGACTGCCGG
AAGTGGGGCAGCTGGATGCGCTCCACTTTCTGATTGCCGAACTTCTCTCT
CAAGTGCTGTGCCACGCGGTTCATGGCCTCTCTTAAGTCTGGATCAACGG
CGGAAACCAAGCGGCCGCCGCCATCGGACTCTTGGTAGAAGAACTTCATT
TTGGTTAGGTCCACATCCTCGTCCAGATTAAGCAGGGCCGCCTTCTCGCC
AGCCATAATCTTTAGCATGGGTCGCAGGTCCTCGGCAAATCGTGACATAG
GTCCCAGGCCGAGGAAGGAGTTCTGCTCGGCACTGAAGGGCGCTGGGAAC
TGACCGACATTGGAGACGACCAACTTGCTGGGCTTG
BO04986.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-PD | 1590 | CG8839-RD | 720..1587 | 886..19 | 4340 | 100 | Minus |
| CG8839-PC | 1590 | CG8839-RC | 720..1587 | 886..19 | 4340 | 100 | Minus |
| CG8839-PA | 1590 | CG8839-RA | 720..1587 | 886..19 | 4340 | 100 | Minus |
| CG8839-PE | 1590 | CG8839-RE | 720..1587 | 886..19 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-RE | 2071 | CG8839-RE | 918..1785 | 886..19 | 4340 | 100 | Minus |
| CG8839-RA | 2082 | CG8839-RA | 929..1796 | 886..19 | 4340 | 100 | Minus |
| CG8839-RC | 2143 | CG8839-RC | 990..1857 | 886..19 | 4340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12339896..12340506 | 19..629 | 3055 | 100 | Plus |
| 2R | 25286936 | 2R | 12340565..12340824 | 627..886 | 1300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:16:13 has no hits.
BO04986.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:14:30 Download gff for
BO04986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-PC | 720..1590 | 18..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:32:53 Download gff for
BO04986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-PE | 720..1590 | 18..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:45 Download gff for
BO04986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 990..1857 | 19..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:37:53 Download gff for
BO04986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 990..1857 | 19..886 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:37:53 Download gff for
BO04986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12339896..12340504 | 19..627 | 100 | <- | Plus |
| 2R | 12340566..12340824 | 628..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:45 Download gff for
BO04986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8227401..8228009 | 19..627 | 100 | <- | Plus |
| arm_2R | 8228071..8228329 | 628..886 | 100 | | Plus |
BO04986.5prime Sequence
936 bp (813 high quality bases) assembled on 2005-12-02
> BO04986.5prime
GAAGTTATCAGTCGACATGGCGAAGAGCGTGCCACTGACCCAGGCCATTG
GTGGTTACATTTTCGGCATTCTCCAGGCCTGCATTCGCTTTGTTTTCCGG
CTGATCTATGGCCAAAAGGGTGAGAGTGTTCCACCGATCACAGATGCCAT
TCTCTTGGAGTCCGCCACATCGTTGGCACGGAAAATCCGCAAACAGGAGC
TGAGCAGCGTCCAGGTCTTGGAATCATTTATCCGGCGCATCAAAGAGGTG
AATCCCATTCTCAACTGTGTCGTGGATGAACGTTACGATCAAGCTCTCAA
GGAGGCAGCCGAAGCAGATGCCCTGATCAAGTCTGGACAATACAGCACGG
AGGAGTTGGAGAAGGAGAAGCCCTTCCTGGGCGTGCCCATTACCACCAAG
GATTGCATATCCGTCAAGGGCATGCTGCACACAGCTGGACTCTTCGAACG
TCGGGATGTGCGTGCTGCGCGGGATGCGGACGCTATGGCCTTGATGCGCA
AGGCGGGAGCCATTCCCATAGCCCTCACAAATGTTTCCGAGGTGTGCATG
TGGTGGGAGAGCAACAATACGGTGCACGGCAGGACAAGGAATGCCTACGA
CACTAACCGCATTGTCGGTGGCTCCAGCGGTGGCGAGGGCTGCATACAGT
CGGCGGCTGCCTCCGCCTTTGGCTTGGGCTCCGACATTGGCGGCTCCATT
CGCATGCCAGCCTTTTTCAATGGCATCTTTGGCCACAAGCCCAGCAAGTT
GGTCGTCTCCAATGTCGGTCAGTTCCCAGCGCCCTTCAGTGCCGAGCAGA
ACTCCTTCCTCGGCCTGGGACCTATGTCACGATTTGCCGAGGACCTGCGA
CCCATGCTAAAGATTATGGCTGGCGAGAANGCGGCCCTGCTTAATCTGGG
ACGAGGATGTGGGACTAACCAAAATGAAGTTCTTCT
BO04986.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-PD | 1590 | CG8839-RD | 1..883 | 17..899 | 4396 | 99.8 | Plus |
| CG8839-PC | 1590 | CG8839-RC | 1..883 | 17..899 | 4396 | 99.8 | Plus |
| CG8839-PA | 1590 | CG8839-RA | 1..883 | 17..899 | 4396 | 99.8 | Plus |
| CG8839-PE | 1590 | CG8839-RE | 1..883 | 17..899 | 4396 | 99.8 | Plus |
| CG8839-PD | 1590 | CG8839-RD | 882..919 | 899..936 | 140 | 94.7 | Plus |
| CG8839-PC | 1590 | CG8839-RC | 882..919 | 899..936 | 140 | 94.7 | Plus |
| CG8839-PA | 1590 | CG8839-RA | 882..919 | 899..936 | 140 | 94.7 | Plus |
| CG8839-PE | 1590 | CG8839-RE | 882..919 | 899..936 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-RE | 2071 | CG8839-RE | 199..1117 | 17..936 | 4534 | 99.6 | Plus |
| CG8839-RA | 2082 | CG8839-RA | 210..1128 | 17..936 | 4534 | 99.6 | Plus |
| CG8839-RC | 2143 | CG8839-RC | 271..1189 | 17..936 | 4534 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12340625..12341141 | 936..419 | 2499 | 99.2 | Minus |
| 2R | 25286936 | 2R | 12341209..12341431 | 420..198 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 12341483..12341670 | 204..17 | 925 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:33:04 has no hits.
BO04986.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:14:31 Download gff for
BO04986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-PC | 1..919 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:32:54 Download gff for
BO04986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-PA | 1..919 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:18:27 Download gff for
BO04986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 265..1189 | 9..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:37:17 Download gff for
BO04986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 265..1189 | 9..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:37:17 Download gff for
BO04986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12340625..12341140 | 420..936 | 99 | <- | Minus |
| 2R | 12341210..12341429 | 200..419 | 100 | <- | Minus |
| 2R | 12341488..12341676 | 9..199 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:18:27 Download gff for
BO04986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8228130..8228645 | 420..936 | 99 | <- | Minus |
| arm_2R | 8228715..8228934 | 200..419 | 100 | <- | Minus |
| arm_2R | 8228993..8229181 | 9..199 | 97 | | Minus |
BO04986.complete Sequence
1621 bp (1621 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629934
> BO04986.complete
GAAGTTATCAGTCGACATGGCGAAGAGCGTGCCACTGACCCAGGCCATTG
GTGGTTACATTTTCGGCATTCTCCAGGCCTGCATTCGCTTTGTTTTCCGG
CTGATCTATGGCCAAAAGGGTGAGAGTGTTCCACCGATCACAGATGCCAT
TCTCTTGGAGTCCGCCACATCGTTGGCACGGAAAATCCGCAAACAGGAGC
TGAGCAGCGTCCAGGTCTTGGAATCATTTATCCGGCGCATCAAAGAGGTG
AATCCCATTCTCAACTGTGTCGTGGATGAACGTTACGATCAAGCTCTCAA
GGAGGCAGCCGAAGCAGATGCCCTGATCAAGTCTGGACAATACAGCACGG
AGGAGTTGGAGAAGGAGAAGCCCTTCCTGGGCGTGCCCATTACCACCAAG
GATTGCATATCCGTCAAGGGCATGCTGCACACAGCTGGACTCTTCGAACG
TCGGGATGTGCGTGCTGCGCGGGATGCGGACGCTATGGCCTTGATGCGCA
AGGCGGGAGCCATTCCCATAGCCCTCACAAATGTTTCCGAGGTGTGCATG
TGGTGGGAGAGCAACAATACGGTGCACGGCAGGACAAGGAATGCCTACGA
CACTAACCGCATTGTCGGTGGCTCCAGCGGTGGCGAGGGCTGCATACAGT
CGGCGGCTGCCTCCGCCTTTGGCTTGGGCTCCGACATTGGCGGCTCCATT
CGCATGCCAGCCTTTTTCAATGGCATCTTTGGCCACAAGCCCAGCAAGTT
GGTCGTCTCCAATGTCGGTCAGTTCCCAGCGCCCTTCAGTGCCGAGCAGA
ACTCCTTCCTCGGCCTGGGACCTATGTCACGATTTGCCGAGGACCTGCGA
CCCATGCTAAAGATTATGGCTGGCGAGAAGGCGGCCCTGCTTAATCTGGA
CGAGGATGTGGACCTAACCAAAATGAAGTTCTTCTACCAAGAGTCCGATG
GCGGCGGCCGCTTGGTTTCCGCCGTTGATCCAGACTTAAGAGAGGCCATG
AACCGCGTGGCACAGCACTTGAGAGAGAAGTTCGGCAATCAGAAAGTGGA
GCGCATCCAGCTGCCCCACTTCCGGCAGTCGGCGGCCATTTGGTTTGCCA
ACATGCGCGACGACAGTGGCCATGGATTCGCCTACCAGCTAGGCAACCTG
AATCATGACATCAACACGTACCTGGAGCTCTTCAAGTGGTTCTTCGGCGC
TTCCAAGCACACATTCATTGGCCTGTCGACAGCTATCATGGATAGTGCAC
AGTGCAAGCACGGATCTCCCAAGTACGATCATCTGGTGCGCAAACGAAAT
GAGCTGAGGGAGGAGTTGCAAAGCCTGCTGGGCGATAATGGTGTGCTGAT
CTATCCCACGCATCCCACGGTGGCTCCATACCACAATGAGCCCATTACGC
GACCCATTAACTTTGCCTACACTGGTATTGTCAATGTGCTGGGCTTCCCG
GCCACCGCTGTGCCGCTGGGCAAGCTGGGCAGCGAGGGTCTGCCACTGGG
TGTCCAAATCATCGCCAACTTCAATCAGGATCGACTTTGTTTGGCCGTTG
CCGAGGAATTGGAGCGAGCCTTTGGCGGTTGGGCCAAGCCCGAAGTTCGG
CTCGCAAGCTTTCTAGACCAT
BO04986.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-RE | 1590 | CG8839-PE | 1..1587 | 17..1603 | 7935 | 100 | Plus |
| CG8839-RA | 1590 | CG8839-PA | 1..1587 | 17..1603 | 7935 | 100 | Plus |
| CG8839-RC | 1590 | CG8839-PC | 1..1587 | 17..1603 | 7935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-RE | 2071 | CG8839-RE | 199..1785 | 17..1603 | 7935 | 100 | Plus |
| CG8839-RA | 2082 | CG8839-RA | 210..1796 | 17..1603 | 7935 | 100 | Plus |
| CG8839-RC | 2143 | CG8839-RC | 271..1857 | 17..1603 | 7935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12339896..12340506 | 1603..993 | 3055 | 100 | Minus |
| 2R | 25286936 | 2R | 12340565..12341141 | 995..419 | 2885 | 100 | Minus |
| 2R | 25286936 | 2R | 12341209..12341431 | 420..198 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 12341483..12341670 | 204..17 | 925 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:47:05 has no hits.
BO04986.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:25 Download gff for
BO04986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RA | 1..1590 | 17..1604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:55 Download gff for
BO04986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RA | 200..1792 | 9..1603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:34 Download gff for
BO04986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 271..1857 | 17..1605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:25 Download gff for
BO04986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RA | 200..1792 | 9..1603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:31 Download gff for
BO04986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 271..1857 | 17..1605 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:31 Download gff for
BO04986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12339894..12340504 | 995..1605 | 99 | <- | Minus |
| 2R | 12340566..12341140 | 420..994 | 100 | <- | Minus |
| 2R | 12341210..12341429 | 200..419 | 100 | <- | Minus |
| 2R | 12341488..12341670 | 17..199 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:34 Download gff for
BO04986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8227399..8228009 | 995..1605 | 99 | <- | Minus |
| arm_2R | 8228071..8228645 | 420..994 | 100 | <- | Minus |
| arm_2R | 8228715..8228934 | 200..419 | 100 | <- | Minus |
| arm_2R | 8228993..8229175 | 17..199 | 100 | | Minus |
BO04986.pep Sequence
Translation from 16 to 1621
> BO04986.pep
MAKSVPLTQAIGGYIFGILQACIRFVFRLIYGQKGESVPPITDAILLESA
TSLARKIRKQELSSVQVLESFIRRIKEVNPILNCVVDERYDQALKEAAEA
DALIKSGQYSTEELEKEKPFLGVPITTKDCISVKGMLHTAGLFERRDVRA
ARDADAMALMRKAGAIPIALTNVSEVCMWWESNNTVHGRTRNAYDTNRIV
GGSSGGEGCIQSAAASAFGLGSDIGGSIRMPAFFNGIFGHKPSKLVVSNV
GQFPAPFSAEQNSFLGLGPMSRFAEDLRPMLKIMAGEKAALLNLDEDVDL
TKMKFFYQESDGGGRLVSAVDPDLREAMNRVAQHLREKFGNQKVERIQLP
HFRQSAAIWFANMRDDSGHGFAYQLGNLNHDINTYLELFKWFFGASKHTF
IGLSTAIMDSAQCKHGSPKYDHLVRKRNELREELQSLLGDNGVLIYPTHP
TVAPYHNEPITRPINFAYTGIVNVLGFPATAVPLGKLGSEGLPLGVQIIA
NFNQDRLCLAVAEELERAFGGWAKPEVRLASFLDH
BO04986.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-PE | 529 | CG8839-PE | 1..529 | 1..529 | 2735 | 100 | Plus |
| CG8839-PA | 529 | CG8839-PA | 1..529 | 1..529 | 2735 | 100 | Plus |
| CG8839-PC | 529 | CG8839-PC | 1..529 | 1..529 | 2735 | 100 | Plus |
| CG8839-PD | 529 | CG8839-PD | 1..529 | 1..529 | 2735 | 100 | Plus |
| CG5112-PA | 523 | CG5112-PA | 23..518 | 23..525 | 873 | 40.2 | Plus |
