Clone Sequence Records
BO05001.3prime Sequence
893 bp (811 high quality bases) assembled on 2005-12-02
> BO05001.3prime
ATGGTCTAGAAAGCTTGCGAGCAGACGAAGGCGGCAATTGGGGGCCCCGC
ACTGGCAGTACAACACCTTGCCGGGCACCACGCCCACCTCGTAATTGTAG
TTCCAAGTCAGCTCGGTGCCGGAGCGGATGTGCGCGGCCGAGAAGAAGGC
AACCCAGGGGAAACGCAGGTCGTGAGTATCCACGAACACGTTCTGCACGA
AGAGATTGGGGCTGCACGAGTGGTTGAAATAGCGTCCAAGGTTGCCCGTT
GTCTTGGCGTCCATGATGTAGGGCGCCTCGTCCTTGCCGAAAAGCCTCCG
CACCGAGTTCTCCCGCACCGTCTCGTCCAGATCAGCATTTGGGTTAAAGT
TGATCACCGCACGCTCCTGCGAGTCCAACTCGCTGCTCTGAGTGGAGCTG
TTCTGCGTGGAGCCGCTTCTGGAAGAGCGCTTGATTTTGCGCTGGTAGTG
ATAGTTTGGCCGGAAGTCGTCATCGTCCTCGGCATCGGGTCCCCCGTTGT
CCTCCTCGGCGTCCGGGTCCGAGTGGTCCACCTCCGACTCGTATCCCTCT
TTTAACTGTTCAGCGACCTCTATGTAATCTAAGTCCGCGAAATACTCGTC
GCCGGCGTCCTGTCCGCCTTCGTTGGCCATCGTCTCCGTGAGCAGATGGC
CGGCGTAAATACAGATGAAAGCACCCTTGGGGATGTCGTTAACGCAGCGC
AAGCCCCATCCACGATTTGAGGTCTTGAACACCTGCAGTTTCATCTCTAG
GGAGAACTGCACCACCCGGTTCAGGCAATTCTTCTTGCACTTGCAGCGCG
AGTTGCACTCGTAGATGCCGGTGGGCACGTGCTCGTGGAGCCGCTTGTAC
TGGTAGCCTATCTCCTCGATGGGTTTCTTCGGGTTACAGTACC
BO05001.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30426-PA | 2529 | CG30426-RA | 1652..2526 | 893..19 | 4375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| egg-RA | 3937 | CG12196-RA | 3000..3874 | 893..19 | 4375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24775859..24776529 | 223..893 | 3355 | 100 | Plus |
| 2R | 25286936 | 2R | 24775597..24775800 | 19..222 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:41:40 has no hits.
BO05001.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:14:51 Download gff for
BO05001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30426-PA | 1652..2529 | 15..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:23 Download gff for
BO05001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30426-PA | 1652..2529 | 15..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:26 Download gff for
BO05001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egg-RA | 3000..3884 | 6..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:23 Download gff for
BO05001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egg-RA | 3000..3884 | 6..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:23 Download gff for
BO05001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24775587..24775800 | 6..222 | 98 | <- | Plus |
| 2R | 24775859..24776529 | 223..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:26 Download gff for
BO05001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20663110..20663323 | 6..222 | 98 | <- | Plus |
| arm_2R | 20663382..20664052 | 223..893 | 100 | | Plus |
BO05001.5prime Sequence
852 bp (786 high quality bases) assembled on 2005-12-02
> BO05001.5prime
GAAGTTATCAGTCGACATGCACTGCGCTTTGTATAACTCGTGTCCGGTGG
CACACAAACATCTGCCCACCCTGGACATTGAACCCAGTGACTATGTGCAT
GAAGTTCCACCTCCTGGCGAAATCGTGCGTCCTCCAATACAGTTGGGAGA
GACATACTACGCTGTTAAGAACAAGGCTATTGCCAGCTGGGTGTCCATAA
AGGTAATCGAGTTTACAGAGAGCACCGCCATCAACGGAAACACGATGAAG
AGCTACAAGATTAGGTACCTCAACACTCCGTACCAGATGATCAAGACAGT
GACGGCCAAGCACATTGCCTACTTCGAACCACCGCCAGTGCGACTGACCA
TTGGTACCCGCGTGATTGCGTACTTCGATGGCACCACTTTGTCGCGGGGC
AAGGATAAGGGCGTGGTGCAGAGCGCCTTTTATCCAGGCATCATCGCTGA
GCCGTTGAAGCAGGCCAATCGCTACCGCTACCTAATATTCTACGACGATG
GGTACACTCAGTACGTTCCGCACCGCGATGTCCGTCTAGTTTGCCAGGCT
TCCGAGAAAGTGTGGGAGGACGTACACGCCGCATCGCGCGATTTCATACA
GAAGTACGTGGAGAAGTACTCCGTGGATCGTCCCATGGTGCAATGCACCC
GGGGACAAAGTATGACCACTGAATCGAACGGGACCTGGCTGTACGCGCGC
GTCATTGACATCGACTGCAGCTTGGTGTTGATGCAGTTTGAGGGCGACAA
AAACCATACGGAGTGGATATACAGGGGTTCATTGCGCTTGGGTCCTGTCT
TCAGGGAAACCCAAAACAATATGAACAGTTCAAGCGCACAGCAGCTGCGT
GT
BO05001.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30426-PA | 2529 | CG30426-RA | 1..836 | 17..852 | 4130 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| egg-RA | 3937 | CG12196-RA | 1349..2184 | 17..852 | 4150 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:46:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24777474..24777973 | 852..353 | 2470 | 99.6 | Minus |
| 2R | 25286936 | 2R | 24778033..24778291 | 355..97 | 1295 | 100 | Minus |
| 2R | 25286936 | 2R | 24778344..24778424 | 97..17 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:46:03 has no hits.
BO05001.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:14:52 Download gff for
BO05001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30426-PA | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:24 Download gff for
BO05001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30426-PA | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:44:20 Download gff for
BO05001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egg-RA | 1349..2184 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:39 Download gff for
BO05001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egg-RA | 1349..2184 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:39 Download gff for
BO05001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24778035..24778290 | 98..353 | 100 | <- | Minus |
| 2R | 24778344..24778424 | 17..97 | 100 | | Minus |
| 2R | 24777474..24777972 | 354..852 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:44:20 Download gff for
BO05001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20664997..20665495 | 354..852 | 99 | <- | Minus |
| arm_2R | 20665558..20665813 | 98..353 | 100 | <- | Minus |
| arm_2R | 20665867..20665947 | 17..97 | 100 | | Minus |
BO05001.complete Sequence
2560 bp assembled on 2008-11-10
> BO05001.complete
GAAGTTATCAGTCGACATGCACTGCGCTTTGTATAACTCGTGTCCGGTGG
CACACAAACATCTGCCCACCCTGGACATTGAACCCAGTGACTATGTGCAT
GAAGTTCCACCTCCTGGCGAAATCGTGCGTCCTCCAATACAGTTGGGAGA
GACATACTACGCTGTTAAGAACAAGGCTATTGCCAGCTGGGTGTCCATAA
AGGTAATCGAGTTTACAGAGAGCACCGCCATCAACGGAAACACGATGAAG
AGCTACAAGATTAGGTACCTCAACACTCCGTACCAGATGATCAAGACAGT
GACGGCCAAGCACATTGCCTACTTCGAACCACCGCCAGTGCGACTGACCA
TTGGTACCCGCGTGATTGCGTACTTCGATGGCACCACTTTGTCGCGGGGC
AAGGATAAGGGCGTGGTGCAGAGCGCCTTTTATCCAGGCATCATCGCTGA
GCCGTTGAAGCAGGCCAATCGCTACCGCTACCTAATATTCTACGACGATG
GGTACACTCAGTACGTTCCGCACCGCGATGTCCGTCTAGTTTGCCAGGCT
TCCGAGAAAGTGTGGGAGGACGTACACGCCGCATCGCGCGATTTCATACA
GAAGTACGTGGAGAAGTACTCCGTGGATCGTCCCATGGTGCAATGCACCC
GGGGACAAAGTATGACCACTGAATCGAACGGGACCTGGCTGTACGCGCGC
GTCATTGACATCGACTGCAGCTTGGTGTTGATGCAGTTTGAGGGCGACAA
AAACCATACGGAGTGGATATACAGGGGTTCATTGCGCTTGGGTCCTGTCT
TCAGGGAAACCCAGAACAATATGAACAGTTCAAGCGCACAGCAGCTGCGT
GTCCCAAGACGCACGGAGCCCTTTATTCGGTACACCAAGGAGATGGAGTC
CAGCAGCAAGGTGAACCAGCAGATGCGTGCCTTTGCCCGCAAGAGCAGCG
CCTCCGCCCAAAATAACGCATTAGCGGCTGCATCTTCGGCAGCAACCCCA
GCCGGAGGACGCACCAATGCAGGAGGTGTCAGCACCAGTAATAGCGCAAG
TGCTGTGCGACACCTAAACAACTCGACAATCTACGTGGACGACGAGAACA
GGCCCAAGGGCCATGTAGTCTACTTTACAGCCAAGCGGAATCTGCCTCCC
AAAATGTACAAGTGCCACGAGTGCAGCCCGAACTGCCTCTTTAAGATCGT
TCACCGTCTGGACAGCTACAGTCCGTTAGCGAAGCCTCTGCTTTCTGGCT
GGGAACGTCTTGTCATGCGGCAGAAGACCAAGAAGTCCGTGGTATACAAG
GGACCTTGTGGCAAAAGCTTGCGCAGCCTGGCCGAAGTTCACAGGTACCT
TCGAGCTACTGAAAATGTGTTGAACGTAGACAATTTTGACTTTACGCCCG
ACCTCAAGTGTCTGGCCGAGTACTCCATTGATCCCTCGATCGTGAAGGAC
ACGGACATTTCAAAGGGGCAGGAGAAGATGGCGATTCCGCTGGTAAACTA
CTACGACAACACCCTGCCGCCCCCATGCACCTACGCGAAGCAGCGCATCC
CTACCGAGGGTGTTCATCTGAATCTGGACGAGGAGTTCCTCTTGTGCTGC
GACTGCGAGGACGACTGCTCGGACAAGTCAAAGTGCGCCTGTTGGCAGCT
AACGGTGGCGGGCGTGCGGTACTGTAACCCGAAGAAACCCATCGAGGAGA
TAGGCTACCAGTACAAGCGGCTCCACGAGCACGTGCCCACCGGCATCTAC
GAGTGCAACTCGCGCTGCAAGTGCAAGAAGAATTGCCTGAACCGGGTGGT
GCAGTTCTCCCTAGAGATGAAACTGCAGGTGTTCAAGACCTCAAATCGTG
GATGGGGCTTGCGCTGCGTTAACGACATCCCCAAGGGTGCTTTCATCTGT
ATTTACGCCGGCCATCTGCTCACGGAGACGATGGCCAACGAAGGCGGACA
GGACGCCGGCGACGAGTATTTCGCGGACTTAGATTACATAGAGGTCGCTG
AACAGTTAAAAGAGGGATACGAGTCGGAGGTGGACCACTCGGACCCGGAC
GCCGAGGAGGACAACGGGGGACCCGATGCCGAGGACGATGACGACTTCCG
GCCAAACTATCACTACCAGCGCAAAATCAAGCGCTCTTCCAGAAGCGGCT
CCACGCAGAACAGCTCCACTCAGAGCAGCGAGTTGGACTCGCAGGAGCGT
GCGGTGATCAACTTTAACCCAAATGCTGATCTGGACGAGACGGTGCGGGA
GAACTCGGTGCGGAGGCTTTTCGGCAAGGACGAGGCGCCCTACATCATGG
ACGCCAAGACAACGGGCAACCTTGGACGCTATTTCAACCACTCGTGCAGC
CCCAATCTCTTCGTGCAGAACGTGTTCGTGGATACTCACGACCTGCGTTT
CCCCTGGGTTGCCTTCTTCTCGGCCGCGCACATCCGCTCCGGCACCGAGC
TGACTTGGAACTACAATTACGAGGTGGGCGTGGTGCCCGGCAAGGTGTTG
TACTGCCAGTGCGGGGCCCCCAATTGCCGCCTTCGTCTGCTCGCAAGCTT
TCTAGACCAT
BO05001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| egg-RA | 3789 | CG12196-PA | 1261..3786 | 17..2542 | 12600 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| egg-RA | 3937 | CG12196-RA | 1349..3874 | 17..2542 | 12600 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24776646..24777408 | 1622..860 | 3800 | 99.9 | Minus |
| 2R | 25286936 | 2R | 24775859..24776576 | 2338..1621 | 3590 | 100 | Minus |
| 2R | 25286936 | 2R | 24777467..24777973 | 859..353 | 2520 | 99.8 | Minus |
| 2R | 25286936 | 2R | 24778033..24778291 | 355..97 | 1295 | 100 | Minus |
| 2R | 25286936 | 2R | 24775597..24775800 | 2542..2339 | 1020 | 100 | Minus |
| 2R | 25286936 | 2R | 24778344..24778424 | 97..17 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:16:44 has no hits.
BO05001.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:08 Download gff for
BO05001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egg-RA | 1362..3897 | 17..2555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:58 Download gff for
BO05001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egg-RA | 1349..3874 | 17..2544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:02 Download gff for
BO05001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egg-RA | 1362..3887 | 17..2544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:24 Download gff for
BO05001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egg-RA | 1349..3874 | 17..2544 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:24 Download gff for
BO05001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24778035..24778290 | 98..353 | 100 | <- | Minus |
| 2R | 24778344..24778424 | 17..97 | 100 | | Minus |
| 2R | 24775595..24775800 | 2339..2544 | 99 | <- | Minus |
| 2R | 24775859..24776575 | 1622..2338 | 100 | <- | Minus |
| 2R | 24776647..24777408 | 860..1621 | 99 | <- | Minus |
| 2R | 24777467..24777972 | 354..859 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:58 Download gff for
BO05001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20663118..20663323 | 2339..2544 | 99 | <- | Minus |
| arm_2R | 20663382..20664098 | 1622..2338 | 100 | <- | Minus |
| arm_2R | 20664170..20664931 | 860..1621 | 99 | <- | Minus |
| arm_2R | 20664990..20665495 | 354..859 | 99 | <- | Minus |
| arm_2R | 20665558..20665813 | 98..353 | 100 | <- | Minus |
| arm_2R | 20665867..20665947 | 17..97 | 100 | | Minus |
BO05001.pep Sequence
Translation from 16 to 2560
> BO05001.pep
MHCALYNSCPVAHKHLPTLDIEPSDYVHEVPPPGEIVRPPIQLGETYYAV
KNKAIASWVSIKVIEFTESTAINGNTMKSYKIRYLNTPYQMIKTVTAKHI
AYFEPPPVRLTIGTRVIAYFDGTTLSRGKDKGVVQSAFYPGIIAEPLKQA
NRYRYLIFYDDGYTQYVPHRDVRLVCQASEKVWEDVHAASRDFIQKYVEK
YSVDRPMVQCTRGQSMTTESNGTWLYARVIDIDCSLVLMQFEGDKNHTEW
IYRGSLRLGPVFRETQNNMNSSSAQQLRVPRRTEPFIRYTKEMESSSKVN
QQMRAFARKSSASAQNNALAAASSAATPAGGRTNAGGVSTSNSASAVRHL
NNSTIYVDDENRPKGHVVYFTAKRNLPPKMYKCHECSPNCLFKIVHRLDS
YSPLAKPLLSGWERLVMRQKTKKSVVYKGPCGKSLRSLAEVHRYLRATEN
VLNVDNFDFTPDLKCLAEYSIDPSIVKDTDISKGQEKMAIPLVNYYDNTL
PPPCTYAKQRIPTEGVHLNLDEEFLLCCDCEDDCSDKSKCACWQLTVAGV
RYCNPKKPIEEIGYQYKRLHEHVPTGIYECNSRCKCKKNCLNRVVQFSLE
MKLQVFKTSNRGWGLRCVNDIPKGAFICIYAGHLLTETMANEGGQDAGDE
YFADLDYIEVAEQLKEGYESEVDHSDPDAEEDNGGPDAEDDDDFRPNYHY
QRKIKRSSRSGSTQNSSTQSSELDSQERAVINFNPNADLDETVRENSVRR
LFGKDEAPYIMDAKTTGNLGRYFNHSCSPNLFVQNVFVDTHDLRFPWVAF
FSAAHIRSGTELTWNYNYEVGVVPGKVLYCQCGAPNCRLRLLASFLDH
BO05001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:27:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| egg-PA | 1262 | CG12196-PA | 421..1262 | 1..842 | 4522 | 100 | Plus |
| Su(var)3-9-PA | 635 | CG43664-PA | 406..537 | 522..657 | 220 | 36.4 | Plus |
| G9a-PA | 1637 | CG2995-PA | 1339..1517 | 480..656 | 167 | 28.8 | Plus |
| G9a-PB | 1657 | CG2995-PB | 1359..1537 | 480..656 | 167 | 28.8 | Plus |
