Clone Sequence Records
BO05002.complete Sequence
2791 bp assembled on 2010-04-12
> BO05002.complete
GAAGTTATCAGTCGACATGGCGCTTTCGTTTCTATCCCAAAACTCCGGTC
TGTTGGATTTACAAAGCATATTCGATCCACAATATACTCATCATCAACAA
CAACAACAACAACTACTACATTTGAGCCACCACCCTCAACATCACATTCA
ACAACACCAAAATCAACAACTACAACAACAAGCGGAGCAAATTCAACAAC
ATCAACAAGAACGCACCCTTTCAACAAAGTTCGATTTGAACCTGTTCAAC
GAACTCGACCAAATGGAATTCAACAATTTAAATCGCAGTCAATATCAGAA
TAATAATAATAACAACAGTATCAGCAATAATCAAAACTCCAACAACAATA
CCAACACCACTAACGGTATCAGTGAAAATCTAAATCAGATCCAAAACCGC
CACTTCATCAGCGGCTACCACCATCAGCATATTGGATCGGACTATGAGCA
AGTGATCAACTTTGTTGACTCGCCGCCAAACTCAGAGGAATCGTGGACAG
ACGGACAGTCGAAGGACTCGCCGGGACCGCAGATCATCGACGTGCAGACC
ATTTACCTGAACAGCGGCTCACGCAAAAGACGAATGGATTGGGACTCTTT
GGACATTGGCCAAAGTGAGAACTCACCCACAGCATCGCAGAGCGGCGACT
TGCCCTCCAAAGTGGCCCATCAGGAGAAGGAAAAGCACAAGCGCGAGAAG
CACTCGGGTCGCAGCAGCTGGAGCGATGATATCGGCTTCGATCTGAACGC
CGAGTTTAACAGCAACTCATATTTGAACAATGAGAACTTCCTGTCGTTCT
CGCCCACGCTGACCACCCTGAAGCAGGAGCCCCAGACGGATCAGATCAAG
CCGAGCCCCAAGGTATCCCTGGATAATGCCTCCGCATCGCCCTCCATCGC
CATTGCCAAGTTGGATGAGGTCCAGAACTCGCCGTCGCAGGCTATTTCTG
GCCAAGACTCGGCTAACGGATCGGGATCGGCCGCAAACGGCAAGCATGAT
GTAAACTCCGGACTCGCCTGCGGGTGTGGCTCTCCTCAGGGTTCACCACT
AGCCAACGCCGAGTATGAGTTGAACGAAAAGGGAAAGCCCCAGCAACTTA
GCGTTTTGGATCCTGCTAAAATCGAGATCGGTTCGGCCAACGGAGCTACC
CATGCCGAGGATCACAAATTTCAGTACATTTTGGCAGCGGCCACTTCGAT
CGCCACCAAGAACAATGAGGAGACTTTGACGTACCTCAACCAAGGCCAGA
GCTACGAAATAAAGCTGAAGAAGATCGGAGACCTGTCCCTCTATAGGGAT
AAGATACTGAAGAGCGTGATCAAGATCTGTTTCCACGAGCGCCGCCTGCA
GTTCATGGAGCGCGAACAGATGCAGCAATGGCAGCAATCCCGCCCAGGCG
AACGCATCATTGAGGTGGACGTACCGCTTTCGTACGGCCTCTGCCACGTG
TCGCAGCCGTTGAGCTCCGGCTCACTGAACACTGTCGAGATCTTCTGGGA
CCCACTGAAGGAGGTCGGCGTCTACATCAAGGTCAACTGCATTTCAACCG
AATTTACCCCAAAGAAGCACGGCGGCGAGAAGGGTGTGCCCTTCCGACTG
CAAATTGAAACCTATATAGAAAACACAAACAGTGCCACCGCCAGCGGCTC
GGGCGGCAGCAACAACAGCGCCATCGCCAGTGGCAGCGGAAGCAGTGGCT
CCGCTGCACCAGCATCTCCGGAACGGACACCCAGTGCCGGCAGCAATGGT
AAACAGGCGGTCCACGCAGCTGCCTGCCAGATCAAGGTTTTTAAGCTAAA
AGGAGCTGATCGCAAACATAAACAGGATCGGGAGAAGATCCAGAAGCGAC
CGCAATCGGAGCAGGAGAAGTTCCAGCCCAGCTACGAGTGTACCATCATG
AACGATATATCCCTGGACCTGGTGATGTCCGCCACCACAACCGGCTGCTA
CAGTCCCGAATATATGAAACTTTGGCCAAACTCGCCCGTGCACATACCCA
AGTACGATGGAATGCTTCCGTTTGCGCCAAGTGCAGCATCGCCGGCTACC
AGCAGCAGCCCCATAGCCATCAACTCGGTGACATCGACCAACTCGCCCAC
CCTCAAGCTGATGGACGCCACAAACATGGTCTCACCGCAGCATGTGCCCG
CTGACATGGACGATTATAGCCAGAACATAATGCCGGAATCGACGCCCTCG
CAAGTGACGCAGTGGCTGACCAATCATCGCCTCACGGCCTATCTTTCAAC
GTTTGCACAGTTCTCGGGAGCGGATATCATGCGCATGTCCAAGGAGGATT
TGATTCAAATTTGCGGCCTGGCCGATGGCATTCGCATGTTCAACATTTTG
CGCGCCAAAACTATTGCTCCCAGGCTAACGTTGTACGCCAGCGTGGATGG
ATGCAGCTACAATGCCATCTACTTGTTGTCGAACACGGCCAAGGAGCTGC
AGCAGAAGCTTTTCAAGATGCCCGGCTTCTACGAGTTCATGGCCAAGGCC
AGTGCCCAGGAGAACGGAGCCGGTGGAGCAGCCACTGCAGCTGCTGCAGC
ACTCTTCAACAATTGGGGGATGCACTCCAAGTATTCGGGCAGCGGCTCCA
ATATCTTCAACGACGCCAACAAGAGCTGCGTGTACATATCGGGGCCATCG
GGCATCCTTGTGACCATCACCGACGAGGTGCTGAACAACGAGATCAAGGA
CGGCAGCCTCTACGCGCTGGAGGTGCAGGCCGGCAAGGTGATCCTTAAGC
TGATCAACAAGCAGGACAACAACACAAGCTTTCTAGACCAT
BO05002.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:49:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gem-RG | 2760 | CG30011-PG | 1..2757 | 17..2773 | 13785 | 100 | Plus |
gem-RA | 2760 | CG30011-PA | 1..2757 | 17..2773 | 13785 | 100 | Plus |
gem-RC | 2799 | CG30011-PC | 522..2796 | 499..2773 | 11375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gem-RG | 4514 | CG30011-RG | 1295..4051 | 17..2773 | 13785 | 100 | Plus |
gem-RA | 4930 | CG30011-RA | 1711..4467 | 17..2773 | 13785 | 100 | Plus |
gem-RC | 6172 | CG30011-RC | 3435..5709 | 499..2773 | 11375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10132748..10133225 | 1311..1788 | 2390 | 100 | Plus |
2R | 25286936 | 2R | 10136595..10137009 | 2359..2773 | 2075 | 100 | Plus |
2R | 25286936 | 2R | 10131774..10132160 | 781..1167 | 1935 | 100 | Plus |
2R | 25286936 | 2R | 10127206..10127577 | 17..388 | 1860 | 100 | Plus |
2R | 25286936 | 2R | 10128821..10129031 | 499..709 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 10135468..10135672 | 1963..2167 | 1025 | 100 | Plus |
2R | 25286936 | 2R | 10133840..10134017 | 1785..1962 | 890 | 100 | Plus |
2R | 25286936 | 2R | 10132305..10132449 | 1168..1312 | 725 | 100 | Plus |
2R | 25286936 | 2R | 10135742..10135857 | 2168..2283 | 580 | 100 | Plus |
2R | 25286936 | 2R | 10128578..10128692 | 386..500 | 575 | 100 | Plus |
2R | 25286936 | 2R | 10136460..10136535 | 2283..2358 | 380 | 100 | Plus |
2R | 25286936 | 2R | 10131621..10131694 | 707..780 | 370 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6876 | 1620..1745 | 161 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6711..6859 | 1599..1746 | 139 | 57.6 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 129..213 | 1628..1708 | 128 | 63.5 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9159..9243 | 1628..1708 | 128 | 63.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6801..6896 | 1622..1716 | 126 | 60.4 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 14..59 | 291..336 | 122 | 73.9 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7052..7097 | 291..336 | 122 | 73.9 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 11..95 | 273..363 | 118 | 61.5 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7049..7133 | 273..363 | 118 | 61.5 | Plus |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2855..2908 | 271..324 | 117 | 68.5 | Plus |
Stalker | 7256 | Stalker STALKER 7256bp | 2749..2802 | 271..324 | 117 | 68.5 | Plus |
BO05002.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:15 Download gff for
BO05002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gem-RA | 1861..4617 | 17..2775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:26 Download gff for
BO05002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gem-RA | 2919..5675 | 17..2775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:30 Download gff for
BO05002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gem-RA | 1711..4467 | 17..2775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:30 Download gff for
BO05002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10135468..10135672 | 1963..2167 | 100 | -> | Plus |
2R | 10135742..10135857 | 2168..2283 | 100 | -> | Plus |
2R | 10136461..10136535 | 2284..2358 | 100 | -> | Plus |
2R | 10127206..10127577 | 17..388 | 100 | -> | Plus |
2R | 10128581..10128692 | 389..500 | 100 | -> | Plus |
2R | 10128823..10129029 | 501..707 | 100 | -> | Plus |
2R | 10131622..10131694 | 708..780 | 100 | -> | Plus |
2R | 10131774..10132160 | 781..1167 | 100 | -> | Plus |
2R | 10132305..10132449 | 1168..1312 | 100 | -> | Plus |
2R | 10132750..10133223 | 1313..1786 | 100 | -> | Plus |
2R | 10133842..10134017 | 1787..1962 | 100 | -> | Plus |
2R | 10136595..10137009 | 2359..2775 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:26 Download gff for
BO05002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6019810..6019954 | 1168..1312 | 100 | -> | Plus |
arm_2R | 6014711..6015082 | 17..388 | 100 | -> | Plus |
arm_2R | 6016086..6016197 | 389..500 | 100 | -> | Plus |
arm_2R | 6016328..6016534 | 501..707 | 100 | -> | Plus |
arm_2R | 6019127..6019199 | 708..780 | 100 | -> | Plus |
arm_2R | 6019279..6019665 | 781..1167 | 100 | -> | Plus |
arm_2R | 6020255..6020728 | 1313..1786 | 100 | -> | Plus |
arm_2R | 6021347..6021522 | 1787..1962 | 100 | -> | Plus |
arm_2R | 6022973..6023177 | 1963..2167 | 100 | -> | Plus |
arm_2R | 6023247..6023362 | 2168..2283 | 100 | -> | Plus |
arm_2R | 6023966..6024040 | 2284..2358 | 100 | -> | Plus |
arm_2R | 6024100..6024514 | 2359..2775 | 99 | | Plus |
BO05002.3prime Sequence
917 bp (816 high quality bases) assembled on 2005-12-02
> BO05002.3prime
ATGGTCTAGAAAGCTTGTGTTGTTGTCCTGCTTGTTGATCAGCTTAAGGA
TCACCTTGCCGGCCTGCACCTCCAGCGCGTAGAGGCTGCCGTCCTTGATC
TCGTTGTTCAGCACCTCGTCGGTGATGGTCACAAGGATGCCCGATGGCCC
CGATATGTACACGCAGCTCTTGTTGGCGTCGTTGAAGATATTGGAGCCGC
TGCCCGAATACTTGGAGTGCATCCCCCAATTGTTGAAGAGTGCTGCAGCA
GCTGCAGTGGCTGCTCCACCGGCTCCGTTCTCCTGGGCACTGGCCTTGGC
CATGAACTCGTAGAAGCCGGGCATCTTGAAAAGCTTCTGCTGCAGCTCCT
TGGCCGTGTTCGACAACAAGTAGATGGCATTGTAGCTGCATCCATCCACG
CTGGCGTACAACGTTAGCCTGGGAGCAATAGTTTTGGCGCGCAAAATGTT
GAACATGCGAATGCCATCGGCCAGGCCGCAAATTTGAATCAAATCCTCCT
TGGACATGCGCATGATATCCGCTCCCGAGAACTGTGCAAACGTTGAAAGA
TAGGCCGTGAGGCGATGATTGGTCAGCCACTGCGTCACTTGCGAGGGCGT
CGATTCCGGCATTATGTTCTGGCTATAATCGTCCATGTCAGCGGGCACAT
GCTGCGGTGAGACCATGTTTGTGGCGTCCATCAGCTTGAGGGTGGGCGAG
TTGGTCGATGTCACCGAGTTGATGGCTATGGGGCTGCTGCTGGTAGCCGG
CGATGCTGCACTTGGCGCAAACGGAAGCATTCCATCGTACTTGGGTATGT
GCACGGGCGAGTTTGGCCAAAGTTTCATATATTCGGGACTGTAGCAGCCG
GTTGTGGTGGCGGACATCACCCAGTCCAGGGATATATCGTTCATGATGGT
ACACTCGTAGCTGGGCT
BO05002.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30011-PA | 2760 | gem-RA | 1859..2757 | 917..19 | 4445 | 99.7 | Minus |
CG30011-PC | 2799 | gem-RC | 1898..2796 | 917..19 | 4445 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:42:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gem-RG | 4514 | CG30011-RG | 3153..4051 | 917..19 | 4465 | 99.8 | Minus |
gem-RC | 6172 | CG30011-RC | 4811..5709 | 917..19 | 4465 | 99.8 | Minus |
gem-RA | 4930 | CG30011-RA | 3569..4467 | 917..19 | 4465 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10136595..10137009 | 433..19 | 2075 | 100 | Minus |
2R | 25286936 | 2R | 10135468..10135672 | 829..625 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 10135742..10135857 | 624..509 | 580 | 100 | Minus |
2R | 25286936 | 2R | 10133930..10134017 | 917..830 | 410 | 97.7 | Minus |
2R | 25286936 | 2R | 10136460..10136535 | 509..434 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:42:44 has no hits.
BO05002.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:14:53 Download gff for
BO05002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gem-PC | 1898..2799 | 15..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:25 Download gff for
BO05002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30011-PC | 1898..2799 | 15..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:22 Download gff for
BO05002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gem-RA | 4777..5680 | 13..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:03 Download gff for
BO05002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gem-RA | 3569..4472 | 13..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:03 Download gff for
BO05002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10133930..10134017 | 830..917 | 97 | -> | Minus |
2R | 10135468..10135672 | 625..829 | 100 | -> | Minus |
2R | 10135742..10135857 | 509..624 | 100 | -> | Minus |
2R | 10136461..10136535 | 434..508 | 100 | -> | Minus |
2R | 10136595..10137014 | 13..433 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:22 Download gff for
BO05002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6021435..6021522 | 830..917 | 97 | -> | Minus |
arm_2R | 6022973..6023177 | 625..829 | 100 | -> | Minus |
arm_2R | 6023247..6023362 | 509..624 | 100 | -> | Minus |
arm_2R | 6023966..6024040 | 434..508 | 100 | -> | Minus |
arm_2R | 6024100..6024519 | 13..433 | 99 | | Minus |
BO05002.5prime Sequence
867 bp (813 high quality bases) assembled on 2005-12-02
> BO05002.5prime
GAAGTTATCAGTCGACATGGCGCTTTCGTTTCTATCCCAAAACTCCGGTC
TGTTGGATTTACAAAGCATATTCGATCCACAATATACTCATCATCAACAA
CAACAACAACAACTACTACATTTGAGCCACCACCCTCAACATCACATTCA
ACAACACCAAAATCAACAACTACAACAACAAGCGGAGCAAATTCAACAAC
ATCAACAAGAACGCACCCTTTCAACAAAGTTCGATTTGAACCTGTTCAAC
GAACTCGACCAAATGGAATTCAACAATTTAAATCGCAGTCAATATCAGAA
TAATAATAATAACAACAGTATCAGCAATAATCAAAACTCCAACAACAATA
CCAACACCACTAACGGTATCAGTGAAAATCTAAATCAGATCCAAAACCGC
CACTTCATCAGCGGCTACCACCATCAGCATATTGGATCGGACTATGAGCA
AGTGATCAACTTTGTTGACTCGCCGCCAAACTCAGAGGAATCGTGGACAG
ACGGACAGTCGAAGGACTCGCCGGGACCGCAGATCATCGACGTGCAGACC
ATTTACCTGAACAGCGGCTCACGCAAAAGACGAATGGATTGGGACTCTTT
GGACATTGGCCAAAGTGAGAACTCACCCACAGCATCGCAGAGCGGCGACT
TGCCCTCCAAAGTGGCCCATCAGGAGAAGGAAAAGCACAAGCGCGAGAAG
CACTCGGGTCGCAGCAGCTGGAGCGATGATATCGGCTTCGATCTGAACGC
CGAGTTTAACAGCAACTCATATTTGAACAATGAGAACTTCCTGTCGTTCT
CGCCCACGCTGACCACCCTGAAGCAGGAGCCCCAGACGGATCAGATCAAG
CCGAGCCCCAAGGTATC
BO05002.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30011-PA | 2760 | gem-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
CG30011-PC | 2799 | gem-RC | 1..485 | 17..501 | 2425 | 100 | Plus |
CG30011-PC | 2799 | gem-RC | 522..890 | 499..867 | 1845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gem-RG | 4514 | CG30011-RG | 1295..2145 | 17..867 | 4255 | 100 | Plus |
gem-RA | 4930 | CG30011-RA | 1711..2561 | 17..867 | 4255 | 100 | Plus |
gem-RC | 6172 | CG30011-RC | 2914..3398 | 17..501 | 2425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10127206..10127577 | 17..388 | 1860 | 100 | Plus |
2R | 25286936 | 2R | 10128821..10129031 | 499..709 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 10128578..10128692 | 386..500 | 575 | 100 | Plus |
2R | 25286936 | 2R | 10131774..10131860 | 781..867 | 435 | 100 | Plus |
2R | 25286936 | 2R | 10131621..10131694 | 707..780 | 370 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 15:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 14..59 | 291..336 | 122 | 73.9 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7052..7097 | 291..336 | 122 | 73.9 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 11..95 | 273..363 | 118 | 61.5 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7049..7133 | 273..363 | 118 | 61.5 | Plus |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2855..2908 | 271..324 | 117 | 68.5 | Plus |
Stalker | 7256 | Stalker STALKER 7256bp | 2749..2802 | 271..324 | 117 | 68.5 | Plus |
accord2 | 7650 | accord2 QBERT 7650bp | 6208..6296 | 385..297 | 112 | 58.4 | Minus |
BO05002.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:14:54 Download gff for
BO05002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gem-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:26 Download gff for
BO05002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30011-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:35:17 Download gff for
BO05002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gem-RA | 2916..3769 | 13..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:45 Download gff for
BO05002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gem-RA | 1708..2561 | 13..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:45 Download gff for
BO05002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10131774..10131860 | 781..867 | 100 | | Plus |
2R | 10127199..10127577 | 11..388 | 99 | -> | Plus |
2R | 10128581..10128692 | 389..500 | 100 | -> | Plus |
2R | 10128823..10129029 | 501..707 | 100 | -> | Plus |
2R | 10131622..10131694 | 708..780 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:35:17 Download gff for
BO05002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6014704..6015082 | 11..388 | 99 | -> | Plus |
arm_2R | 6016086..6016197 | 389..500 | 100 | -> | Plus |
arm_2R | 6016328..6016534 | 501..707 | 100 | -> | Plus |
arm_2R | 6019127..6019199 | 708..780 | 100 | -> | Plus |
arm_2R | 6019279..6019365 | 781..867 | 100 | | Plus |
BO05002.pep Sequence
Translation from 16 to 2791
> BO05002.pep
MALSFLSQNSGLLDLQSIFDPQYTHHQQQQQQLLHLSHHPQHHIQQHQNQ
QLQQQAEQIQQHQQERTLSTKFDLNLFNELDQMEFNNLNRSQYQNNNNNN
SISNNQNSNNNTNTTNGISENLNQIQNRHFISGYHHQHIGSDYEQVINFV
DSPPNSEESWTDGQSKDSPGPQIIDVQTIYLNSGSRKRRMDWDSLDIGQS
ENSPTASQSGDLPSKVAHQEKEKHKREKHSGRSSWSDDIGFDLNAEFNSN
SYLNNENFLSFSPTLTTLKQEPQTDQIKPSPKVSLDNASASPSIAIAKLD
EVQNSPSQAISGQDSANGSGSAANGKHDVNSGLACGCGSPQGSPLANAEY
ELNEKGKPQQLSVLDPAKIEIGSANGATHAEDHKFQYILAAATSIATKNN
EETLTYLNQGQSYEIKLKKIGDLSLYRDKILKSVIKICFHERRLQFMERE
QMQQWQQSRPGERIIEVDVPLSYGLCHVSQPLSSGSLNTVEIFWDPLKEV
GVYIKVNCISTEFTPKKHGGEKGVPFRLQIETYIENTNSATASGSGGSNN
SAIASGSGSSGSAAPASPERTPSAGSNGKQAVHAAACQIKVFKLKGADRK
HKQDREKIQKRPQSEQEKFQPSYECTIMNDISLDLVMSATTTGCYSPEYM
KLWPNSPVHIPKYDGMLPFAPSAASPATSSSPIAINSVTSTNSPTLKLMD
ATNMVSPQHVPADMDDYSQNIMPESTPSQVTQWLTNHRLTAYLSTFAQFS
GADIMRMSKEDLIQICGLADGIRMFNILRAKTIAPRLTLYASVDGCSYNA
IYLLSNTAKELQQKLFKMPGFYEFMAKASAQENGAGGAATAAAAALFNNW
GMHSKYSGSGSNIFNDANKSCVYISGPSGILVTITDEVLNNEIKDGSLYA
LEVQAGKVILKLINKQDNNTSFLDH
BO05002.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gem-PG | 919 | CG30011-PG | 1..919 | 1..919 | 4784 | 100 | Plus |
gem-PA | 919 | CG30011-PA | 1..919 | 1..919 | 4784 | 100 | Plus |
gem-PC | 932 | CG30011-PC | 1..932 | 1..919 | 4760 | 98.6 | Plus |
gem-PF | 270 | CG30011-PF | 1..270 | 650..919 | 1390 | 100 | Plus |
grh-PO | 698 | CG42311-PO | 299..484 | 385..611 | 209 | 27.3 | Plus |