Clone BO05005 Report

Search the DGRC for BO05005

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG16778-RB
Protein status:BO05005.pep: Imported from assembly
Sequenced Size:3172

Clone Sequence Records

BO05005.3prime Sequence

851 bp (849 high quality bases) assembled on 2005-12-02

> BO05005.3prime
ATGGTCTAGAAAGCTTGCATCATGCCCGGTCCCACCGTTGGATGGCGTAA
GTGGTGGGCCCGTCGCGCTTATCTCCCGACGGTGCTCCAGCGAGAGCGGT
ATTCCAGGACCTGAGTAGTCTTCGTCCACGGAAGAGGACTGCTTCGATCC
AACAGACTTGCAGTCCTCATCCATGCTCACGCCAAGATGGTGCATAGCCG
CAGCTGCATGATGGCGTTCTGCCGGCGGCAAAAGGTTTAACATGCTCAGA
GGGAGGCCGGGAAAGCCGCCCGAAAAATCAGGGTAGAAACCCTGTGGGTT
GAAGGGATTGAACAGGGCATTTGGGGCACTCAGTAAATCGGGCTCGGAAC
TGTTACTACGGGGTCCTCCTGGGGGTCCCAGGGGAAGTCCCAGATCCAGG
TCTAACTGTCCCATAGGCCCCAGTTCACCGGAATGCTGCATTGGTCCACT
GCCGGAGGTCGGTGCTCCGCCTTGGGAATTAGCAGACCCCCCCGAACCGT
TGCTGCTCATGGAGTTCTTGTCCTTTTCCTTCTCCTTGCGCTCCTTGCTC
TTCTCATTCTTCGTGGAACCACCGCTACCTCCGCCGATGCCCATTTGCAG
CATTTCTATCGGTGGTCCACTGATGCAGTCCTTCCGCAGCTGCTCCAGTT
TTAAACTCTTTCCGTATTTTCCCCGGACGTACATCAGTAGAGAATTGTAG
GGGATACCGAAAATCCGCGACGCCTGCGACGTGGTCATCTTTTTGTTCCA
AACGTGCTGCAGTGCCTCCGTCAGTTCTGTGTTAGTCCATGAGCGTGGAG
GACCGCCGCGTGGGGCTGAGTGCTGTCCCTTTGGTCGCGGCATTTTCTTT
T

BO05005.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG16778-PB 3141 Tkr-RB 2306..3138 851..19 4165 100 Minus
CG16778-PC 3141 Tkr-RC 2306..3138 851..19 4165 100 Minus
CG16778-PA 3141 Tkr-RA 2306..3138 851..19 4165 100 Minus
CG16778-PD 3141 Tkr-RD 2306..3138 851..19 4165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
lov-RF 4185 CG16778-RF 2854..3686 851..19 4165 100 Minus
lov-RE 3826 CG16778-RE 2495..3327 851..19 4165 100 Minus
lov-RD 4712 CG16778-RD 2749..3581 851..19 4165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25086911..25087734 19..842 4120 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:14:57 has no hits.

BO05005.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:14:57 Download gff for BO05005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16778-PB 2306..3141 16..851 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:30 Download gff for BO05005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16778-PD 2306..3141 16..851 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:00 Download gff for BO05005.3prime
Subject Subject Range Query Range Percent Splice Strand
lov-RD 2749..3589 11..851 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:17:56 Download gff for BO05005.3prime
Subject Subject Range Query Range Percent Splice Strand
lov-RD 2749..3589 11..851 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:17:56 Download gff for BO05005.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 25086903..25087734 11..842 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:00 Download gff for BO05005.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20974426..20975257 11..842 99   Plus

BO05005.5prime Sequence

921 bp (810 high quality bases) assembled on 2005-12-02

> BO05005.5prime
GAAGTTATCAGTCGACATGTTAAAGGACGCCCACCAGAAGTTGATTAAAC
ATCGCCAATCGACGAAGCTCTCCATGACCGACTTCGCTTGTCAGGCGGCG
CCTGTAAAGCAGCCCCTGCCGCTAGAATTGCCGCTGCCTTTGTCAGTGCA
GCTACAGCTTTTAGCAAAGACTCCGACCAGTGATCACGCCCCAATGCACT
CTACGCCTCCGACGACCCCGCCTACGCCACCTCCTCTGCCCTTGAACATG
AGTCAATCGGCATCGGCGGTAACGGAAGCTGCTACTCCAGAAAACAGTCT
GCCTGCCACACCACCCTCAGAAGGTGCACTAGCTGTACCATCGGCCCCAC
AGGATCACTACAGCCTACGCTGGAACAACCACCAGAACCACATCCTGCGG
GCATTCGATGCACTGCTGAAGACCAAAACGCTGGTGGACGTGACCCTGGT
CTGCGCGGAGACTTCGATCCGGGCTCACAAAATGGTGCTCTCCGCCTGTT
CGCCCTTCTTCCAGCGCGTCTTTGCGGAAACTCCCTGCAAGCACCCAGTT
ATAGTGCTCAAGGATTTCCGGGGTTGGGTAGTGCAGGCCATTGTAGACTT
TATGTACCGCGGAGAGATCAGCGTGCCCCAGCAGAGACTCCAGACACTCA
TCCAGGCCGGAGAGTCGCTTCAAGTCCGAGGCTTGGTGGAGAGCTCTGTC
CCAGAACACACTCCCACACCGGCCGCTTCCCCCGATGATTTCGGGATGTT
GGACACCTCTATGCTGTCCTCTACCTTTGAGGACGAGTGTCCGACGATGG
TCCGACCCTCTAAGGGTGGAAAGCTTTTGATGCCGTCCGCCCGACTGTTT
GGCAACGCTTCAAGCGCCATTGCTGCTCTAGGTTTGCGACGAAAACGAGA
GCAGGAGTCCGACCGCGACTT

BO05005.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG16778-PB 3141 Tkr-RB 1..905 17..921 4525 100 Plus
CG16778-PC 3141 Tkr-RC 1..905 17..921 4525 100 Plus
CG16778-PA 3141 Tkr-RA 1..905 17..921 4525 100 Plus
CG16778-PD 3141 Tkr-RD 1..905 17..921 4525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
lov-RF 4185 CG16778-RF 548..1453 16..921 4530 100 Plus
lov-RE 3826 CG16778-RE 189..1094 16..921 4530 100 Plus
lov-RD 4712 CG16778-RD 443..1348 16..921 4530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25095559..25096464 921..16 4530 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:33:39 has no hits.

BO05005.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:14:58 Download gff for BO05005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16778-PB 1..905 17..921 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:32 Download gff for BO05005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16778-PD 1..905 17..921 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:18:34 Download gff for BO05005.5prime
Subject Subject Range Query Range Percent Splice Strand
lov-RD 443..1348 16..921 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:37:24 Download gff for BO05005.5prime
Subject Subject Range Query Range Percent Splice Strand
lov-RD 443..1348 16..921 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:37:24 Download gff for BO05005.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 25095559..25096464 16..921 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:18:34 Download gff for BO05005.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20983082..20983987 16..921 100   Minus

BO05005.complete Sequence

3172 bp assembled on 2008-08-14

GenBank Submission: FJ629935

> BO05005.complete
GAAGTTATCAGTCGACATGTTAAAGGACGCCCACCAGAAGTTGATTAAAC
ATCGCCAATCGACGAAGCTCTCCATGACCGACTTCGCTTGTCAGGCGGCG
CCTGTAAAGCAGCCCCTGCCGCTAGAATTGCCGCTGCCTTTGTCAGTGCA
GCTACAGCTTTTAGCAAAGACTCCGACCAGTGATCACGCCCCAATGCACT
CTACGCCTCCGACGACCCCGCCTACGCCACCTCCTCTGCCCTTGAACATG
AGTCAATCGGCATCGGCGGTAACGGAAGCTGCTACTCCAGAAAACAGTCT
GCCTGCCACACCACCCTCAGAAGGTGCACTAGCTGTACCATCGGCCCCAC
AGGATCACTACAGCCTACGCTGGAACAACCACCAGAACCACATCCTGCGG
GCATTCGATGCACTGCTGAAGACCAAAACGCTGGTGGACGTGACCCTGGT
CTGCGCGGAGACTTCGATCCGGGCTCACAAAATGGTGCTCTCCGCCTGTT
CGCCCTTCTTCCAGCGCGTCTTTGCGGAAACTCCCTGCAAGCACCCAGTT
ATAGTGCTCAAGGATTTCCGGGGTTGGGTAGTGCAGGCCATTGTAGACTT
TATGTACCGCGGAGAGATCAGCGTGCCCCAGCAGAGACTCCAGACACTCA
TCCAGGCCGGAGAGTCGCTTCAAGTCCGAGGCTTGGTGGAGAGCTCTGTC
CCAGAACACACTCCCACACCGGCCGCTTCCCCCGATGATTTCGGGATGTT
GGACACCTCTATGCTGTCCTCTACCTTTGAGGACGAGTGTCCGACGATGG
TCCGACCCTCTAAGGGTGGAAAGCTTTTGATGCCGTCCGCCCGACTGTTT
GGCAACGCTTCAAGCGCCATTGCTGCTCTAGGTTTGCGACGAAAACGAGA
GCAGGAGTCCGACCGCGACTTGGAGAGTGATCAGGAGCTGGGAGGCAGTT
CACCTATGCCACGACGTAAGCAAGCGCGACCGCGGCGCCGCTCCGGCGAT
GTGCCGCACGACTTTACCTTAAACAAAACCGATGCAGAATCCTTGCAAAC
TGTGATCAAGCACGAGCTTCTAGAGCGAGCGGAAAGAGATCAGGAAGAGG
CTCCTGATCAAGATAACAGCCAAGGGGAAGCTGAAAAAATTAGTTCGTCG
CCAGCAAAAACGTTGGTTGAACGGGCTAAGGAGCAAAAGTCCATGAAAGA
AGAAGGATCCGATCAACCACGCAGTCTAAACGAGAATCACCATCAACTCG
AGCTTGACGATGAGGACGACGACGATCAGGATCATGAAGAGGAAGAGGAG
CAAGACATTGAAGAGCTTATTCATACGACCAACGAGCTGAGGCGTCAGGC
TGCAGCAGCTGCTGCAAATGCAGCCGCCATGTCTCCCAACCCTTCTCCCT
GCCTCAGTGACGGGCCCGAGGACCTCTGCACCACTAAGAAAGGCAAGGAA
CTAATTTCTGGCCCCTCTAGTTCGGCAGACTGTGAGTCCAATAACAACAA
CAGCAGCAAGCTGCAGGACAACAACCAGCGCATAATGCTGTCTCTAAAGG
ACATCCGCCAACTAAACGCTAATCCGAACCCTACGGCCATCCACACGCCT
ACTAGCTGTTCTGGGGGCAACAACGGACTACTTACTTTCCCTCCGCCCGG
ACTTCGGCCTCCTGGTCTACCAGACAGCCCGCCCTGCCACATGGAAGCGC
TAGAGGCACAGATGCACGCAGCTGCTGCTGCTGCCGTGGCGGCTGCTGGA
TCTGGGGAGCATCCCTTCCATCATATGGAGCACCAGATGGAGATGTCTTT
GGCGGCTGCAGCGGCAGCTGCTGCGATGCATCAGCGTGAGCCACGGGATC
CCCGTGATGGGCGCGACCACAACGCATTTGCGAGCAATTTGCTGGGGCCA
ATGGGGATGCCCCCGTTCGGAGGACATAACGGAGGCCATCCGGGCAACAG
TGGTCCAGGAAACGGATGTCCTGGACAAGCTGCGCACGAAAGACTTGAGG
AGAGTATGAATCGACTGAGTAAGGAGCTTGGTAAGGAGTTTGGAAAGGAG
TTTGGAAAGGAGTTTGGAAAGGAGTTTGGTCCGGCATCGCCAATGAGTCT
GCAAGGTCCCTTCAATGCACCGGATGGACCCCCGCATCCGCCATCACCAT
TGCCCTTTCCTGGCATGTCCTCTGCGATGACGCTGACTCCGCCACATATG
TTTGGTCTCGACTCACCACTTGGACTCTTTCCACCCGGAATCGATCCTGG
CAAGCTTTATAACCCGTTAATGGAAATGAGCGATCCAAGGGACATGCCTG
GCGGGCCGCCTCCATTCCTTAAAAAGAAAATGCCGCGACCAAAGGGACAG
CACTCAGCCCCACGCGGCGGTCCTCCACGCTCATGGACTAACACAGAACT
GACGGAGGCACTGCAGCACGTTTGGAACAAAAAGATGACCACGTCGCAGG
CGTCGCGGATTTTCGGTATCCCCTACAATTCTCTACTGATGTACGTCCGG
GGAAAATACGGAAAGAGTTTAAAACTGGAGCAGCTGCGGAAGGACTGCAT
CAGTGGACCACCGATAGAAATGCTGCAAATGGGCATCGGCGGAGGTAGCG
GTGGTTCCACGAAGAATGAGAAGAGCAAGGAGCGCAAGGAGAAGGAAAAG
GACAAGAACTCCATGAGCAGCAACGGTTCGGGGGGGTCTGCTAATTCCCA
AGGCGGAGCACCGACCTCCGGCAGTGGACCAATGCAGCATTCCGGTGAAC
TGGGGCCTATGGGACAGTTAGACCTGGATCTGGGACTTCCCCTGGGACCC
CCAGGAGGACCCCGTAGTAACAGTTCCGAGCCCGATTTACTGAGTGCCCC
AAATGCCCTGTTCAATCCCTTCAACCCACAGGGTTTCTACCCTGATTTTT
CGGGCGGCTTTCCCGGCCTCCCTCTGAGCATGTTAAACCTTTTGCCGCCG
GCAGAACGCCATCATGCAGCTGCGGCTATGCACCATCTTGGCGTGAGCAT
GGATGAGGACTGCAAGTCTGTTGGATCGAAGCAGTCCTCTTCCGTGGACG
AAGACTACTCAGGTCCTGGAATACCGCTCTCGCTGGAGCACCGTCGGGAG
ATAAGCGCGACGGGCCCACCACTTACGCCATCCAACGGTGGGACCGGGCA
TGATGCAAGCTTTCTAGACCAT

BO05005.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
lov-RF 3141 CG16778-PF 1..3138 17..3154 15690 100 Plus
lov-RE 3432 CG16778-PE 1..3138 17..3154 15690 100 Plus
lov-RD 3141 CG16778-PD 1..3138 17..3154 15690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
lov-RF 4185 CG16778-RF 548..3686 16..3154 15695 100 Plus
lov-RE 3826 CG16778-RE 189..3327 16..3154 15695 100 Plus
lov-RD 4712 CG16778-RD 443..3581 16..3154 15695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25094282..25096464 2198..16 10915 100 Minus
2R 25286936 2R 25086911..25087734 3154..2331 4120 100 Minus
2R 25286936 2R 25091592..25091723 2330..2199 660 100 Minus
Blast to na_te.dros performed 2014-11-27 15:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
hopper2 1593 hopper2 HOPPER2 1593bp 35..112 1325..1248 120 61.5 Minus

BO05005.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:23 Download gff for BO05005.complete
Subject Subject Range Query Range Percent Splice Strand
Tkr-RA 462..3608 16..3162 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:18 Download gff for BO05005.complete
Subject Subject Range Query Range Percent Splice Strand
lov-RD 449..3581 22..3156 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:17 Download gff for BO05005.complete
Subject Subject Range Query Range Percent Splice Strand
Tkr-RA 468..3600 22..3156 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:54 Download gff for BO05005.complete
Subject Subject Range Query Range Percent Splice Strand
lov-RD 449..3581 22..3156 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:54 Download gff for BO05005.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25086908..25087734 2331..3156 99 <- Minus
2R 25091592..25091723 2199..2330 100 <- Minus
2R 25094282..25096458 22..2198 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:18 Download gff for BO05005.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20974431..20975257 2331..3156 99 <- Minus
arm_2R 20979115..20979246 2199..2330 100 <- Minus
arm_2R 20981805..20983981 22..2198 100   Minus

BO05005.pep Sequence

Translation from 16 to 3172

> BO05005.pep
MLKDAHQKLIKHRQSTKLSMTDFACQAAPVKQPLPLELPLPLSVQLQLLA
KTPTSDHAPMHSTPPTTPPTPPPLPLNMSQSASAVTEAATPENSLPATPP
SEGALAVPSAPQDHYSLRWNNHQNHILRAFDALLKTKTLVDVTLVCAETS
IRAHKMVLSACSPFFQRVFAETPCKHPVIVLKDFRGWVVQAIVDFMYRGE
ISVPQQRLQTLIQAGESLQVRGLVESSVPEHTPTPAASPDDFGMLDTSML
SSTFEDECPTMVRPSKGGKLLMPSARLFGNASSAIAALGLRRKREQESDR
DLESDQELGGSSPMPRRKQARPRRRSGDVPHDFTLNKTDAESLQTVIKHE
LLERAERDQEEAPDQDNSQGEAEKISSSPAKTLVERAKEQKSMKEEGSDQ
PRSLNENHHQLELDDEDDDDQDHEEEEEQDIEELIHTTNELRRQAAAAAA
NAAAMSPNPSPCLSDGPEDLCTTKKGKELISGPSSSADCESNNNNSSKLQ
DNNQRIMLSLKDIRQLNANPNPTAIHTPTSCSGGNNGLLTFPPPGLRPPG
LPDSPPCHMEALEAQMHAAAAAAVAAAGSGEHPFHHMEHQMEMSLAAAAA
AAAMHQREPRDPRDGRDHNAFASNLLGPMGMPPFGGHNGGHPGNSGPGNG
CPGQAAHERLEESMNRLSKELGKEFGKEFGKEFGKEFGPASPMSLQGPFN
APDGPPHPPSPLPFPGMSSAMTLTPPHMFGLDSPLGLFPPGIDPGKLYNP
LMEMSDPRDMPGGPPPFLKKKMPRPKGQHSAPRGGPPRSWTNTELTEALQ
HVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPI
EMLQMGIGGGSGGSTKNEKSKERKEKEKDKNSMSSNGSGGSANSQGGAPT
SGSGPMQHSGELGPMGQLDLDLGLPLGPPGGPRSNSSEPDLLSAPNALFN
PFNPQGFYPDFSGGFPGLPLSMLNLLPPAERHHAAAAMHHLGVSMDEDCK
SVGSKQSSSVDEDYSGPGIPLSLEHRREISATGPPLTPSNGGTGHDASFL
DH

BO05005.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
lov-PF 1046 CG16778-PF 1..1046 1..1046 5551 100 Plus
lov-PE 1143 CG16778-PE 1..1046 1..1046 5551 100 Plus
lov-PD 1046 CG16778-PD 1..1046 1..1046 5551 100 Plus
lov-PC 1046 CG16778-PC 1..1046 1..1046 5551 100 Plus
lov-PB 1046 CG16778-PB 1..1046 1..1046 5551 100 Plus