Clone BO05007 Report

Search the DGRC for BO05007

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG31388-RA
Protein status:BO05007.pep: validated full length
Sequenced Size:1372

Clone Sequence Records

BO05007.3prime Sequence

885 bp (749 high quality bases) assembled on 2005-12-02

> BO05007.3prime
ATGGTCTAGAAAGCTTGCATTCGTTGAACAATTTCTTCCACGGGAATTGG
GGGATGCAGCAGCTTTAGCACGCGCCTCCAGAGTTTTGTGGGCATTGGAC
TTCAGATGGGATCTGTAGTGTTTGGCTGTCTTGAAGCTTATGCGGCAGAT
TTCGCAGCCGTGATCGCGAGTCAAGTTGTGATACTTTTGATGTGTCCTGC
ACTCGCTGGGTGTTACATACGACTTGGGGCAGTACTCGCACTGGTAGATA
CGCTTGCTGGCGTCCATGTGAACCCTTTCATGCATGCTGCGGGCGCTGCA
AAAGCGAAAGGTTTTGCCACAGTTGTAGCGACAGATGTAGGGACGCTCGG
TTGTGTGGGTTTTCTGATGGGAACAGAGTTCGGCGGCTGTATAAAAGGAT
GCGCTGCACTGGTCGCATTTGTGGCGTCGTGTGCCCGCGTGGCGAACCAG
GTGATTCTTCAGATTAAAGGCCGTGGTCAGATGCTTGCCACATATGTGGC
ACACATGCTGGGACGCCGGCGGCCTGAGACACCGCTGTTTGTGAGTCTCC
AGCAGAATGTGATTGTGGAATTGGCTCTTGCACTTGGTGCAGGAGTGCGT
CAATGGAAGATTAATCATGTTGCAGTGCCGCGTAAGTGCGGCTGCTGATC
GGAAGCCCTCGTCACAGTGGTCACAGACGAATTTGGTATCTGGCGGGATG
TCGTGCAGATGGTATTTGTGCAGCTTCAGTTCGTCCACGTTTTCGAATTC
GAGGCCACACTTGCTGCACGTGTGGCTGGAGGAAGTGTCCCGATTATCGA
TAGCTTCACTTTCGGGTTCTGATTCGGGAGAGAGGCCCATGTCAAAGTGC
TCATTCGACAACTGGCTATCTGTTGAAAGTTCTGG

BO05007.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-PA 1341 CG31388-RA 472..1338 885..19 4335 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-RA 1472 CG31388-RA 526..1392 885..19 4335 100 Minus
CG31388-RB 1562 CG31388-RB 818..1482 683..19 3325 100 Minus
CG31388-RB 1562 CG31388-RB 526..729 885..682 1020 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11239110..11239434 598..274 1625 100 Minus
3R 32079331 3R 11238407..11238609 885..683 1015 100 Minus
3R 32079331 3R 11239895..11240034 158..19 700 100 Minus
3R 32079331 3R 11239509..11239627 276..158 595 100 Minus
3R 32079331 3R 11238957..11239041 682..598 425 100 Minus
Blast to na_te.dros performed on 2015-02-09 18:42:54 has no hits.

BO05007.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:00 Download gff for BO05007.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-PA 472..1341 16..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:36 Download gff for BO05007.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-PA 472..1341 16..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:23 Download gff for BO05007.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 526..1398 11..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:05 Download gff for BO05007.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 526..1398 11..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:05 Download gff for BO05007.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11238407..11238609 683..885 100 -> Minus
3R 11238957..11239041 598..682 100 -> Minus
3R 11239111..11239433 275..597 100 -> Minus
3R 11239511..11239627 158..274 100 -> Minus
3R 11239896..11240038 15..157 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:23 Download gff for BO05007.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7064679..7064763 598..682 100 -> Minus
arm_3R 7064129..7064331 683..885 100 -> Minus
arm_3R 7064833..7065155 275..597 100 -> Minus
arm_3R 7065233..7065349 158..274 100 -> Minus
arm_3R 7065618..7065760 15..157 98 -> Minus

BO05007.5prime Sequence

929 bp (792 high quality bases) assembled on 2005-12-02

> BO05007.5prime
GAAGTTATCAGTCGACATGAGGTACATTTGCAGGACCTGTTCTCGTATGG
CTGATCCTGCGGTAGCCAAGAATCTCTTCGATCCATCGAGTTCTTCCGTT
TTGCGTCAAATAGAGACTCTAACTAACTTGCAGCTAAAAGAGGACGGCAA
GTTGCCCAGGTTCATGTGCCAGGACTGCCAGCACGACCTGCAGATTGCCA
TCGATTTCCGCCGCGTTTGCATCGAGGCCCAGGAGCTCCTTGAACTTCAG
CTAAGGCAGGTGGAAAAGGAGGAGGAGGCGTTCGAGAGCCTGGCGGAGCA
ATGGCTGGATGATTGTCCGGATGAGTTGTCCAACTTGTCGCCAGTGCTAC
AGCTGAATGATCGCATGGATTTTATCTTCGATCCCGAGCCACAGGATAAG
AATACGGATGAGTTGGCTTCCATAAAGACCACGACAACAACAGAGTATAT
GAATGCATACCAGTCAGTGGCCAGTCCGCAATCTTCTCCAGAACTTTCAA
CAGATAGCCAGTTGTCGAATGAGCACTTTGACATGGGCCTCTCTCCCGAA
TCAGAACCCGAAAGTGAAGCTATCGATAATCGGGACACTTCCTCCAGCCA
CACGTGCAGCAAGTGTGGCCTCGAATTCGAAAACGTGGACGAACTGAAGC
TGCACAAATACCATCTGCACGACATCCCGCCAGATACCAAATTCGTCTGT
GACCACTGTGACGAGGGCTTCCGATCAGCAGCCGCACTTACGCGGCACTG
CAACATGATTAATCTTCCATTGACGCACTCCTGCACCAAGTGCAAGAGCC
AATTCCACAATCACATTCTGCTGGAGACTCACAAACAGCGGTGTCTCAGG
CCGCCGGCGTCCCAGCATGTGTGCCACATATGTGGCAAGCATCTGACCAC
GGCCTTTAATCTGAAAAATCCCCTGGGTT

BO05007.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-PA 1341 CG31388-RA 1..910 17..926 4500 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-RA 1472 CG31388-RA 54..964 16..926 4525 99.8 Plus
CG31388-RB 1562 CG31388-RB 54..729 16..691 3380 100 Plus
CG31388-RB 1562 CG31388-RB 818..1054 690..926 1155 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11238047..11238609 128..690 2815 100 Plus
3R 32079331 3R 11239110..11239261 775..926 730 98.7 Plus
3R 32079331 3R 11237868..11237985 16..133 590 100 Plus
3R 32079331 3R 11238957..11239041 691..775 425 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:46:03 has no hits.

BO05007.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:01 Download gff for BO05007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-PA 1..912 17..929 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:37 Download gff for BO05007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-PA 1..912 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:35:20 Download gff for BO05007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 51..966 10..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:54 Download gff for BO05007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 51..966 10..929 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:54 Download gff for BO05007.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11237865..11237985 10..133 97 -> Plus
3R 11238053..11238609 134..690 100 -> Plus
3R 11238957..11239041 691..775 100 -> Plus
3R 11239111..11239263 776..929 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:35:20 Download gff for BO05007.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7063587..7063707 10..133 97 -> Plus
arm_3R 7063775..7064331 134..690 100 -> Plus
arm_3R 7064679..7064763 691..775 100 -> Plus
arm_3R 7064833..7064985 776..929 98   Plus

BO05007.complete Sequence

1372 bp (1372 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629936

> BO05007.complete
GAAGTTATCAGTCGACATGAGGTACATTTGCAGGACCTGTTCTCGTATGG
CTGATCCTGCGGTAGCCAAGAATCTCTTCGATCCATCGAGTTCTTCCGTT
TTGCGTCAAATAGAGACTCTAACTAACTTGCAGCTAAAAGAGGACGGCAA
GTTGCCCAGGTTCATGTGCCAGGACTGCCAGCACGACCTGCAGATTGCCA
TCGATTTCCGCCGCGTTTGCATCGAGGCCCAGGAGCTCCTTGAACTTCAG
CTAAGGCAGGTGGAAAAGGAGGAGGAGGCGTTCGAGAGCCTGGCGGAGCA
ATGGCTGGATGATTGTCCGGATGAGTTGTCCAACTTGTCGCCAGTGCTAC
AGCTGAATGATCGCATGGATTTTATCTTCGATCCCGAGCCACAGGATAAG
AATACGGATGAGTTGGCTTCCATAAAGACCACGACAACAACAGAGTATAT
GAATGCATACCAGTCAGTGGCCAGTCCGCAATCTTCTCCAGAACTTTCAA
CAGATAGCCAGTTGTCGAATGAGCACTTTGACATGGGCCTCTCTCCCGAA
TCAGAACCCGAAAGTGAAGCTATCGATAATCGGGACACTTCCTCCAGCCA
CACGTGCAGCAAGTGTGGCCTCGAATTCGAAAACGTGGACGAACTGAAGC
TGCACAAATACCATCTGCACGACATCCCGCCAGATACCAAATTCGTCTGT
GACCACTGTGACGAGGGCTTCCGATCAGCAGCCGCACTTACGCGGCACTG
CAACATGATTAATCTTCCATTGACGCACTCCTGCACCAAGTGCAAGAGCC
AATTCCACAATCACATTCTGCTGGAGACTCACAAACAGCGGTGTCTCAGG
CCGCCGGCGTCCCAGCATGTGTGCCACATATGTGGCAAGCATCTGACCAC
GGCCTTTAATCTGAAGAATCACCTGGTTCGCCACGCGGGCACACGACGCC
ACAAATGCGACCAGTGCAGCGCATCCTTTTATACAGCCGCCGAACTCTGT
TCCCATCAGAAAACCCACACAACCGAGCGTCCCTACATCTGTCGCTACAA
CTGTGGCAAAACCTTTCGCTTTTGCAGCGCCCGCAGCATGCATGAAAGGG
TTCACATGGACGCCAGCAAGCGTATCTACCAGTGCGAGTACTGCCCCAAG
TCGTATGTAACACCCAGCGAGTGCAGGACACATCAAAAGTATCACAACTT
GACTCGCGATCACGGCTGCGAAATCTGCCGCATAAGCTTCAAGACAGCCA
AACACTACAGATCCCATCTGAAGTCCAATGCCCACAAAACTCTGGAGGCG
CGTGCTAAAGCTGCTGCATCCCCCAATTCCCGTGGAAGAAATTGTTCAAC
GAATGCAAGCTTTCTAGACCAT

BO05007.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-RA 1341 CG31388-PA 1..1338 17..1354 6690 100 Plus
CG31388-RB 741 CG31388-PB 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-RA 1472 CG31388-RA 54..1392 16..1354 6695 100 Plus
CG31388-RB 1562 CG31388-RB 54..729 16..691 3380 100 Plus
CG31388-RB 1562 CG31388-RB 818..1482 690..1354 3325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11238047..11238609 128..690 2815 100 Plus
3R 32079331 3R 11239110..11239434 775..1099 1625 100 Plus
3R 32079331 3R 11239895..11240034 1215..1354 700 100 Plus
3R 32079331 3R 11239509..11239627 1097..1215 595 100 Plus
3R 32079331 3R 11237868..11237985 16..133 590 100 Plus
3R 32079331 3R 11238957..11239041 691..775 425 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:35:36 has no hits.

BO05007.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:53 Download gff for BO05007.complete
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 1..1341 17..1357 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:58:37 Download gff for BO05007.complete
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 55..1392 17..1356 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:26 Download gff for BO05007.complete
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 55..1392 17..1356 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:54 Download gff for BO05007.complete
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 51..1398 10..1362 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:12 Download gff for BO05007.complete
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 55..1392 17..1356 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:12 Download gff for BO05007.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11237869..11237985 17..133 100 -> Plus
3R 11238053..11238609 134..690 100 -> Plus
3R 11238957..11239041 691..775 100 -> Plus
3R 11239111..11239433 776..1098 100 -> Plus
3R 11239511..11239627 1099..1215 100 -> Plus
3R 11239896..11240034 1216..1356 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:26 Download gff for BO05007.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7063591..7063707 17..133 100 -> Plus
arm_3R 7064833..7065155 776..1098 100 -> Plus
arm_3R 7065233..7065349 1099..1215 100 -> Plus
arm_3R 7063775..7064331 134..690 100 -> Plus
arm_3R 7064679..7064763 691..775 100 -> Plus
arm_3R 7065618..7065756 1216..1356 98   Plus

BO05007.pep Sequence

Translation from 16 to 1372

> BO05007.pep
MRYICRTCSRMADPAVAKNLFDPSSSSVLRQIETLTNLQLKEDGKLPRFM
CQDCQHDLQIAIDFRRVCIEAQELLELQLRQVEKEEEAFESLAEQWLDDC
PDELSNLSPVLQLNDRMDFIFDPEPQDKNTDELASIKTTTTTEYMNAYQS
VASPQSSPELSTDSQLSNEHFDMGLSPESEPESEAIDNRDTSSSHTCSKC
GLEFENVDELKLHKYHLHDIPPDTKFVCDHCDEGFRSAAALTRHCNMINL
PLTHSCTKCKSQFHNHILLETHKQRCLRPPASQHVCHICGKHLTTAFNLK
NHLVRHAGTRRHKCDQCSASFYTAAELCSHQKTHTTERPYICRYNCGKTF
RFCSARSMHERVHMDASKRIYQCEYCPKSYVTPSECRTHQKYHNLTRDHG
CEICRISFKTAKHYRSHLKSNAHKTLEARAKAAASPNSRGRNCSTNASFL
DH

BO05007.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-PA 446 CG31388-PA 1..446 1..446 2431 100 Plus
CG31388-PB 246 CG31388-PB 1..227 1..227 1182 99.1 Plus
CG8319-PA 383 CG8319-PA 1..368 1..417 322 24.6 Plus
CG6689-PA 613 CG6689-PA 167..598 5..424 302 24.9 Plus
Meics-PB 571 CG8474-PB 21..474 5..452 301 24.1 Plus