Clone Sequence Records
BO05007.3prime Sequence
885 bp (749 high quality bases) assembled on 2005-12-02
> BO05007.3prime
ATGGTCTAGAAAGCTTGCATTCGTTGAACAATTTCTTCCACGGGAATTGG
GGGATGCAGCAGCTTTAGCACGCGCCTCCAGAGTTTTGTGGGCATTGGAC
TTCAGATGGGATCTGTAGTGTTTGGCTGTCTTGAAGCTTATGCGGCAGAT
TTCGCAGCCGTGATCGCGAGTCAAGTTGTGATACTTTTGATGTGTCCTGC
ACTCGCTGGGTGTTACATACGACTTGGGGCAGTACTCGCACTGGTAGATA
CGCTTGCTGGCGTCCATGTGAACCCTTTCATGCATGCTGCGGGCGCTGCA
AAAGCGAAAGGTTTTGCCACAGTTGTAGCGACAGATGTAGGGACGCTCGG
TTGTGTGGGTTTTCTGATGGGAACAGAGTTCGGCGGCTGTATAAAAGGAT
GCGCTGCACTGGTCGCATTTGTGGCGTCGTGTGCCCGCGTGGCGAACCAG
GTGATTCTTCAGATTAAAGGCCGTGGTCAGATGCTTGCCACATATGTGGC
ACACATGCTGGGACGCCGGCGGCCTGAGACACCGCTGTTTGTGAGTCTCC
AGCAGAATGTGATTGTGGAATTGGCTCTTGCACTTGGTGCAGGAGTGCGT
CAATGGAAGATTAATCATGTTGCAGTGCCGCGTAAGTGCGGCTGCTGATC
GGAAGCCCTCGTCACAGTGGTCACAGACGAATTTGGTATCTGGCGGGATG
TCGTGCAGATGGTATTTGTGCAGCTTCAGTTCGTCCACGTTTTCGAATTC
GAGGCCACACTTGCTGCACGTGTGGCTGGAGGAAGTGTCCCGATTATCGA
TAGCTTCACTTTCGGGTTCTGATTCGGGAGAGAGGCCCATGTCAAAGTGC
TCATTCGACAACTGGCTATCTGTTGAAAGTTCTGG
BO05007.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-PA | 1341 | CG31388-RA | 472..1338 | 885..19 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-RA | 1472 | CG31388-RA | 526..1392 | 885..19 | 4335 | 100 | Minus |
CG31388-RB | 1562 | CG31388-RB | 818..1482 | 683..19 | 3325 | 100 | Minus |
CG31388-RB | 1562 | CG31388-RB | 526..729 | 885..682 | 1020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11239110..11239434 | 598..274 | 1625 | 100 | Minus |
3R | 32079331 | 3R | 11238407..11238609 | 885..683 | 1015 | 100 | Minus |
3R | 32079331 | 3R | 11239895..11240034 | 158..19 | 700 | 100 | Minus |
3R | 32079331 | 3R | 11239509..11239627 | 276..158 | 595 | 100 | Minus |
3R | 32079331 | 3R | 11238957..11239041 | 682..598 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:42:54 has no hits.
BO05007.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:00 Download gff for
BO05007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-PA | 472..1341 | 16..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:36 Download gff for
BO05007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-PA | 472..1341 | 16..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:23 Download gff for
BO05007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 526..1398 | 11..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:05 Download gff for
BO05007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 526..1398 | 11..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:05 Download gff for
BO05007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11238407..11238609 | 683..885 | 100 | -> | Minus |
3R | 11238957..11239041 | 598..682 | 100 | -> | Minus |
3R | 11239111..11239433 | 275..597 | 100 | -> | Minus |
3R | 11239511..11239627 | 158..274 | 100 | -> | Minus |
3R | 11239896..11240038 | 15..157 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:23 Download gff for
BO05007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7064679..7064763 | 598..682 | 100 | -> | Minus |
arm_3R | 7064129..7064331 | 683..885 | 100 | -> | Minus |
arm_3R | 7064833..7065155 | 275..597 | 100 | -> | Minus |
arm_3R | 7065233..7065349 | 158..274 | 100 | -> | Minus |
arm_3R | 7065618..7065760 | 15..157 | 98 | -> | Minus |
BO05007.5prime Sequence
929 bp (792 high quality bases) assembled on 2005-12-02
> BO05007.5prime
GAAGTTATCAGTCGACATGAGGTACATTTGCAGGACCTGTTCTCGTATGG
CTGATCCTGCGGTAGCCAAGAATCTCTTCGATCCATCGAGTTCTTCCGTT
TTGCGTCAAATAGAGACTCTAACTAACTTGCAGCTAAAAGAGGACGGCAA
GTTGCCCAGGTTCATGTGCCAGGACTGCCAGCACGACCTGCAGATTGCCA
TCGATTTCCGCCGCGTTTGCATCGAGGCCCAGGAGCTCCTTGAACTTCAG
CTAAGGCAGGTGGAAAAGGAGGAGGAGGCGTTCGAGAGCCTGGCGGAGCA
ATGGCTGGATGATTGTCCGGATGAGTTGTCCAACTTGTCGCCAGTGCTAC
AGCTGAATGATCGCATGGATTTTATCTTCGATCCCGAGCCACAGGATAAG
AATACGGATGAGTTGGCTTCCATAAAGACCACGACAACAACAGAGTATAT
GAATGCATACCAGTCAGTGGCCAGTCCGCAATCTTCTCCAGAACTTTCAA
CAGATAGCCAGTTGTCGAATGAGCACTTTGACATGGGCCTCTCTCCCGAA
TCAGAACCCGAAAGTGAAGCTATCGATAATCGGGACACTTCCTCCAGCCA
CACGTGCAGCAAGTGTGGCCTCGAATTCGAAAACGTGGACGAACTGAAGC
TGCACAAATACCATCTGCACGACATCCCGCCAGATACCAAATTCGTCTGT
GACCACTGTGACGAGGGCTTCCGATCAGCAGCCGCACTTACGCGGCACTG
CAACATGATTAATCTTCCATTGACGCACTCCTGCACCAAGTGCAAGAGCC
AATTCCACAATCACATTCTGCTGGAGACTCACAAACAGCGGTGTCTCAGG
CCGCCGGCGTCCCAGCATGTGTGCCACATATGTGGCAAGCATCTGACCAC
GGCCTTTAATCTGAAAAATCCCCTGGGTT
BO05007.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-PA | 1341 | CG31388-RA | 1..910 | 17..926 | 4500 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-RA | 1472 | CG31388-RA | 54..964 | 16..926 | 4525 | 99.8 | Plus |
CG31388-RB | 1562 | CG31388-RB | 54..729 | 16..691 | 3380 | 100 | Plus |
CG31388-RB | 1562 | CG31388-RB | 818..1054 | 690..926 | 1155 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:46:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11238047..11238609 | 128..690 | 2815 | 100 | Plus |
3R | 32079331 | 3R | 11239110..11239261 | 775..926 | 730 | 98.7 | Plus |
3R | 32079331 | 3R | 11237868..11237985 | 16..133 | 590 | 100 | Plus |
3R | 32079331 | 3R | 11238957..11239041 | 691..775 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:46:03 has no hits.
BO05007.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:01 Download gff for
BO05007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-PA | 1..912 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:37 Download gff for
BO05007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-PA | 1..912 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:35:20 Download gff for
BO05007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 51..966 | 10..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:54 Download gff for
BO05007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 51..966 | 10..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:54 Download gff for
BO05007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11237865..11237985 | 10..133 | 97 | -> | Plus |
3R | 11238053..11238609 | 134..690 | 100 | -> | Plus |
3R | 11238957..11239041 | 691..775 | 100 | -> | Plus |
3R | 11239111..11239263 | 776..929 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:35:20 Download gff for
BO05007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7063587..7063707 | 10..133 | 97 | -> | Plus |
arm_3R | 7063775..7064331 | 134..690 | 100 | -> | Plus |
arm_3R | 7064679..7064763 | 691..775 | 100 | -> | Plus |
arm_3R | 7064833..7064985 | 776..929 | 98 | | Plus |
BO05007.complete Sequence
1372 bp (1372 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629936
> BO05007.complete
GAAGTTATCAGTCGACATGAGGTACATTTGCAGGACCTGTTCTCGTATGG
CTGATCCTGCGGTAGCCAAGAATCTCTTCGATCCATCGAGTTCTTCCGTT
TTGCGTCAAATAGAGACTCTAACTAACTTGCAGCTAAAAGAGGACGGCAA
GTTGCCCAGGTTCATGTGCCAGGACTGCCAGCACGACCTGCAGATTGCCA
TCGATTTCCGCCGCGTTTGCATCGAGGCCCAGGAGCTCCTTGAACTTCAG
CTAAGGCAGGTGGAAAAGGAGGAGGAGGCGTTCGAGAGCCTGGCGGAGCA
ATGGCTGGATGATTGTCCGGATGAGTTGTCCAACTTGTCGCCAGTGCTAC
AGCTGAATGATCGCATGGATTTTATCTTCGATCCCGAGCCACAGGATAAG
AATACGGATGAGTTGGCTTCCATAAAGACCACGACAACAACAGAGTATAT
GAATGCATACCAGTCAGTGGCCAGTCCGCAATCTTCTCCAGAACTTTCAA
CAGATAGCCAGTTGTCGAATGAGCACTTTGACATGGGCCTCTCTCCCGAA
TCAGAACCCGAAAGTGAAGCTATCGATAATCGGGACACTTCCTCCAGCCA
CACGTGCAGCAAGTGTGGCCTCGAATTCGAAAACGTGGACGAACTGAAGC
TGCACAAATACCATCTGCACGACATCCCGCCAGATACCAAATTCGTCTGT
GACCACTGTGACGAGGGCTTCCGATCAGCAGCCGCACTTACGCGGCACTG
CAACATGATTAATCTTCCATTGACGCACTCCTGCACCAAGTGCAAGAGCC
AATTCCACAATCACATTCTGCTGGAGACTCACAAACAGCGGTGTCTCAGG
CCGCCGGCGTCCCAGCATGTGTGCCACATATGTGGCAAGCATCTGACCAC
GGCCTTTAATCTGAAGAATCACCTGGTTCGCCACGCGGGCACACGACGCC
ACAAATGCGACCAGTGCAGCGCATCCTTTTATACAGCCGCCGAACTCTGT
TCCCATCAGAAAACCCACACAACCGAGCGTCCCTACATCTGTCGCTACAA
CTGTGGCAAAACCTTTCGCTTTTGCAGCGCCCGCAGCATGCATGAAAGGG
TTCACATGGACGCCAGCAAGCGTATCTACCAGTGCGAGTACTGCCCCAAG
TCGTATGTAACACCCAGCGAGTGCAGGACACATCAAAAGTATCACAACTT
GACTCGCGATCACGGCTGCGAAATCTGCCGCATAAGCTTCAAGACAGCCA
AACACTACAGATCCCATCTGAAGTCCAATGCCCACAAAACTCTGGAGGCG
CGTGCTAAAGCTGCTGCATCCCCCAATTCCCGTGGAAGAAATTGTTCAAC
GAATGCAAGCTTTCTAGACCAT
BO05007.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-RA | 1341 | CG31388-PA | 1..1338 | 17..1354 | 6690 | 100 | Plus |
CG31388-RB | 741 | CG31388-PB | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-RA | 1472 | CG31388-RA | 54..1392 | 16..1354 | 6695 | 100 | Plus |
CG31388-RB | 1562 | CG31388-RB | 54..729 | 16..691 | 3380 | 100 | Plus |
CG31388-RB | 1562 | CG31388-RB | 818..1482 | 690..1354 | 3325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11238047..11238609 | 128..690 | 2815 | 100 | Plus |
3R | 32079331 | 3R | 11239110..11239434 | 775..1099 | 1625 | 100 | Plus |
3R | 32079331 | 3R | 11239895..11240034 | 1215..1354 | 700 | 100 | Plus |
3R | 32079331 | 3R | 11239509..11239627 | 1097..1215 | 595 | 100 | Plus |
3R | 32079331 | 3R | 11237868..11237985 | 16..133 | 590 | 100 | Plus |
3R | 32079331 | 3R | 11238957..11239041 | 691..775 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:35:36 has no hits.
BO05007.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:53 Download gff for
BO05007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 1..1341 | 17..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:58:37 Download gff for
BO05007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 55..1392 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:26 Download gff for
BO05007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 55..1392 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:54 Download gff for
BO05007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 51..1398 | 10..1362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:12 Download gff for
BO05007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 55..1392 | 17..1356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:12 Download gff for
BO05007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11237869..11237985 | 17..133 | 100 | -> | Plus |
3R | 11238053..11238609 | 134..690 | 100 | -> | Plus |
3R | 11238957..11239041 | 691..775 | 100 | -> | Plus |
3R | 11239111..11239433 | 776..1098 | 100 | -> | Plus |
3R | 11239511..11239627 | 1099..1215 | 100 | -> | Plus |
3R | 11239896..11240034 | 1216..1356 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:26 Download gff for
BO05007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7063591..7063707 | 17..133 | 100 | -> | Plus |
arm_3R | 7064833..7065155 | 776..1098 | 100 | -> | Plus |
arm_3R | 7065233..7065349 | 1099..1215 | 100 | -> | Plus |
arm_3R | 7063775..7064331 | 134..690 | 100 | -> | Plus |
arm_3R | 7064679..7064763 | 691..775 | 100 | -> | Plus |
arm_3R | 7065618..7065756 | 1216..1356 | 98 | | Plus |
BO05007.pep Sequence
Translation from 16 to 1372
> BO05007.pep
MRYICRTCSRMADPAVAKNLFDPSSSSVLRQIETLTNLQLKEDGKLPRFM
CQDCQHDLQIAIDFRRVCIEAQELLELQLRQVEKEEEAFESLAEQWLDDC
PDELSNLSPVLQLNDRMDFIFDPEPQDKNTDELASIKTTTTTEYMNAYQS
VASPQSSPELSTDSQLSNEHFDMGLSPESEPESEAIDNRDTSSSHTCSKC
GLEFENVDELKLHKYHLHDIPPDTKFVCDHCDEGFRSAAALTRHCNMINL
PLTHSCTKCKSQFHNHILLETHKQRCLRPPASQHVCHICGKHLTTAFNLK
NHLVRHAGTRRHKCDQCSASFYTAAELCSHQKTHTTERPYICRYNCGKTF
RFCSARSMHERVHMDASKRIYQCEYCPKSYVTPSECRTHQKYHNLTRDHG
CEICRISFKTAKHYRSHLKSNAHKTLEARAKAAASPNSRGRNCSTNASFL
DH
BO05007.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-PA | 446 | CG31388-PA | 1..446 | 1..446 | 2431 | 100 | Plus |
CG31388-PB | 246 | CG31388-PB | 1..227 | 1..227 | 1182 | 99.1 | Plus |
CG8319-PA | 383 | CG8319-PA | 1..368 | 1..417 | 322 | 24.6 | Plus |
CG6689-PA | 613 | CG6689-PA | 167..598 | 5..424 | 302 | 24.9 | Plus |
Meics-PB | 571 | CG8474-PB | 21..474 | 5..452 | 301 | 24.1 | Plus |