Clone Sequence Records
BO05009.3prime Sequence
935 bp (828 high quality bases) assembled on 2005-12-02
> BO05009.3prime
ATGGTCTAGAAAGCTTGCCCTGGCCAGCGGCTCGAGCATCTCGAGGAACA
GTTTCTTCATGGTAATGACTTCATCGCGTGCAATTCCACGCCAAAATCTT
CGCAGGATATCATCCGCCTGCCGCAGCGAAGGCAGCAAAAGCAGCAATTG
TTGCTGATGCGACACGGCCGACGAATGACGCAGCAAGTAGACCACATCGT
TTAGAGAATTAAGAATCGTATCACGAAATGCGCGCAGGGAACTCTGATCA
TCCAGCAGAATGTCGCAGTTGGCCAGCAGGAGCGCCTTTAGCAAGTAGTA
CTCCTCCCTTCGTGGCGATATTCTTTCCATGCGCTGTGCGATCTGGACGC
AGTGGTAGTAGAACTCCGTGTAACCGCACTCCTTGGCCAAATGTTCATCC
ATCCAGACATCCGTGGCGAAGCATAACTTGCCATTGAACGGTAGGGACCG
GAAGGTCAGCTGGAGCGTCAGGATCTCTGCCCACGACACCTGGAGAAGCT
TCATCTGGTCGTTAAGTGGCAGATCTATAAAGCCAGGTATCTGCTTGGCC
CAGCCAATGACGCTGACCAATTCCTTGTCGTAAATATCACTAAGGACGCT
TAGTATCTCATTGGGATCATTGTTGTTGTTGTTTTGGAAAATGCAAGTCC
CATTGGGCGTAACAACGCTGGACTCCAGTTTTATGCTGCCCGAGGAGGAT
GAGGCCTCATCATTAGTTATGCTAGTCGTGTGGACTTGCGGCGGCGGCGT
TTGGACGCTCAAGGCATCCGGCTCATATGAATTGAGCACCTCCAGTATCT
TGACATCGCACAGCGAGGTGGTGTTGGATTGGTATAGCAGCTGCATAGTC
TGGTAAGAGTTTGATACAGGATTCCTTCGGTACTTCTGCCGTCCTCCACG
AACTCGATCCAAGCGCACACCCTCCTTGAGCATGC
BO05009.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7404-PA | 1455 | ERR-RA | 536..1452 | 935..19 | 4585 | 100 | Minus |
| CG7404-PB | 1491 | ERR-RB | 572..1488 | 935..19 | 4585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ERR-RB | 1730 | CG7404-RB | 653..1569 | 935..19 | 4585 | 100 | Minus |
| ERR-RA | 2119 | CG7404-RA | 1042..1958 | 935..19 | 4585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:28:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8183522..8184429 | 19..926 | 4540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:28:13 has no hits.
BO05009.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:04 Download gff for
BO05009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ERR-PB | 572..1491 | 16..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:41 Download gff for
BO05009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7404-PB | 572..1491 | 16..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:08:40 Download gff for
BO05009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ERR-RA | 1042..1962 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:45 Download gff for
BO05009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ERR-RA | 1042..1962 | 15..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:45 Download gff for
BO05009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8183517..8184431 | 15..929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:08:40 Download gff for
BO05009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8176617..8177531 | 15..929 | 99 | | Plus |
BO05009.5prime Sequence
861 bp (834 high quality bases) assembled on 2005-12-02
> BO05009.5prime
GAAGTTATCAGTCGACATGTCCGACGGCGTCAGCATCTTGCACATCAAAC
AGGAGGTGGACACTCCATCGGCGTCCTGCTTTAGTCCCAGCTCCAAGTCA
ACGGCCACGCAGAGTGGCACAAACGGCCTGAAATCCTCGCCCTCGGTTTC
GCCGGAAAGGCAGCTCTGCAGCTCGACGACCTCTCTATCCTGCGATTTGC
ACAATGTATCCTTAAGCAATGATGGCGATAGTCTGAAAGGAAGTGGTACA
AGTGGCGGCAATGGCGGAGGAGGAGGTGGTGGTACGAGTGGTGGAAATGC
GACCAATGCGAGTGCCGGAGCTGGATCGGGATCCGTCAGGGACGAGCTCC
GCCGATTGTGTTTGGTTTGTGGCGATGTGGCCAGTGGATTCCACTATGGT
GTGGCGAGTTGTGAGGCTTGCAAAGCGTTCTTTAAACGCACCATCCAAGG
CAACATCGAGTACACGTGTCCGGCGAACAACGAGTGTGAGATTAACAAGC
GGAGACGCAAGGCCTGCCAAGCGTGTCGCTTCCAGAAATGTCTACTAATG
GGCATGCTCAAGGAGGGTGTGCGCTTGGATCGAGTTCGTGGAGGACGGCA
GAAGTACCGAAGGAATCCTGTATCAAACTCTTACCAGACTATGCAGCTGC
TATACCAATCCAACACCACCTCGCTGTGCGATGTCAAGATACTGGAGGTG
CTCAATTCATATGAGCCGGATGCCTTGAGCGTCCAAACGCCGCCGCCGCA
AGTCCACACGACTAGCATAACTAATGATGAGGCCTCATCCTCCTCGGGCA
GCATAAAACTGGAGTCCAGCGTTGTTACGCCCAATGGGACTTGCATTTTC
CAAACAACAAC
BO05009.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7404-PB | 1491 | ERR-RB | 35..874 | 15..854 | 4200 | 100 | Plus |
| CG7404-PA | 1455 | ERR-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ERR-RB | 1730 | CG7404-RB | 116..963 | 15..861 | 4215 | 99.9 | Plus |
| ERR-RA | 2119 | CG7404-RA | 505..1352 | 15..861 | 4215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8184483..8185031 | 563..15 | 2745 | 100 | Minus |
| 3L | 28110227 | 3L | 8184136..8184429 | 854..561 | 1470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:17:09 has no hits.
BO05009.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:05 Download gff for
BO05009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ERR-PB | 30..882 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:42 Download gff for
BO05009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7404-PB | 30..882 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:51 Download gff for
BO05009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ERR-RA | 500..1352 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:38:13 Download gff for
BO05009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ERR-RA | 500..1352 | 9..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:38:13 Download gff for
BO05009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8184128..8184427 | 563..861 | 99 | <- | Minus |
| 3L | 8184484..8185036 | 9..562 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:51 Download gff for
BO05009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8177228..8177527 | 563..861 | 99 | <- | Minus |
| arm_3L | 8177584..8178136 | 9..562 | 99 | | Minus |
BO05009.complete Sequence
1486 bp (1486 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629937
> BO05009.complete
GAAGTTATCAGTCGACATGTCCGACGGCGTCAGCATCTTGCACATCAAAC
AGGAGGTGGACACTCCATCGGCGTCCTGCTTTAGTCCCAGCTCCAAGTCA
ACGGCCACGCAGAGTGGCACAAACGGCCTGAAATCCTCGCCCTCGGTTTC
GCCGGAAAGGCAGCTCTGCAGCTCGACGACCTCTCTATCCTGCGATTTGC
ACAATGTATCCTTAAGCAATGATGGCGATAGTCTGAAAGGAAGTGGTACA
AGTGGCGGCAATGGCGGAGGAGGAGGTGGTGGTACGAGTGGTGGAAATGC
GACCAATGCGAGTGCCGGAGCTGGATCGGGATCCGTCAGGGACGAGCTCC
GCCGATTGTGTTTGGTTTGTGGCGATGTGGCCAGTGGATTCCACTATGGT
GTGGCGAGTTGTGAGGCTTGCAAAGCGTTCTTTAAACGCACCATCCAAGG
CAACATCGAGTACACGTGTCCGGCGAACAACGAGTGTGAGATTAACAAGC
GGAGACGCAAGGCCTGCCAAGCGTGTCGCTTCCAGAAATGTCTACTAATG
GGCATGCTCAAGGAGGGTGTGCGCTTGGATCGAGTTCGTGGAGGACGGCA
GAAGTACCGAAGGAATCCTGTATCAAACTCTTACCAGACTATGCAGCTGC
TATACCAATCCAACACCACCTCGCTGTGCGATGTCAAGATACTGGAGGTG
CTCAATTCATATGAGCCGGATGCCTTGAGCGTCCAAACGCCGCCGCCGCA
AGTCCACACGACTAGCATAACTAATGATGAGGCCTCATCCTCCTCGGGCA
GCATAAAACTGGAGTCCAGCGTTGTTACGCCCAATGGGACTTGCATTTTC
CAAAACAACAACAACAATGATCCCAATGAGATACTAAGCGTCCTTAGTGA
TATTTACGACAAGGAATTGGTCAGCGTCATTGGCTGGGCCAAGCAGATAC
CTGGCTTTATAGATCTGCCACTTAACGACCAGATGAAGCTTCTCCAGGTG
TCGTGGGCAGAGATCCTGACGCTCCAGCTGACCTTCCGGTCCCTACCGTT
CAATGGCAAGTTATGCTTCGCCACGGATGTCTGGATGGATGAACATTTGG
CCAAGGAGTGCGGTTACACGGAGTTCTACTACCACTGCGTCCAGATCGCA
CAGCGCATGGAAAGAATATCGCCACGAAGGGAGGAGTACTACTTGCTAAA
GGCGCTCCTGCTGGCCAACTGCGACATTCTGCTGGATGATCAGAGTTCCC
TGCGCGCATTTCGTGATACGATTCTTAATTCTCTAAACGATGTGGTCTAC
TTGCTGCGTCATTCGTCGGCCGTGTCGCATCAGCAACAATTGCTGCTTTT
GCTGCCTTCGCTGCGGCAGGCGGATGATATCCTGCGAAGATTTTGGCGTG
GAATTGCACGCGATGAAGTCATTACCATGAAGAAACTGTTCCTCGAGATG
CTCGAGCCGCTGGCCAGGGCAAGCTTTCTAGACCAT
BO05009.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:53:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ERR-RB | 1491 | CG7404-PB | 35..1488 | 15..1468 | 7270 | 100 | Plus |
| ERR-RA | 1455 | CG7404-PA | 1..1452 | 17..1468 | 7260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ERR-RB | 1730 | CG7404-RB | 116..1569 | 15..1468 | 7270 | 100 | Plus |
| ERR-RA | 2119 | CG7404-RA | 505..1958 | 15..1468 | 7270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8183522..8184429 | 1468..561 | 4540 | 100 | Minus |
| 3L | 28110227 | 3L | 8184483..8185031 | 563..15 | 2745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:53:34 has no hits.
BO05009.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:55 Download gff for
BO05009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ERR-RB | 30..1491 | 9..1471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:05:06 Download gff for
BO05009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ERR-RB | 107..1569 | 9..1472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:46 Download gff for
BO05009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ERR-RA | 507..1958 | 17..1470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:57 Download gff for
BO05009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ERR-RB | 107..1569 | 9..1472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:11 Download gff for
BO05009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ERR-RA | 507..1958 | 17..1470 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:11 Download gff for
BO05009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8183519..8184427 | 563..1470 | 99 | <- | Minus |
| 3L | 8184484..8185029 | 17..562 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:46 Download gff for
BO05009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8176619..8177527 | 563..1470 | 99 | <- | Minus |
| arm_3L | 8177584..8178129 | 17..562 | 100 | | Minus |
BO05009.pep Sequence
Translation from 16 to 1486
> BO05009.pep
MSDGVSILHIKQEVDTPSASCFSPSSKSTATQSGTNGLKSSPSVSPERQL
CSSTTSLSCDLHNVSLSNDGDSLKGSGTSGGNGGGGGGGTSGGNATNASA
GAGSGSVRDELRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYT
CPANNECEINKRRRKACQACRFQKCLLMGMLKEGVRLDRVRGGRQKYRRN
PVSNSYQTMQLLYQSNTTSLCDVKILEVLNSYEPDALSVQTPPPQVHTTS
ITNDEASSSSGSIKLESSVVTPNGTCIFQNNNNNDPNEILSVLSDIYDKE
LVSVIGWAKQIPGFIDLPLNDQMKLLQVSWAEILTLQLTFRSLPFNGKLC
FATDVWMDEHLAKECGYTEFYYHCVQIAQRMERISPRREEYYLLKALLLA
NCDILLDDQSSLRAFRDTILNSLNDVVYLLRHSSAVSHQQQLLLLLPSLR
QADDILRRFWRGIARDEVITMKKLFLEMLEPLARASFLDH
BO05009.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ERR-PB | 496 | CG7404-PB | 13..496 | 1..484 | 2516 | 100 | Plus |
| ERR-PA | 484 | CG7404-PA | 1..484 | 1..484 | 2516 | 100 | Plus |
| ftz-f1-PC | 803 | CG4059-PC | 200..366 | 36..197 | 338 | 41.9 | Plus |
| ftz-f1-PA | 803 | CG4059-PA | 200..366 | 36..197 | 338 | 41.9 | Plus |
| ftz-f1-PD | 853 | CG4059-PD | 200..366 | 36..197 | 338 | 41.9 | Plus |
