Clone BO05012 Report

Search the DGRC for BO05012

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:12
Vector:pDNR-Dual
Associated Gene/Transcriptpad-RB
Protein status:BO05012.pep: Imported from assembly
Sequenced Size:2806

Clone Sequence Records

BO05012.3prime Sequence

892 bp (779 high quality bases) assembled on 2005-12-02

> BO05012.3prime
ATGGTCTAGAAAGCTTGCCTTTGCGACTGATGCGCTGGGATTCTGGAACT
GAGAAAAGCCCAGCTGGACGTAATTGGCCAGAGATCCGGGCATATTGGAG
TCGGGAGCTTGTGTGATCGTTATTGTGTTTCCGGCCAGATCCTGGGTAGT
CACAACATGCATTACCTGGGCCGGTGGCTGCTGTGTTTGCGTCTGCTGAG
CAGAACGTTCTTGTTTGATTTCGAAAACCGCCTTATTGGGCACCTGACCA
TTGCTTCGAACGTGAGTTAGCGCAGGTGCTGCTGCAGGCGATGCAGTTGC
ACCCGGAGCCGCGCTTTCCGGTCGAATTTTCTTATGCATCTCCCGATGCT
TCTCGTAGTGCAACTTGGTGGCAAAGTTTTTGTTGCAAACATCGCAACAG
TATAAGGTTTCGGTTGATGTCTGCGTGTGAATTCGCCTATGCTTATTCAG
GTTATCCTTTCGCGAGAAGGGCTTTTTGCACACCTCGCACGTGTACATCT
TTTGTCCAGAATGGGATACTAAGTGCCGGGACAGGTGCTCTTTGCGGCTG
AAGGTCTTGTCGCAACCCTCTTCCGAACACTTAAAGGGTCGCAGGCCCGC
GTGCAGCTTAACGTGTTGGGTGAGGTGTTCTTTCTTTTTAAATTCACGCT
TACAGGTGGGGCATATGAGGCCAGAAGTTGTGGGCGCTTCGCTCCCAGAA
TGGGTCGCGTTCTGTCCTTCCTGCTGTGGAGAAAGGAAGGATCTGCTGCG
GCGGTCGCGCTGCTTTAACTTTCTGCCCTGAAATGTCCTGGTTCTCAGGA
GGCTTGCGTACGATCTTTTTATGCTGCGCCGCCAGCGGAGGTGGTTGTGC
TTGGCTTAGGGCGGAACGGACACAGGAATCGGCTGTGAAGCA

BO05012.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10309-PA 2778 CG10309-RA 2061..2775 733..19 3575 100 Minus
CG10309-PA 2778 CG10309-RA 1931..2062 864..733 635 99.2 Minus
CG10309-PA 2778 CG10309-RA 1902..1931 892..863 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
pad-RB 3276 CG10309-RB 1975..2848 892..19 4310 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16344406..16344864 892..434 2185 99.3 Minus
3R 32079331 3R 16345186..16345401 234..19 1080 100 Minus
3R 32079331 3R 16344925..16345128 434..231 1020 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:37:25 has no hits.

BO05012.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:08 Download gff for BO05012.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10309-PA 1903..2778 15..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:46 Download gff for BO05012.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10309-PA 1903..2778 15..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:43:52 Download gff for BO05012.3prime
Subject Subject Range Query Range Percent Splice Strand
pad-RB 1976..2853 11..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:01:39 Download gff for BO05012.3prime
Subject Subject Range Query Range Percent Splice Strand
pad-RB 1976..2853 11..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:01:39 Download gff for BO05012.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16345189..16345406 11..231 98   Minus
3R 16344407..16344864 434..891 99 -> Minus
3R 16344926..16345127 232..433 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:43:52 Download gff for BO05012.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12170129..12170586 434..891 99 -> Minus
arm_3R 12170648..12170849 232..433 100 -> Minus
arm_3R 12170911..12171128 11..231 98   Minus

BO05012.5prime Sequence

880 bp (823 high quality bases) assembled on 2005-12-02

> BO05012.5prime
GAAGTTATCAGTCGACATGGCTGCGGCCGGAAGCAACGTTCGCTGCATTA
ACTACTACGACCTGTGTCGCATCTGCACGGACAGCAGCGATCACAAGACG
AACATCTACTCACCCGAGGGACGCGCCAAGAATCTGAGCCAAAAGATACT
CGAGTGTCTCTCACTGCAGATCGATGAAAAGGATCGCTTGCCCAAAGTGG
TGTGCGCCCAGTGTGTGCAGTTGGTGGAGCAAATCCACGGACTTCGCGCC
ACTTGCCGTAACTCACAGACCATGCTAAACAACTGTCTCAATATTCGCCC
GGCGCCAAGCAGCGACAAGCTATACATTCGGGATGCGGTCGATGAAACTG
GGAAGAGCCTCAGTGTGGCGCAGTCAGCTCCACCAGTTCCTAATGGAGCT
CAGCAGTCCGGAAATCTCTTGAACAGCATAATCCAGGCGGTAAACATGCA
GCCCCAGCAGCAGTACACCATAACGATGGACAACGGGGTACAGCAGCAGC
AGCAGCAGCATCAAGCTATGCCGGAAGTTCAAATAAAAAGCGAAAGACAG
ACTGCTTTGGAAGAGTTTATACGCCTCAAGCCTGACATCAAGATAACGCC
GCTGGGGAAAAAGGAGCCCATATCGCCTGCCAAGCCCCAGCAGCAACATT
CTCTGCAGTCCCAGACAGTAACGCCTACCATAAACCCTACTCAGTTGCAG
TTACAACCGCAGCTAGGCGATCAACTGCAGCCTTTGTGGCAGCAGATTCA
ACAACTTCAGCTTCAGCAACAACTACAGCAACTGACCAACCAGCTGCAGG
CTACCACACAGTACTCCGTCGCTCANGATGATACGTCAAGTTCTGGCGAC
AGTAAAAAGCCAAAGTTGAACTTTGTGCTC

BO05012.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10309-PA 2778 CG10309-RA 157..867 170..880 3536 99.8 Plus
CG10309-PA 2778 CG10309-RA 1..153 17..169 765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
pad-RB 3276 CG10309-RB 77..940 17..880 4309 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16342601..16342988 165..552 1940 100 Plus
3R 32079331 3R 16343044..16343371 553..880 1629 99.7 Plus
3R 32079331 3R 16342394..16342550 17..173 770 99.4 Plus
Blast to na_te.dros performed 2015-02-13 01:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2353..2522 633..809 192 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6897 637..808 162 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6915 638..798 158 60.6 Plus

BO05012.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:10 Download gff for BO05012.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10309-PA 1..867 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:48 Download gff for BO05012.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10309-PA 1..867 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:08:45 Download gff for BO05012.5prime
Subject Subject Range Query Range Percent Splice Strand
pad-RB 77..940 17..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:11:56 Download gff for BO05012.5prime
Subject Subject Range Query Range Percent Splice Strand
pad-RB 77..940 17..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:11:56 Download gff for BO05012.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16342394..16342546 17..169 100 -> Plus
3R 16342606..16342988 170..552 100 -> Plus
3R 16343044..16343371 553..880 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:08:45 Download gff for BO05012.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12168116..12168268 17..169 100 -> Plus
arm_3R 12168328..12168710 170..552 100 -> Plus
arm_3R 12168766..12169093 553..880 99   Plus

BO05012.complete Sequence

2806 bp assembled on 2008-08-14

GenBank Submission: KX799526

> BO05012.complete
GAAGTTATCAGTCGACATGGCTGCGGCCGGAAGCAACGTTCGCTGCATTA
ACTACTACGACCTGTGTCGCATCTGCACGGACAGCAGCGATCACAAGACG
AACATCTACTCACCCGAGGGACGCGCCAAGAATCTGAGCCAAAAGATACT
CGAGTGTCTCTCACTGCAGATCGATGAAAAGGATCGCTTGCCCAAAGTGG
TGTGCGCCCAGTGTGTGCAGTTGGTGGAGCAAATCCACGGACTTCGCGCC
ACTTGCCGTAACTCACAGACCATGCTAAACAACTGTCTCAATATTCGCCC
GGCGCCAAGCAGCGACAAGCTATACATTCGGGATGCGGTCGATGAAACTG
GGAAGAGCCTCAGTGTGGCGCAGTCAGCTCCACCAGTTCCTAATGGAGCT
CAGCAGTCCGGAAATCTCTTGAACAGCATAATCCAGGCGGTAAACATGCA
GCCCCAGCAGCAGTACACCATAACGATGGACAACGGGGTACAGCAGCAGC
AGCAGCAGCATCAAGCTATGCCGGAAGTTCAAATAAAAAGCGAAAGACAG
ACTGCTTTGGAAGAGTTTATACGCCTCAAGCCTGACATCAAGATAACGCC
GCTGGGGAAAAAGGAGCCCATATCGCCTGCCAAGCCCCAGCAGCAACATT
CTCTGCAGTCCCAGACAGTAACGCCTACCATAAACCCTACTCAGTTGCAG
TTACAACCGCAGCTAGGCGATCAACTGCAGCCTTTGTGGCAGCAGATTCA
ACAACTTCAGCTTCAGCAACAACTACAGCAACTGACCAACCAGCTGCAGG
CTACCACACAGTACTCCGTCGCTCAGGATGATACGTCAAGTTCTGGCGAC
AGTAAAAAGCCAAAGTTGAACTTTGTGCTCTCTTCGCCTACAGCGCCCCA
GTTCACCACTTCAATGCCGCAATTCGGTGGCAGTCAGCCGCAAATACAGC
TGCAGTTGATGCCAGGTAGCGGAGGAGTGACAAGTGCAGGGACAGTTCCT
GCCCAGACGCAGCTAAATGCTGCTGCCCTGCTCTCCAGCCTGGCGGGTCC
GCAGTCGACAACCAACCTGCTGTCACCAAACAAGTGCTTTCTGCCTATCA
CCATTCGGGACGAGAATTCGGATCAGCAGATCGTGGCGCACATAGACACC
AAGAACCTAGTGTTGCCCACGACATACCAAGTACAGATGAAACTTCAGCC
TCAGCTGGCCACTGCGGATGGCCAGCCAATCATGCAGCTGACACCAACAT
CAATTCCGGCTACTCTGCAACTGACACCGCAAACATTGGGCAATCCAGGA
AGCGCCTTCCAGGGCACTACGGTGACGCAAAATCAATTTCTGGCGCCGCA
ACAACCGCTTACCCAACTTCCAAATACGGCACAAGTGACCTCTCAGCAAA
TTATTAGATCTCCACATACCAGCACCACCAATTCGCAGTTGGTGATACGG
AATGTGACCAATATTCCACCGACTCCCACCACGCCCACTAGCAGCAAGAA
AGCCCCCACTTTTAAAACGCCTTCTCCAAAGCAAAAACCGATGCCATCGC
CAAAGAGCAAAACTACTGTGGGGCCGTCCTCAGGTGGAAGCAATGGCACG
TCCACCAACGAGTTCAAGCGATTGATAACCCAGACAAAGCCACAACCGCA
GGTGAAGCAACAGCAGACCGCAGGACTCTCTGCGTCAGGCGCCCCGACAG
CGACATCAGCAAATCAAGCAGCCATGCAGCGGCTCTCCTCGAATACAACG
ATCACCAAGGTGCCCAAGCAGCCTGCTTCTTTGCCGGCACCAGCTCCCAC
ATCTAATCCCGCCAAACTGCCCATGCTGAACAAACAGAATATCACAATCA
GTCGAATCTCAATGCAGACAGCGCCAAAGGCGCAAAGTAAGCCCTCTACT
ACATCCCCAACTCCTGCTTCACAGCCGATTCCTGTGTCCGTTCCCGCCCT
AAGCCAAGCACAACCACCTCCGCTGGCGGCGCAGCATAAAAAGATCGTAC
GCAAGCCTCCTGAGAACCAGGACACTTCAGGGCAGAAAGTTAAAGCAGCG
CGACCGCCGCAGCAGATCCTTCCTTCTCCACAGCAGGAAGGACAGAACGC
GACCCATTCTGGGAGCGAAGCGCCCACAACTTCTGGCCTCATATGCCCCA
CCTGTAAGCGTGAATTTAAAAAGAAAGAACACCTCACCCAACACGTTAAG
CTGCACGCGGGCCTGCGACCCTTTAAGTGTTCGGAAGAGGGTTGCGACAA
GACCTTCAGCCGCAAAGAGCACCTGTCCCGGCACTTAGTATCCCATTCTG
GACAAAAGATGTACACGTGCGAGGTGTGCAAAAAGCCCTTCTCGCGAAAG
GATAACCTGAATAAGCATAGGCGAATTCACACGCAGACATCAACCGAAAC
CTTATACTGTTGCGATGTTTGCAACAAAAACTTTGCCACCAAGTTGCACT
ACGAGAAGCATCGGGAGATGCATAAGAAAATTCGACCGGAAAGCGCGGCT
CCGGGTGCAACTGCATCGCCTGCAGCAGCACCTGCGCTAACTCACGTTCG
AAGCAATGGTCAGGTGCCCAATAAGGCGGTTTTCGAAATCAAACAAGAAC
GTTCTGCTCAGCAGACGCAAACACAGCAGCCACCGGCCCAGGTAATGCAT
GTTGTGACTACCCAGGATCTGGCCGGAAACACAATAACGATCACACAAGC
TCCCGACTCCAATATGCCCGGATCTCTGGCCAATTACGTCCAGCTGGGCT
TTTCTCAGTTCCAGAATCCCAGCGCATCAGTCGCAAAGGCAAGCTTTCTA
GACCAT

BO05012.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
pad-RB 2775 CG10309-PB 1..2772 17..2788 13860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
pad-RB 3276 CG10309-RB 77..2848 17..2788 13860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16343044..16344864 553..2373 9105 100 Plus
3R 32079331 3R 16342601..16342988 165..552 1940 100 Plus
3R 32079331 3R 16345186..16345401 2573..2788 1080 100 Plus
3R 32079331 3R 16344925..16345128 2373..2576 1020 100 Plus
3R 32079331 3R 16342394..16342550 17..173 770 99.4 Plus
Blast to na_te.dros performed 2014-11-27 10:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2353..2522 633..809 192 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6897 637..808 162 57.3 Plus

BO05012.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:32 Download gff for BO05012.complete
Subject Subject Range Query Range Percent Splice Strand
pad-RA 77..2856 17..2796 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:30 Download gff for BO05012.complete
Subject Subject Range Query Range Percent Splice Strand
pad-RB 77..2848 17..2790 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:25 Download gff for BO05012.complete
Subject Subject Range Query Range Percent Splice Strand
pad-RA 77..2851 17..2790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:30 Download gff for BO05012.complete
Subject Subject Range Query Range Percent Splice Strand
pad-RB 77..2848 17..2790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:30 Download gff for BO05012.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16342394..16342546 17..169 100 -> Plus
3R 16342606..16342988 170..552 100 -> Plus
3R 16343044..16344864 553..2373 100 -> Plus
3R 16344926..16345127 2374..2575 100 -> Plus
3R 16345189..16345401 2576..2790 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:30 Download gff for BO05012.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12168116..12168268 17..169 100 -> Plus
arm_3R 12168328..12168710 170..552 100 -> Plus
arm_3R 12168766..12170586 553..2373 100 -> Plus
arm_3R 12170648..12170849 2374..2575 100 -> Plus
arm_3R 12170911..12171123 2576..2790 99   Plus

BO05012.pep Sequence

Translation from 16 to 2806

> BO05012.pep
MAAAGSNVRCINYYDLCRICTDSSDHKTNIYSPEGRAKNLSQKILECLSL
QIDEKDRLPKVVCAQCVQLVEQIHGLRATCRNSQTMLNNCLNIRPAPSSD
KLYIRDAVDETGKSLSVAQSAPPVPNGAQQSGNLLNSIIQAVNMQPQQQY
TITMDNGVQQQQQQHQAMPEVQIKSERQTALEEFIRLKPDIKITPLGKKE
PISPAKPQQQHSLQSQTVTPTINPTQLQLQPQLGDQLQPLWQQIQQLQLQ
QQLQQLTNQLQATTQYSVAQDDTSSSGDSKKPKLNFVLSSPTAPQFTTSM
PQFGGSQPQIQLQLMPGSGGVTSAGTVPAQTQLNAAALLSSLAGPQSTTN
LLSPNKCFLPITIRDENSDQQIVAHIDTKNLVLPTTYQVQMKLQPQLATA
DGQPIMQLTPTSIPATLQLTPQTLGNPGSAFQGTTVTQNQFLAPQQPLTQ
LPNTAQVTSQQIIRSPHTSTTNSQLVIRNVTNIPPTPTTPTSSKKAPTFK
TPSPKQKPMPSPKSKTTVGPSSGGSNGTSTNEFKRLITQTKPQPQVKQQQ
TAGLSASGAPTATSANQAAMQRLSSNTTITKVPKQPASLPAPAPTSNPAK
LPMLNKQNITISRISMQTAPKAQSKPSTTSPTPASQPIPVSVPALSQAQP
PPLAAQHKKIVRKPPENQDTSGQKVKAARPPQQILPSPQQEGQNATHSGS
EAPTTSGLICPTCKREFKKKEHLTQHVKLHAGLRPFKCSEEGCDKTFSRK
EHLSRHLVSHSGQKMYTCEVCKKPFSRKDNLNKHRRIHTQTSTETLYCCD
VCNKNFATKLHYEKHREMHKKIRPESAAPGATASPAAAPALTHVRSNGQV
PNKAVFEIKQERSAQQTQTQQPPAQVMHVVTTQDLAGNTITITQAPDSNM
PGSLANYVQLGFSQFQNPSASVAKASFLDH

BO05012.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
pad-PB 924 CG10309-PB 1..924 1..924 4774 100 Plus
Spps-PA 968 CG5669-PA 224..822 114..788 287 23.9 Plus
Spps-PB 985 CG5669-PB 224..822 114..788 287 23.9 Plus
Spps-PA 968 CG5669-PA 57..826 115..823 281 22.6 Plus
Spps-PB 985 CG5669-PB 57..826 115..823 281 22.6 Plus
crol-PH 686 CG14938-PH 87..384 539..856 277 26.7 Plus
crol-PC 756 CG14938-PC 87..383 539..856 271 27 Plus
crol-PH 686 CG14938-PH 354..586 710..923 253 30.2 Plus