Clone Sequence Records
BO05013.3prime Sequence
953 bp (857 high quality bases) assembled on 2005-12-02
> BO05013.3prime
ATGGTCTAGAAAGCTTGCCTCCCCGGCAGCTGGACCTTTTCGCAGGGAAT
GCCTGCACCTCAGCATATCGCATTTCAGGGCGTAGCGATGCTGGCAAACC
GGACACTCATGCGGCTTGAGCTGCAGGTGGTAGCCCTTAATGTGTTGAGA
CAATCCGTTGCGTCGCTTGAAGACCCGCTCACAGATGCCGCACTTGTGTT
GCCGCTCCGTCGAGTGGGTGATGTTATGCTGGCGTAGTCCGTTGAGCGAA
CCGAATGATTTTTTACAAATATTACACTCAAATACTTGGGTGGGCGTAAC
TTTCTTTTTCGAATTCATTGCCGTCTGCACCTTAGTTTTGGATTTTTTGG
GCCTGCAATTGAGTTCATGACGACGATACAGGCGCCAGTGGGCAAAGGCG
ATGGCCTGGCAGTGGCGACACTTGAAGCTCTGAAGGCGCCGATGGTTTTT
GAGCGACAACGATTGACATATGTATCGCATATGCTGGCGAAGACCCAAGC
GGGATCGAAAAAACTTTAGGCAACCAGAACAGCGTCCTGAAAAATTGGGT
ATTAACTTTACAAAGTGTGCTTTCTGACGACGGTGGTGGTGTAAGTTCTT
AAACTTTGAAAATCCCTTCCTGCACATCCGGCACACATAGGTTTTTCTGT
GCACCTTCCTTGGTGACTTCAGTTTTTTGCATTTCAGCTGCAACTTACGA
TACCTGTTAGCCAGTTTAGCGTAGCTAGCAGTCACTGCAACCAGTTGAGG
ATCAGGTGCGGGTGCTGACAGTTGAGTGGCTGTCGGTATAAGGTCTTTGT
GATGCAGGAAACTACTCTGCATATCTAGTATATCAATCTTTTTCCTAGGT
TGCTTGGATACAGGACTATTATGCCACTCCAACGGCCAGTATTCGGAATG
GTCAGTGGCCACAAGACCTCTGTTGCTTTCATTTTCATTGGAGGGGTCAT
GGT
BO05013.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10431-PA | 2151 | CG10431-RA | 1237..2148 | 930..19 | 4510 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10431-RB | 2670 | CG10431-RB | 1418..2353 | 953..19 | 4610 | 99.6 | Minus |
| CG10431-RA | 3355 | CG10431-RA | 1418..2353 | 953..19 | 4610 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18976184..18977119 | 953..19 | 4585 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:19:19 has no hits.
BO05013.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:11 Download gff for
BO05013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10431-PA | 1213..2151 | 15..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:50 Download gff for
BO05013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10431-PA | 1213..2151 | 15..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:53 Download gff for
BO05013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10431-RA | 1418..2356 | 15..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:42:17 Download gff for
BO05013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10431-RA | 1418..2356 | 15..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:42:17 Download gff for
BO05013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18976184..18977122 | 15..953 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:53 Download gff for
BO05013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18976184..18977122 | 15..953 | 99 | | Minus |
BO05013.5prime Sequence
925 bp (805 high quality bases) assembled on 2005-12-02
> BO05013.5prime
GAAGTTATCAGTCGACATGCCCGCCCACTGCGCCGTGATAAATTGCAGCC
ATAAGTATGTGCACGCGGGCAGCATTTCATTTCACAGATTTCCATTCAAA
CGGAAGGATCTTCTACAGAAATGGAAGGAATTTACCCAGAGGAGTGCTCA
GTGGATGCCCTCAAAATGGAGTGCGCTGTGCAGTCGGCACTTTGGTGATG
AGGACTTTAATTGCAGCAATAATCGGAAAACGCTTAAGAAAAATGCTGTG
CCATCAATTAGGGTTTCGGAAGATGACTCCATGAGTGGGCACTTGGAACA
GGTGTCCCCAAGCAATAGGCCAACGCACAAGCAAACTCTTTCTAGTGCCG
CCGAATCAGCAGCAACAGGTGTTAAAGCCACTTGCCGCTTTTGTGGTTCC
TCGGCCATCAATTGCTCCTCGTTTGACAAGAGTTTTGAGCTCTTTGGCAT
GATCCAGAAGTGCTTTCCTACGCTACAGATTCTTCAGGACGACACCTTGC
CCAAGGAAATATGCCAGGAGTGCTGCCTCCAATTGGAGCGCTTTTCCCAG
TTCATCGATGTGGTGATGTTGGCGCAGAGTGAATTGCAAAGAAAATACCG
CCGACAACTGAAAATCAAACAGGAACCCTTGGTTCGTGTGAAACAGGAGG
CCTGCGAGAGCTCGGACAATCTTTTTCCTGATGAACTGGACATGGGTTTG
GAGCAGGACGATGGCTGCGATCAGGAAGAAACTGAACAAAAGTTTCAGTT
CTGCGAGTTCCCTATGCTAAATGCCCAAGACATTATCAACAATTGTGATA
TCATGGAGATAATCAATCTGGACGATCCGTTTATCAATATTCCAGACGAT
GCGGATGTGGGACAGTCGGAGAGACTACAGCCTGGAAGAACGGCTAATGA
AATGCTGCAAAACGAACTCCTAACC
BO05013.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10431-PA | 2151 | CG10431-RA | 1..771 | 155..925 | 3830 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10431-RB | 2670 | CG10431-RB | 68..976 | 17..925 | 4530 | 99.9 | Plus |
| CG10431-RA | 3355 | CG10431-RA | 68..976 | 17..925 | 4530 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18974903..18975742 | 86..925 | 4185 | 99.9 | Plus |
| 2L | 23513712 | 2L | 18974777..18974847 | 17..87 | 355 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 13:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker | 7256 | Stalker STALKER 7256bp | 634..689 | 447..391 | 111 | 68.4 | Minus |
BO05013.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:12 Download gff for
BO05013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10431-PA | 1..771 | 155..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:51 Download gff for
BO05013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10431-PA | 1..771 | 155..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:43:55 Download gff for
BO05013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10431-RA | 68..976 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:06 Download gff for
BO05013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10431-RA | 68..976 | 17..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:06 Download gff for
BO05013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18974777..18974847 | 17..87 | 100 | -> | Plus |
| 2L | 18974905..18975742 | 88..925 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:43:55 Download gff for
BO05013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18974777..18974847 | 17..87 | 100 | -> | Plus |
| arm_2L | 18974905..18975742 | 88..925 | 99 | | Plus |
BO05013.complete Sequence
2320 bp assembled on 2008-08-14
> BO05013.complete
GAAGTTATCAGTCGACATGCCCGCCCACTGCGCCGTGATAAATTGCAGCC
ATAAGTATGTGCACGCGGGCAGCATTTCATTTCACAGATTTCCATTCAAA
CGGAAGGATCTTCTACAGAAATGGAAGGAATTTACCCAGAGGAGTGCTCA
GTGGATGCCCTCAAAATGGAGTGCGCTGTGCAGTCGGCACTTTGGTGATG
AGGACTTTAATTGCAGCAATAATCGGAAAACGCTTAAGAAAAATGCTGTG
CCATCAATTAGGGTTTCGGAAGATGACTCCATGAGTGGGCACTTGGAACA
GGTGTCCCCAAGCAATAGGCCAACGCACAAGCAAACTCTTTCTAGTGCCG
CCGAATCAGCAGCAACAGGTGTTAAAGCCACTTGCCGCTTTTGTGGTTCC
TCGGCCATCAATTGCTCCTCGTTTGACAAGAGTTTTGAGCTCTTTGGCAT
GATCCAGAAGTGCTTTCCTACGCTACAGATTCTTCAGGACGACACCTTGC
CCAAGGAAATATGCCAGGAGTGCTGCCTCCAATTGGAGCGCTTTTCCCAG
TTCATCGATGTGGTGATGTTGGCGCAGAGTGAATTGCAAAGAAAATACCG
CCGACAACTGAAAATCAAACAGGAACCCTTGGTTCGTGTGAAACAGGAGG
CCTGCGAGAGCTCGGACAATCTTTTTCCTGATGAACTGGACATGGGTTTG
GAGCAGGACGATGGCTGCGATCAGGAAGAAACTGAACAAAAGTTTCAGTT
CTGCGAGTTCCCTATGCTAAATGCCCAAGACATTATCAACAATTGTGATA
TCATGGAGATAATCAATCTGGACGATCCGTTTATCAATATTCCAGACGAT
GCGGATGTGGGACAGTCGGAGAGACTACAGCCTGGAAGAACGGCTAATGA
AATGCTGCAAAACGAACTCCTAACCGAAGAGCACAATTATGCGAAGGAGG
AGTGGCAACTACCCCCGCATCAGTACAAAACGGAAAAGGTGGAGGGAACG
GATGCTGCGCCAGACGCAGCTCCTCCGCCTGCTGATCCCCCTCCTCTTCA
GGATAATATAGACCCTCCCTCGGCCCCCGAACCGCGCTCATGCAAGCCCA
TTGTGACCAATGTAAGCCAGATACCTAACCCAATGATCTGCGAGCTGCTG
CCACAGCCTGCTCCTCCCACGTCGATCAAACCCAACATCGTGGTACTTAA
CGATAGTGTGGTCGAATCCTCAGCGGCTTTTCGGCTTCACAACTGCACTT
TGTGCACTGCCAAATTTATAACAATAGATAGCTTAAATCAGCATTATGCA
CACAGTCACAGTAATTCCACTCCCATGGTTAGTGTTCCTCCGATGAATAT
ATGCCTTCCCAGCTTAACCATGAACCCTCCAATGAAAATGGAAAGCAACA
GAGGTCTTGTGGCCACTGAACAATCCGAATACTGGCCGTTGGAGTGGCAT
AATAGTCCTGTATCCAAGCAACCTAGGAAAAAGATTGATATACTAGATAT
GCAGAGTAGTTTCCTGCATCACAAAGACCTTATACCGACAGCCACTCAAC
TGTCAGCACCCGCACCTGATCCTCAACTGGTTGCAGTGACTGCTAGCTAC
GCTAAACTGGCTAACAGGTATCGTAAGTTGCAGCTGAAATGCAAAAAACT
GAAGTCACCAAGGAAGGTGCACAGAAAAACCTATGTGTGCCGGATGTGCA
GGAAGGGATTTTCAAAGTTTAAGAACTTACACCACCACCGTCGTCAGAAA
GCACACTTTGTAAAGTTAATACCCAATTTTTCAGGACGCTGTTCTGGTTG
CCTAAAGTTTTTTCGATCCCGCTTGGGTCTTCGCCAGCATATGCGATACA
TATGTCAATCGTTGTCGCTCAAAAACCATCGGCGCCTTCAGAGCTTCAAG
TGTCGCCACTGCCAGGCCATCGCCTTTGCCCACTGGCGCCTGTATCGTCG
TCATGAACTCAATTGCAGGCCCAAAAAATCCAAAACTAAGGTGCAGACGG
CAATGAATTCGAAAAAGAAAGTTACGCCCACCCAAGTATTTGAGTGTAAT
ATTTGTAAAAAATCATTCGGTTCGCTCAACGGACTACGCCAGCATAACAT
CACCCACTCGACGGAGCGGCAACACAAGTGCGGCATCTGTGAGCGGGTCT
TCAAGCGACGCAACGGATTGTCTCAACACATTAAGGGCTACCACCTGCAG
CTCAAGCCGCATGAGTGTCCGGTTTGCCAGCATCGCTACGCCCTGAAATG
CGATATGCTGAGGTGCAGGCATTCCCTGCGAAAAGGTCCAGCTGCCGGGG
AGGCAAGCTTTCTAGACCAT
BO05013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10431-RB | 2289 | CG10431-PB | 1..2286 | 17..2302 | 11415 | 100 | Plus |
| CG10431-RA | 2289 | CG10431-PA | 1..2286 | 17..2302 | 11415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10431-RB | 2670 | CG10431-RB | 68..2353 | 17..2302 | 11415 | 100 | Plus |
| CG10431-RA | 3355 | CG10431-RA | 68..2353 | 17..2302 | 11415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18974903..18977119 | 86..2302 | 11070 | 100 | Plus |
| 2L | 23513712 | 2L | 18974777..18974847 | 17..87 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:04:58 has no hits.
BO05013.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:09 Download gff for
BO05013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10431-RA | 68..2356 | 17..2306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:50:16 Download gff for
BO05013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10431-RA | 68..2353 | 17..2304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:55 Download gff for
BO05013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10431-RA | 68..2353 | 17..2304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:33 Download gff for
BO05013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10431-RA | 68..2353 | 17..2304 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:33 Download gff for
BO05013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18974777..18974847 | 17..87 | 100 | -> | Plus |
| 2L | 18974905..18977119 | 88..2304 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:50:16 Download gff for
BO05013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18974777..18974847 | 17..87 | 100 | -> | Plus |
| arm_2L | 18974905..18977119 | 88..2304 | 99 | | Plus |
BO05013.pep Sequence
Translation from 16 to 2320
> BO05013.pep
MPAHCAVINCSHKYVHAGSISFHRFPFKRKDLLQKWKEFTQRSAQWMPSK
WSALCSRHFGDEDFNCSNNRKTLKKNAVPSIRVSEDDSMSGHLEQVSPSN
RPTHKQTLSSAAESAATGVKATCRFCGSSAINCSSFDKSFELFGMIQKCF
PTLQILQDDTLPKEICQECCLQLERFSQFIDVVMLAQSELQRKYRRQLKI
KQEPLVRVKQEACESSDNLFPDELDMGLEQDDGCDQEETEQKFQFCEFPM
LNAQDIINNCDIMEIINLDDPFINIPDDADVGQSERLQPGRTANEMLQNE
LLTEEHNYAKEEWQLPPHQYKTEKVEGTDAAPDAAPPPADPPPLQDNIDP
PSAPEPRSCKPIVTNVSQIPNPMICELLPQPAPPTSIKPNIVVLNDSVVE
SSAAFRLHNCTLCTAKFITIDSLNQHYAHSHSNSTPMVSVPPMNICLPSL
TMNPPMKMESNRGLVATEQSEYWPLEWHNSPVSKQPRKKIDILDMQSSFL
HHKDLIPTATQLSAPAPDPQLVAVTASYAKLANRYRKLQLKCKKLKSPRK
VHRKTYVCRMCRKGFSKFKNLHHHRRQKAHFVKLIPNFSGRCSGCLKFFR
SRLGLRQHMRYICQSLSLKNHRRLQSFKCRHCQAIAFAHWRLYRRHELNC
RPKKSKTKVQTAMNSKKKVTPTQVFECNICKKSFGSLNGLRQHNITHSTE
RQHKCGICERVFKRRNGLSQHIKGYHLQLKPHECPVCQHRYALKCDMLRC
RHSLRKGPAAGEASFLDH
BO05013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10431-PB | 762 | CG10431-PB | 1..762 | 1..762 | 4120 | 99.9 | Plus |
| CG10431-PA | 762 | CG10431-PA | 1..762 | 1..762 | 4120 | 99.9 | Plus |
| CG6654-PA | 639 | CG6654-PA | 329..513 | 556..749 | 195 | 29.5 | Plus |
| CG15269-PA | 587 | CG15269-PA | 313..498 | 538..735 | 193 | 28 | Plus |
| CG17568-PA | 513 | CG17568-PA | 215..476 | 475..758 | 190 | 25 | Plus |
| CG6654-PA | 639 | CG6654-PA | 415..589 | 533..741 | 168 | 24.6 | Plus |
