Clone BO05014 Report

Search the DGRC for BO05014

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:14
Vector:pDNR-Dual
Associated Gene/Transcriptbsh-RB
Protein status:BO05014.pep: validated full length
Sequenced Size:1321

Clone Sequence Records

BO05014.3prime Sequence

827 bp (793 high quality bases) assembled on 2005-12-02

> BO05014.3prime
ATGGTCTAGAAAGCTTGCTGTTAACTGGTAGAGTTTCGCATCGCCGACGA
TGTCCACGTCGCTGGAGTTGTCCTCGTCGCCACTGTCCGCCTCCAGATCG
GAGTAGTCATCCGTGGAGTAACCCTGCTGCATCAGGCACATCTGCAGCTG
CTGCTCGCTCGTCGGCTGAGTGGGTGTGCCGCCGACAGATCCGGGATTCA
GTTTGCCGTGCTTGGAGTCCCCGGATGAGGAGGTGGCCTCGCCCGGCTGC
TTGCCCGGTTCGCTGCGTGAGAAGTCGACGGGCTCATTGGCATTGTCGCG
CCGGCGCAGCTGCTTTTTGTGCTTCATGCGGCGGTTCTGGAACCAGGTCT
TCACCTGCGTCTCGCTGAGTCCCAAGGCGGTGGCCAGCTCCACACGCTCC
GGCGTGGACAGGTATCGCTGTCCCTCGAACCGCTTTTCCAGACCGGACAG
CTGCGGATCACTGAACACCGTGCGAGCCTTCCTCCGGCGGCAGTGGCGCA
GGGCATTCACGCCCATTCCCAGTCCGAGGGCCAGTTCCGGCACACAGCCA
GGCGCTCCGAAGAAGGGCGCTCCCCCGAACAGGCTGGCTTGTGATAGAAA
ATAGGGATCCACGGACTTGTAGGTGCCCGACGACGGCGAGAGATATCCGA
GGGTCATTTGAAGAAATCCGTGATCGGTGTAGGGTGCATTCGGATAGAGT
ACTCCATTGGATGCACCACTACCTCCATTCAGGGGCGGCGGAGGCGGAGG
TTGAGGTTGAGTCGTGGGCACCGGCGGATGTTGTGCTGCTCCAGATCCCA
ACTGCTGCGAAATCTGATCTCCGTTGT

BO05014.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10604-PA 864 bsh-RA 53..861 827..19 4045 100 Minus
CG10604-PB 1290 bsh-RB 479..1287 827..19 4045 100 Minus
CG5832-PA 792 Hmx-RA 537..574 364..327 140 94.7 Minus
CG1897-PA 1548 Dr-RA 1384..1415 363..332 135 96.8 Minus
CG1264-PA 1890 lab-RA 1641..1667 346..320 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
bsh-RC 1503 CG10604-RC 617..1425 827..19 4045 100 Minus
bsh-RB 2012 CG10604-RB 617..1425 827..19 4045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19767048..19767352 285..589 1525 100 Plus
2L 23513712 2L 19766363..19766629 19..285 1335 100 Plus
2L 23513712 2L 19767740..19767979 588..827 1200 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:26:35 has no hits.

BO05014.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:13 Download gff for BO05014.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10604-PB 479..1290 18..827 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:52 Download gff for BO05014.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10604-PB 479..1290 18..827 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:17 Download gff for BO05014.3prime
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 617..1425 19..827 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:47:12 Download gff for BO05014.3prime
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 617..1425 19..827 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:47:12 Download gff for BO05014.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19766363..19766628 19..284 100 <- Plus
2L 19767048..19767350 285..587 100 <- Plus
2L 19767740..19767979 588..827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:17 Download gff for BO05014.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19766363..19766628 19..284 100 <- Plus
arm_2L 19767048..19767350 285..587 100 <- Plus
arm_2L 19767740..19767979 588..827 100   Plus

BO05014.5prime Sequence

859 bp (788 high quality bases) assembled on 2005-12-02

> BO05014.5prime
GAAGTTATCAGTCGACATGGCAATGCTTAATGAGGCCAGCTTGAGTCCTG
CGGACGCACATGCTCATGCCAACGCCACCACGCCCACGCACAGCAAGGCG
GCGGCGATGGCCAGTGCCACCACAATGCTGACCACAAAAACGCCGTTTTC
CATCGAGCACATATTGTTTCAAAACTTAAATAGTGCCAGCAATAACAATA
ATAGTAGTGATACCAACGGCATCGCCGCAAACACCAACAACTACGCGCCA
AAGAGCAGCAGAAACGCGGTGAAAAGTGCCAGAAGCGCATTTGCCCACGA
CAATAATCCGCACAAACATCCGTCGCAACATTCGCATCCGCCGCAGTCAC
ATCCGCCGGCGTCCGCATCCGCATCCGCGACGGCTACTGCCCGCAGCAAC
CAGGCTGCGTCGGGTTACGCTGGCGAGGATTACGGCAAGTCCATGCACAG
CACTCCACGGTCCAACCACCACTCGCGACACGGAACTTCCCACTACAACG
GAGATCAGATTTCGCAGCAGTTGGGATCTGGAGCAGCACAACATCCGCCG
GTGCCCACGACTCAACCTCAACCTCCGCCTCCGCCGCCCCTGAATGGAGG
TAGTGGTGCATCCAATGGAGTACTCTATCCGAATGCACCCTACACCGATC
ACGGATTTCTTCAAATGACCCTCGGATATCTCTCGCCGTCGTCGGGCACC
TACAAGTCCGTGGATCCCTATTTTCTATCACAAGCCAGCCTGTTCGGGGG
AGCGCCCTTCTTCGGAGCGCCTGGCTGTGTGCCGGAACTGGCCCTCGGAC
TGGGAATGGGCGTGAATGCCCTGCGCCACTGCCGCCGGAGGAAGGCTCGC
ACGGTGTTC

BO05014.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10604-PB 1290 bsh-RB 1..843 17..859 4215 100 Plus
CG10604-PA 864 bsh-RA 1..417 443..859 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
bsh-RC 1503 CG10604-RC 139..981 17..859 4215 100 Plus
bsh-RB 2012 CG10604-RB 139..981 17..859 4215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19768485..19768929 461..17 2225 100 Minus
2L 23513712 2L 19767740..19768015 734..459 1380 100 Minus
2L 23513712 2L 19767226..19767352 859..733 635 100 Minus
Blast to na_te.dros performed 2015-02-12 10:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6944 179..372 135 57.8 Plus

BO05014.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:14 Download gff for BO05014.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10604-PB 1..843 17..859 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:54 Download gff for BO05014.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10604-PB 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:54:29 Download gff for BO05014.5prime
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 132..981 9..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:10 Download gff for BO05014.5prime
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 132..981 9..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:10 Download gff for BO05014.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19767226..19767350 735..859 100 <- Minus
2L 19767740..19768014 460..734 100 <- Minus
2L 19768487..19768936 9..459 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:54:29 Download gff for BO05014.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19767226..19767350 735..859 100 <- Minus
arm_2L 19767740..19768014 460..734 100 <- Minus
arm_2L 19768487..19768936 9..459 99   Minus

BO05014.complete Sequence

1321 bp (1321 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629938

> BO05014.complete
GAAGTTATCAGTCGACATGGCAATGCTTAATGAGGCCAGCTTGAGTCCTG
CGGACGCACATGCTCATGCCAACGCCACCACGCCCACGCACAGCAAGGCG
GCGGCGATGGCCAGTGCCACCACAATGCTGACCACAAAAACGCCGTTTTC
CATCGAGCACATATTGTTTCAAAACTTAAATAGTGCCAGCAATAACAATA
ATAGTAGTGATACCAACGGCATCGCCGCAAACACCAACAACTACGCGCCA
AAGAGCAGCAGAAACGCGGTGAAAAGTGCCAGAAGCGCATTTGCCCACGA
CAATAATCCGCACAAACATCCGTCGCAACATTCGCATCCGCCGCAGTCAC
ATCCGCCGGCGTCCGCATCCGCATCCGCGACGGCTACTGCCCGCAGCAAC
CAGGCTGCGTCGGGTTACGCTGGCGAGGATTACGGCAAGTCCATGCACAG
CACTCCACGGTCCAACCACCACTCGCGACACGGAACTTCCCACTACAACG
GAGATCAGATTTCGCAGCAGTTGGGATCTGGAGCAGCACAACATCCGCCG
GTGCCCACGACTCAACCTCAACCTCCGCCTCCGCCGCCCCTGAATGGAGG
TAGTGGTGCATCCAATGGAGTACTCTATCCGAATGCACCCTACACCGATC
ACGGATTTCTTCAAATGACCCTCGGATATCTCTCGCCGTCGTCGGGCACC
TACAAGTCCGTGGATCCCTATTTTCTATCACAAGCCAGCCTGTTCGGGGG
AGCGCCCTTCTTCGGAGCGCCTGGCTGTGTGCCGGAACTGGCCCTCGGAC
TGGGAATGGGCGTGAATGCCCTGCGCCACTGCCGCCGGAGGAAGGCTCGC
ACGGTGTTCAGTGATCCGCAGCTGTCCGGTCTGGAAAAGCGGTTCGAGGG
ACAGCGATACCTGTCCACGCCGGAGCGTGTGGAGCTGGCCACCGCCTTGG
GACTCAGCGAGACGCAGGTGAAGACCTGGTTCCAGAACCGCCGCATGAAG
CACAAAAAGCAGCTGCGCCGGCGCGACAATGCCAATGAGCCCGTCGACTT
CTCACGCAGCGAACCGGGCAAGCAGCCGGGCGAGGCCACCTCCTCATCCG
GGGACTCCAAGCACGGCAAACTGAATCCCGGATCTGTCGGCGGCACACCC
ACTCAGCCGACGAGCGAGCAGCAGCTGCAGATGTGCCTGATGCAGCAGGG
TTACTCCACGGATGACTACTCCGATCTGGAGGCGGACAGTGGCGACGAGG
ACAACTCCAGCGACGTGGACATCGTCGGCGATGCGAAACTCTACCAGTTA
ACAGCAAGCTTTCTAGACCAT

BO05014.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
bsh-RC 1290 CG10604-PC 1..1287 17..1303 6435 100 Plus
bsh-RB 1290 CG10604-PB 1..1287 17..1303 6435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
bsh-RC 1503 CG10604-RC 139..1425 17..1303 6435 100 Plus
bsh-RB 2012 CG10604-RB 139..1425 17..1303 6435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19768485..19768929 461..17 2225 100 Minus
2L 23513712 2L 19767048..19767352 1037..733 1525 100 Minus
2L 23513712 2L 19767740..19768015 734..459 1380 100 Minus
2L 23513712 2L 19766363..19766629 1303..1037 1335 100 Minus
Blast to na_te.dros performed 2014-11-28 01:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6944 179..372 135 57.8 Plus

BO05014.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:52 Download gff for BO05014.complete
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 1..1290 17..1304 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:13 Download gff for BO05014.complete
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 132..1425 9..1303 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:53 Download gff for BO05014.complete
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 139..1425 17..1305 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:52 Download gff for BO05014.complete
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 132..1425 9..1303 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:27 Download gff for BO05014.complete
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 139..1425 17..1305 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:27 Download gff for BO05014.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19766361..19766628 1038..1305 99 <- Minus
2L 19767048..19767350 735..1037 100 <- Minus
2L 19767740..19768014 460..734 100 <- Minus
2L 19768487..19768929 17..459 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:53 Download gff for BO05014.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19766361..19766628 1038..1305 99 <- Minus
arm_2L 19767048..19767350 735..1037 100 <- Minus
arm_2L 19767740..19768014 460..734 100 <- Minus
arm_2L 19768487..19768929 17..459 100   Minus

BO05014.pep Sequence

Translation from 16 to 1321

> BO05014.pep
MAMLNEASLSPADAHAHANATTPTHSKAAAMASATTMLTTKTPFSIEHIL
FQNLNSASNNNNSSDTNGIAANTNNYAPKSSRNAVKSARSAFAHDNNPHK
HPSQHSHPPQSHPPASASASATATARSNQAASGYAGEDYGKSMHSTPRSN
HHSRHGTSHYNGDQISQQLGSGAAQHPPVPTTQPQPPPPPPLNGGSGASN
GVLYPNAPYTDHGFLQMTLGYLSPSSGTYKSVDPYFLSQASLFGGAPFFG
APGCVPELALGLGMGVNALRHCRRRKARTVFSDPQLSGLEKRFEGQRYLS
TPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRDNANEPVDFSRSEP
GKQPGEATSSSGDSKHGKLNPGSVGGTPTQPTSEQQLQMCLMQQGYSTDD
YSDLEADSGDEDNSSDVDIVGDAKLYQLTASFLDH

BO05014.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
bsh-PC 429 CG10604-PC 1..429 1..429 2269 100 Plus
bsh-PB 429 CG10604-PB 1..429 1..429 2269 100 Plus
Dbx-PC 741 CG42234-PC 249..495 94..335 252 31.5 Plus
Dll-PB 322 CG3629-PB 114..226 263..373 201 40.4 Plus
Dll-PA 327 CG3629-PA 114..226 263..373 201 40.4 Plus