Clone Sequence Records
BO05014.3prime Sequence
827 bp (793 high quality bases) assembled on 2005-12-02
> BO05014.3prime
ATGGTCTAGAAAGCTTGCTGTTAACTGGTAGAGTTTCGCATCGCCGACGA
TGTCCACGTCGCTGGAGTTGTCCTCGTCGCCACTGTCCGCCTCCAGATCG
GAGTAGTCATCCGTGGAGTAACCCTGCTGCATCAGGCACATCTGCAGCTG
CTGCTCGCTCGTCGGCTGAGTGGGTGTGCCGCCGACAGATCCGGGATTCA
GTTTGCCGTGCTTGGAGTCCCCGGATGAGGAGGTGGCCTCGCCCGGCTGC
TTGCCCGGTTCGCTGCGTGAGAAGTCGACGGGCTCATTGGCATTGTCGCG
CCGGCGCAGCTGCTTTTTGTGCTTCATGCGGCGGTTCTGGAACCAGGTCT
TCACCTGCGTCTCGCTGAGTCCCAAGGCGGTGGCCAGCTCCACACGCTCC
GGCGTGGACAGGTATCGCTGTCCCTCGAACCGCTTTTCCAGACCGGACAG
CTGCGGATCACTGAACACCGTGCGAGCCTTCCTCCGGCGGCAGTGGCGCA
GGGCATTCACGCCCATTCCCAGTCCGAGGGCCAGTTCCGGCACACAGCCA
GGCGCTCCGAAGAAGGGCGCTCCCCCGAACAGGCTGGCTTGTGATAGAAA
ATAGGGATCCACGGACTTGTAGGTGCCCGACGACGGCGAGAGATATCCGA
GGGTCATTTGAAGAAATCCGTGATCGGTGTAGGGTGCATTCGGATAGAGT
ACTCCATTGGATGCACCACTACCTCCATTCAGGGGCGGCGGAGGCGGAGG
TTGAGGTTGAGTCGTGGGCACCGGCGGATGTTGTGCTGCTCCAGATCCCA
ACTGCTGCGAAATCTGATCTCCGTTGT
BO05014.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10604-PA | 864 | bsh-RA | 53..861 | 827..19 | 4045 | 100 | Minus |
CG10604-PB | 1290 | bsh-RB | 479..1287 | 827..19 | 4045 | 100 | Minus |
CG5832-PA | 792 | Hmx-RA | 537..574 | 364..327 | 140 | 94.7 | Minus |
CG1897-PA | 1548 | Dr-RA | 1384..1415 | 363..332 | 135 | 96.8 | Minus |
CG1264-PA | 1890 | lab-RA | 1641..1667 | 346..320 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bsh-RC | 1503 | CG10604-RC | 617..1425 | 827..19 | 4045 | 100 | Minus |
bsh-RB | 2012 | CG10604-RB | 617..1425 | 827..19 | 4045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19767048..19767352 | 285..589 | 1525 | 100 | Plus |
2L | 23513712 | 2L | 19766363..19766629 | 19..285 | 1335 | 100 | Plus |
2L | 23513712 | 2L | 19767740..19767979 | 588..827 | 1200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:26:35 has no hits.
BO05014.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:13 Download gff for
BO05014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10604-PB | 479..1290 | 18..827 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:52 Download gff for
BO05014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10604-PB | 479..1290 | 18..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:17 Download gff for
BO05014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsh-RB | 617..1425 | 19..827 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:47:12 Download gff for
BO05014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsh-RB | 617..1425 | 19..827 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:47:12 Download gff for
BO05014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19766363..19766628 | 19..284 | 100 | <- | Plus |
2L | 19767048..19767350 | 285..587 | 100 | <- | Plus |
2L | 19767740..19767979 | 588..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:17 Download gff for
BO05014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19766363..19766628 | 19..284 | 100 | <- | Plus |
arm_2L | 19767048..19767350 | 285..587 | 100 | <- | Plus |
arm_2L | 19767740..19767979 | 588..827 | 100 | | Plus |
BO05014.5prime Sequence
859 bp (788 high quality bases) assembled on 2005-12-02
> BO05014.5prime
GAAGTTATCAGTCGACATGGCAATGCTTAATGAGGCCAGCTTGAGTCCTG
CGGACGCACATGCTCATGCCAACGCCACCACGCCCACGCACAGCAAGGCG
GCGGCGATGGCCAGTGCCACCACAATGCTGACCACAAAAACGCCGTTTTC
CATCGAGCACATATTGTTTCAAAACTTAAATAGTGCCAGCAATAACAATA
ATAGTAGTGATACCAACGGCATCGCCGCAAACACCAACAACTACGCGCCA
AAGAGCAGCAGAAACGCGGTGAAAAGTGCCAGAAGCGCATTTGCCCACGA
CAATAATCCGCACAAACATCCGTCGCAACATTCGCATCCGCCGCAGTCAC
ATCCGCCGGCGTCCGCATCCGCATCCGCGACGGCTACTGCCCGCAGCAAC
CAGGCTGCGTCGGGTTACGCTGGCGAGGATTACGGCAAGTCCATGCACAG
CACTCCACGGTCCAACCACCACTCGCGACACGGAACTTCCCACTACAACG
GAGATCAGATTTCGCAGCAGTTGGGATCTGGAGCAGCACAACATCCGCCG
GTGCCCACGACTCAACCTCAACCTCCGCCTCCGCCGCCCCTGAATGGAGG
TAGTGGTGCATCCAATGGAGTACTCTATCCGAATGCACCCTACACCGATC
ACGGATTTCTTCAAATGACCCTCGGATATCTCTCGCCGTCGTCGGGCACC
TACAAGTCCGTGGATCCCTATTTTCTATCACAAGCCAGCCTGTTCGGGGG
AGCGCCCTTCTTCGGAGCGCCTGGCTGTGTGCCGGAACTGGCCCTCGGAC
TGGGAATGGGCGTGAATGCCCTGCGCCACTGCCGCCGGAGGAAGGCTCGC
ACGGTGTTC
BO05014.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10604-PB | 1290 | bsh-RB | 1..843 | 17..859 | 4215 | 100 | Plus |
CG10604-PA | 864 | bsh-RA | 1..417 | 443..859 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bsh-RC | 1503 | CG10604-RC | 139..981 | 17..859 | 4215 | 100 | Plus |
bsh-RB | 2012 | CG10604-RB | 139..981 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19768485..19768929 | 461..17 | 2225 | 100 | Minus |
2L | 23513712 | 2L | 19767740..19768015 | 734..459 | 1380 | 100 | Minus |
2L | 23513712 | 2L | 19767226..19767352 | 859..733 | 635 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 10:13:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6944 | 179..372 | 135 | 57.8 | Plus |
BO05014.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:14 Download gff for
BO05014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10604-PB | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:54 Download gff for
BO05014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10604-PB | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:54:29 Download gff for
BO05014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsh-RB | 132..981 | 9..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:10 Download gff for
BO05014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsh-RB | 132..981 | 9..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:10 Download gff for
BO05014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19767226..19767350 | 735..859 | 100 | <- | Minus |
2L | 19767740..19768014 | 460..734 | 100 | <- | Minus |
2L | 19768487..19768936 | 9..459 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:54:29 Download gff for
BO05014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19767226..19767350 | 735..859 | 100 | <- | Minus |
arm_2L | 19767740..19768014 | 460..734 | 100 | <- | Minus |
arm_2L | 19768487..19768936 | 9..459 | 99 | | Minus |
BO05014.complete Sequence
1321 bp (1321 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629938
> BO05014.complete
GAAGTTATCAGTCGACATGGCAATGCTTAATGAGGCCAGCTTGAGTCCTG
CGGACGCACATGCTCATGCCAACGCCACCACGCCCACGCACAGCAAGGCG
GCGGCGATGGCCAGTGCCACCACAATGCTGACCACAAAAACGCCGTTTTC
CATCGAGCACATATTGTTTCAAAACTTAAATAGTGCCAGCAATAACAATA
ATAGTAGTGATACCAACGGCATCGCCGCAAACACCAACAACTACGCGCCA
AAGAGCAGCAGAAACGCGGTGAAAAGTGCCAGAAGCGCATTTGCCCACGA
CAATAATCCGCACAAACATCCGTCGCAACATTCGCATCCGCCGCAGTCAC
ATCCGCCGGCGTCCGCATCCGCATCCGCGACGGCTACTGCCCGCAGCAAC
CAGGCTGCGTCGGGTTACGCTGGCGAGGATTACGGCAAGTCCATGCACAG
CACTCCACGGTCCAACCACCACTCGCGACACGGAACTTCCCACTACAACG
GAGATCAGATTTCGCAGCAGTTGGGATCTGGAGCAGCACAACATCCGCCG
GTGCCCACGACTCAACCTCAACCTCCGCCTCCGCCGCCCCTGAATGGAGG
TAGTGGTGCATCCAATGGAGTACTCTATCCGAATGCACCCTACACCGATC
ACGGATTTCTTCAAATGACCCTCGGATATCTCTCGCCGTCGTCGGGCACC
TACAAGTCCGTGGATCCCTATTTTCTATCACAAGCCAGCCTGTTCGGGGG
AGCGCCCTTCTTCGGAGCGCCTGGCTGTGTGCCGGAACTGGCCCTCGGAC
TGGGAATGGGCGTGAATGCCCTGCGCCACTGCCGCCGGAGGAAGGCTCGC
ACGGTGTTCAGTGATCCGCAGCTGTCCGGTCTGGAAAAGCGGTTCGAGGG
ACAGCGATACCTGTCCACGCCGGAGCGTGTGGAGCTGGCCACCGCCTTGG
GACTCAGCGAGACGCAGGTGAAGACCTGGTTCCAGAACCGCCGCATGAAG
CACAAAAAGCAGCTGCGCCGGCGCGACAATGCCAATGAGCCCGTCGACTT
CTCACGCAGCGAACCGGGCAAGCAGCCGGGCGAGGCCACCTCCTCATCCG
GGGACTCCAAGCACGGCAAACTGAATCCCGGATCTGTCGGCGGCACACCC
ACTCAGCCGACGAGCGAGCAGCAGCTGCAGATGTGCCTGATGCAGCAGGG
TTACTCCACGGATGACTACTCCGATCTGGAGGCGGACAGTGGCGACGAGG
ACAACTCCAGCGACGTGGACATCGTCGGCGATGCGAAACTCTACCAGTTA
ACAGCAAGCTTTCTAGACCAT
BO05014.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bsh-RC | 1290 | CG10604-PC | 1..1287 | 17..1303 | 6435 | 100 | Plus |
bsh-RB | 1290 | CG10604-PB | 1..1287 | 17..1303 | 6435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bsh-RC | 1503 | CG10604-RC | 139..1425 | 17..1303 | 6435 | 100 | Plus |
bsh-RB | 2012 | CG10604-RB | 139..1425 | 17..1303 | 6435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19768485..19768929 | 461..17 | 2225 | 100 | Minus |
2L | 23513712 | 2L | 19767048..19767352 | 1037..733 | 1525 | 100 | Minus |
2L | 23513712 | 2L | 19767740..19768015 | 734..459 | 1380 | 100 | Minus |
2L | 23513712 | 2L | 19766363..19766629 | 1303..1037 | 1335 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6944 | 179..372 | 135 | 57.8 | Plus |
BO05014.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:52 Download gff for
BO05014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsh-RB | 1..1290 | 17..1304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:13 Download gff for
BO05014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsh-RB | 132..1425 | 9..1303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:53 Download gff for
BO05014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsh-RB | 139..1425 | 17..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:52 Download gff for
BO05014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsh-RB | 132..1425 | 9..1303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:27 Download gff for
BO05014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsh-RB | 139..1425 | 17..1305 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:27 Download gff for
BO05014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19766361..19766628 | 1038..1305 | 99 | <- | Minus |
2L | 19767048..19767350 | 735..1037 | 100 | <- | Minus |
2L | 19767740..19768014 | 460..734 | 100 | <- | Minus |
2L | 19768487..19768929 | 17..459 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:53 Download gff for
BO05014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19766361..19766628 | 1038..1305 | 99 | <- | Minus |
arm_2L | 19767048..19767350 | 735..1037 | 100 | <- | Minus |
arm_2L | 19767740..19768014 | 460..734 | 100 | <- | Minus |
arm_2L | 19768487..19768929 | 17..459 | 100 | | Minus |
BO05014.pep Sequence
Translation from 16 to 1321
> BO05014.pep
MAMLNEASLSPADAHAHANATTPTHSKAAAMASATTMLTTKTPFSIEHIL
FQNLNSASNNNNSSDTNGIAANTNNYAPKSSRNAVKSARSAFAHDNNPHK
HPSQHSHPPQSHPPASASASATATARSNQAASGYAGEDYGKSMHSTPRSN
HHSRHGTSHYNGDQISQQLGSGAAQHPPVPTTQPQPPPPPPLNGGSGASN
GVLYPNAPYTDHGFLQMTLGYLSPSSGTYKSVDPYFLSQASLFGGAPFFG
APGCVPELALGLGMGVNALRHCRRRKARTVFSDPQLSGLEKRFEGQRYLS
TPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRDNANEPVDFSRSEP
GKQPGEATSSSGDSKHGKLNPGSVGGTPTQPTSEQQLQMCLMQQGYSTDD
YSDLEADSGDEDNSSDVDIVGDAKLYQLTASFLDH
BO05014.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bsh-PC | 429 | CG10604-PC | 1..429 | 1..429 | 2269 | 100 | Plus |
bsh-PB | 429 | CG10604-PB | 1..429 | 1..429 | 2269 | 100 | Plus |
Dbx-PC | 741 | CG42234-PC | 249..495 | 94..335 | 252 | 31.5 | Plus |
Dll-PB | 322 | CG3629-PB | 114..226 | 263..373 | 201 | 40.4 | Plus |
Dll-PA | 327 | CG3629-PA | 114..226 | 263..373 | 201 | 40.4 | Plus |