Clone Sequence Records
BO05015.5prime Sequence
569 bp (568 high quality bases) assembled on 2005-12-02
> BO05015.5prime
GAAGTTATCAGTCGACATGCTTATAATGGATATACAGACATCGACACATC
ATATCCATGGGCTCGGAACACATGAGCTCCAACATCGTATTTTACATCCA
CACATTCTACATTCAACTCAAGAAGAAACCCTTAATACAAGTACAGGCCA
GCTAGAGCACGATTCCCAACATCTGCAACAACATCACCTCACTCATCATC
AGCAACAGGACGTTTCACCGACTTTGCACAATTTACAAAACACCCGCACT
GGTGATAGCCTGAGCACTACTATTAATACAAATCAAAATCAACATGGTCA
TCAACATCTTTCCGGAAGTAACATGTATACCTCGTCTCAAATGGAAGATA
AGTCAAAAGCGAACAAGTATGATGAGTATTCAAGCCGGACACTGAGCAAC
ATTTCGGATGCCAATACGACGCCATCTGCAAACAATTTCATAACACAATC
CCAAGGAATAGAGTGGATAACAGCCATGAATGATATTCAAAACGGGGCAG
AAGACTCACACAGTTCGCAGGGCAGTATTTCGGGTGATGGTAAGATATTT
CTAGCAAGCTTTCTAGACC
BO05015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11049-PA | 2535 | sv-RA | 1..525 | 17..541 | 2625 | 100 | Plus |
CG11049-PC | 1944 | sv-RC | 1..525 | 17..541 | 2625 | 100 | Plus |
CG11049-PD | 2043 | sv-RD | 1..525 | 17..541 | 2625 | 100 | Plus |
CG11049-PE | 2385 | sv-RE | 1..525 | 17..541 | 2625 | 100 | Plus |
CG11049-PF | 2379 | sv-RF | 1..525 | 17..541 | 2625 | 100 | Plus |
CG11049-PG | 1887 | sv-RG | 1..525 | 17..541 | 2625 | 100 | Plus |
CG11049-PH | 2529 | sv-RH | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sv-RH | 4501 | CG11049-RH | 107..631 | 17..541 | 2625 | 100 | Plus |
sv-RG | 2257 | CG11049-RG | 293..817 | 17..541 | 2625 | 100 | Plus |
sv-RF | 2749 | CG11049-RF | 293..817 | 17..541 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1092286..1092628 | 17..359 | 1715 | 100 | Plus |
4 | 1348131 | 4 | 1095574..1095716 | 358..500 | 715 | 100 | Plus |
4 | 1348131 | 4 | 1095791..1095846 | 498..553 | 280 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 13:37:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1486..1582 | 117..210 | 126 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2386 | 138..210 | 110 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6891 | 150..210 | 107 | 63.9 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..639 | 167..268 | 106 | 59.8 | Plus |
BO05015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:16 Download gff for
BO05015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11049-PH | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:58 Download gff for
BO05015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11049-PH | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:43:57 Download gff for
BO05015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RF | 293..817 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:03:09 Download gff for
BO05015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RF | 293..817 | 17..541 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:03:09 Download gff for
BO05015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1092286..1092628 | 17..359 | 100 | -> | Plus |
4 | 1095576..1095716 | 360..500 | 100 | -> | Plus |
4 | 1095794..1095846 | 501..553 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:43:57 Download gff for
BO05015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1112912..1113254 | 17..359 | 100 | -> | Plus |
arm_4 | 1116202..1116342 | 360..500 | 100 | -> | Plus |
arm_4 | 1116420..1116472 | 501..553 | 100 | | Plus |
BO05015.3prime Sequence
569 bp (568 high quality bases) assembled on 2005-12-02
> BO05015.3prime
ATGGTCTAGAAAGCTTGCTAGAAATATCTTACCATCACCCGAAATACTGC
CCTGCGAACTGTGTGAGTCTTCTGCCCCGTTTTGAATATCATTCATGGCT
GTTATCCACTCTATTCCTTGGGATTGTGTTATGAAATTGTTTGCAGATGG
CGTCGTATTGGCATCCGAAATGTTGCTCAGTGTCCGGCTTGAATACTCAT
CATACTTGTTCGCTTTTGACTTATCTTCCATTTGAGACGAGGTATACATG
TTACTTCCGGAAAGATGTTGATGACCATGTTGATTTTGATTTGTATTAAT
AGTAGTGCTCAGGCTATCACCAGTGCGGGTGTTTTGTAAATTGTGCAAAG
TCGGTGAAACGTCCTGTTGCTGATGATGAGTGAGGTGATGTTGTTGCAGA
TGTTGGGAATCGTGCTCTAGCTGGCCTGTACTTGTATTAAGGGTTTCTTC
TTGAGTTGAATGTAGAATGTGTGGATGTAAAATACGATGTTGGAGCTCAT
GTGTTCCGAGCCCATGGATATGATGTGTCGATGTCTGTATATCCATTATA
AGCATGTCGACTGATAACT
BO05015.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11049-PA | 2535 | sv-RA | 1..525 | 555..31 | 2625 | 100 | Minus |
CG11049-PC | 1944 | sv-RC | 1..525 | 555..31 | 2625 | 100 | Minus |
CG11049-PD | 2043 | sv-RD | 1..525 | 555..31 | 2625 | 100 | Minus |
CG11049-PE | 2385 | sv-RE | 1..525 | 555..31 | 2625 | 100 | Minus |
CG11049-PF | 2379 | sv-RF | 1..525 | 555..31 | 2625 | 100 | Minus |
CG11049-PG | 1887 | sv-RG | 1..525 | 555..31 | 2625 | 100 | Minus |
CG11049-PH | 2529 | sv-RH | 1..525 | 555..31 | 2625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sv-RH | 4501 | CG11049-RH | 107..631 | 555..31 | 2625 | 100 | Minus |
sv-RG | 2257 | CG11049-RG | 293..817 | 555..31 | 2625 | 100 | Minus |
sv-RF | 2749 | CG11049-RF | 293..817 | 555..31 | 2625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:33:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1092286..1092628 | 555..213 | 1715 | 100 | Minus |
4 | 1348131 | 4 | 1095574..1095716 | 214..72 | 715 | 100 | Minus |
4 | 1348131 | 4 | 1095791..1095846 | 74..19 | 280 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 19:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1486..1582 | 455..362 | 126 | 61.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2386 | 434..362 | 110 | 65.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6891 | 422..362 | 107 | 63.9 | Minus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..639 | 405..304 | 106 | 59.8 | Minus |
BO05015.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:15 Download gff for
BO05015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11049-PH | 1..525 | 31..555 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:33:56 Download gff for
BO05015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11049-PH | 1..525 | 31..555 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:18:35 Download gff for
BO05015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RF | 293..817 | 31..555 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:37:26 Download gff for
BO05015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RF | 293..817 | 31..555 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:37:26 Download gff for
BO05015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1092286..1092628 | 213..555 | 100 | -> | Minus |
4 | 1095576..1095716 | 72..212 | 100 | -> | Minus |
4 | 1095794..1095846 | 19..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:18:35 Download gff for
BO05015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1112912..1113254 | 213..555 | 100 | -> | Minus |
arm_4 | 1116202..1116342 | 72..212 | 100 | -> | Minus |
arm_4 | 1116420..1116472 | 19..71 | 100 | | Minus |
BO05015.complete Sequence
571 bp (571 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629939
> BO05015.complete
GAAGTTATCAGTCGACATGCTTATAATGGATATACAGACATCGACACATC
ATATCCATGGGCTCGGAACACATGAGCTCCAACATCGTATTTTACATCCA
CACATTCTACATTCAACTCAAGAAGAAACCCTTAATACAAGTACAGGCCA
GCTAGAGCACGATTCCCAACATCTGCAACAACATCACCTCACTCATCATC
AGCAACAGGACGTTTCACCGACTTTGCACAATTTACAAAACACCCGCACT
GGTGATAGCCTGAGCACTACTATTAATACAAATCAAAATCAACATGGTCA
TCAACATCTTTCCGGAAGTAACATGTATACCTCGTCTCAAATGGAAGATA
AGTCAAAAGCGAACAAGTATGATGAGTATTCAAGCCGGACACTGAGCAAC
ATTTCGGATGCCAATACGACGCCATCTGCAAACAATTTCATAACACAATC
CCAAGGAATAGAGTGGATAACAGCCATGAATGATATTCAAAACGGGGCAG
AAGACTCACACAGTTCGCAGGGCAGTATTTCGGGTGATGGTAAGATATTT
CTAGCAAGCTTTCTAGACCAT
BO05015.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sv-RH | 2529 | CG11049-PH | 1..525 | 17..541 | 2625 | 100 | Plus |
sv-RG | 1887 | CG11049-PG | 1..525 | 17..541 | 2625 | 100 | Plus |
sv-RF | 2379 | CG11049-PF | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sv-RH | 4501 | CG11049-RH | 107..631 | 17..541 | 2625 | 100 | Plus |
sv-RG | 2257 | CG11049-RG | 293..817 | 17..541 | 2625 | 100 | Plus |
sv-RF | 2749 | CG11049-RF | 293..817 | 17..541 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1092286..1092628 | 17..359 | 1715 | 100 | Plus |
4 | 1348131 | 4 | 1095574..1095716 | 358..500 | 715 | 100 | Plus |
4 | 1348131 | 4 | 1095791..1095846 | 498..553 | 280 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1486..1582 | 117..210 | 126 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2386 | 138..210 | 110 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6891 | 150..210 | 107 | 63.9 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..639 | 167..268 | 106 | 59.8 | Plus |
BO05015.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:53 Download gff for
BO05015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RD | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:15 Download gff for
BO05015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RC | 273..797 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:24 Download gff for
BO05015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RF | 293..817 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:53 Download gff for
BO05015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RC | 273..797 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:27 Download gff for
BO05015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RF | 293..817 | 17..541 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:27 Download gff for
BO05015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1092286..1092628 | 17..359 | 100 | -> | Plus |
4 | 1095576..1095716 | 360..500 | 100 | -> | Plus |
4 | 1095794..1095846 | 501..555 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:24 Download gff for
BO05015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1116420..1116472 | 501..555 | 96 | | Plus |
arm_4 | 1112912..1113254 | 17..359 | 100 | -> | Plus |
arm_4 | 1116202..1116342 | 360..500 | 100 | -> | Plus |
BO05015.pep Sequence
Translation from 16 to 571
> BO05015.pep
MLIMDIQTSTHHIHGLGTHELQHRILHPHILHSTQEETLNTSTGQLEHDS
QHLQQHHLTHHQQQDVSPTLHNLQNTRTGDSLSTTINTNQNQHGHQHLSG
SNMYTSSQMEDKSKANKYDEYSSRTLSNISDANTTPSANNFITQSQGIEW
ITAMNDIQNGAEDSHSSQGSISGDGKIFLASFLDH
BO05015.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sv-PG | 628 | CG11049-PG | 1..175 | 1..175 | 931 | 100 | Plus |
sv-PC | 647 | CG11049-PC | 1..175 | 1..175 | 931 | 100 | Plus |
sv-PD | 680 | CG11049-PD | 1..175 | 1..175 | 931 | 100 | Plus |
sv-PF | 792 | CG11049-PF | 1..175 | 1..175 | 931 | 100 | Plus |
sv-PH | 842 | CG11049-PH | 1..175 | 1..175 | 931 | 100 | Plus |