Clone Sequence Records
BO05017.3prime Sequence
881 bp (839 high quality bases) assembled on 2005-12-02
> BO05017.3prime
ATGGTCTAGAAAGCTTGCCTTTTGCGAGAGAATTTCTATTTTTGGAGGCG
GCGTAATAGAGGAAGTGCGCGAAGTATTTGATGCATCTATACTTGCTCGT
CGTGCAGCTGCGGCAATATACGACCCGTAGTACCTACTAAGCATGTGTTG
ATCAACCTGGTTCAGTTCAAGATACGCATCTGAAATGGGAACTGACAGGG
TTGATGTTTTCGCAGTAGCCATTGACGATATGAGTGCAGTTTGGGGCGCG
ACAATGCACTCTTGTATAGGACATTCCTCAAGTGAGCTTGACTCCTCGTG
TTGGCTACTACTGCTACCCAAGGACCTGGCTGCGGAGCTGGCAATTGAAA
AGTTGTGCTGTTCAAGGTCTTCTGGATCGTGGTCGGGGTCATGATCGGGA
TCGGCATCAAATGAAGATAGCCTGCCATCGATTAGGTACGAGTTATTGTC
CTCAATGGAAAATATTTGCTTCAAAGTGCCCCTTGTTTTTTTCCTGTCTT
CCCCATCCGTATAAGAATCAGTATCAGGAATAATGCTATCGTCTACCACG
TCGACATTAACTTCTACATCAATATCAGCGTCTATGTCTGCATCTTGCAC
AGGTTTTTCTAATCCCAACACAACTTCGCGGTGTATTGTTTGCTTGGTAA
TGACAGTATGATGAGTTTGAGTTGTTGTCCTCGCCGAAGTGGTTGGCGTA
ACTGACGACTCCTGGTCTTCAGAGACAATATCAACGATTTGGACATCGGG
TGCCAGTAGCGAAGCCACGTCAAACTGGCGCTTCCGCGTCTGCGAAAACA
TATTCGCGATTGTTGTTGTCGTGGTGGAGTTGATATAGGCAAAGTGCTGA
TGATGGGAATGTGGCTGCTGGAGCTGAATTG
BO05017.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11152-PA | 1800 | CG11152-RA | 939..1797 | 877..19 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd102C-RA | 2324 | CG11152-RA | 1236..2098 | 881..19 | 4300 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 837212..838074 | 19..881 | 4300 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:38:11 has no hits.
BO05017.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:19 Download gff for
BO05017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11152-PA | 935..1800 | 15..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:01 Download gff for
BO05017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11152-PA | 935..1800 | 15..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:43:59 Download gff for
BO05017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd102C-RA | 1236..2101 | 15..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:03:42 Download gff for
BO05017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd102C-RA | 1236..2101 | 15..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:03:42 Download gff for
BO05017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 837208..838074 | 15..881 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:43:59 Download gff for
BO05017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 857834..858700 | 15..881 | 99 | | Plus |
BO05017.5prime Sequence
883 bp (807 high quality bases) assembled on 2005-12-02
> BO05017.5prime
GAAGTTATCAGTCGACATGGCGCACTCTGACATATGTGCTTTACAGACGA
CCACTGCTGACCAGGATCAGGGAACGTCTTCAAGGGACAGCAATGTTCCC
AAGCCGTCTTTGCCCAACATCTACCCACTTGGAACGACAAGAACTTCACA
AGCTCAATCAACGACGATGACTTTGGAACAATACCGCCTCCAGCTGTATA
ACTATGCACTCAATATTGAACGACTACGCTGCCCCCAATATGGTGGGACG
GGTGGCAGTGGAGCTAGTGCTCCTTGGTTGCATTTAAGCCCCTACGGACA
CCATGGCTCAGGCAGTCTTCCATCAGTTAATCGAATGGCCGCTCTTTCAA
CAATTTCCCTCTTCCCACAAACGCAACGCATTTTTCAACCTGAGGAGCCT
AAACCGCAACACAGCTATATTGGTTTGATTGCCATGGCCATATTGAGCTC
AACTGATATGAAGTTGGTTCTCTCAGACATTTATCAATATATTTTGGATA
ATTATCCTTACTTTAGAAGTCGGGGGCCGGGATGGAGAAACTCCATCAGG
CACAATCTCTCTCTAAATGATTGCTTTATCAAATCTGGACGAAGTGCAAA
TGGCAAAGGGCACTACTGGGCAATACATCCAGCCAACATGGAGGATTTTC
GCAAAGGGGATTTTAGACGTCGCAAGGCGCAGCGTAAGGTCCGAAAGCAT
ATGGGTCTATCGGTGGATGACGCCAGCACTGACTCGCCCAGCCCGCCGCC
TTTGGATCTTACAACTCCACCCCCACCGAGTTCCCAGTCTGCTCTGCAAC
TATCTGCCCTGGGTTATCCATACCACCAGCACTATATCGGCCAATTCTTT
AACAGGAGCTCAGCACCTGGTATGACGCATTTA
BO05017.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11152-PA | 1800 | CG11152-RA | 1..865 | 17..881 | 4325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd102C-RA | 2324 | CG11152-RA | 302..1166 | 17..881 | 4325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 838144..839008 | 881..17 | 4325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:32:39 has no hits.
BO05017.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:19 Download gff for
BO05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11152-PA | 1..865 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:02 Download gff for
BO05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11152-PA | 1..865 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:02 Download gff for
BO05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd102C-RA | 290..1166 | 4..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:14:52 Download gff for
BO05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd102C-RA | 290..1166 | 4..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:14:52 Download gff for
BO05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 838142..839020 | 4..882 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:02 Download gff for
BO05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 858768..859646 | 4..882 | 99 | | Minus |
BO05017.complete Sequence
1831 bp (1831 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629940
> BO05017.complete
GAAGTTATCAGTCGACATGGCGCACTCTGACATATGTGCTTTACAGACGA
CCACTGCTGACCAGGATCAGGGAACGTCTTCAAGGGACAGCAATGTTCCC
AAGCCGTCTTTGCCCAACATCTACCCACTTGGAACGACAAGAACTTCACA
AGCTCAATCAACGACGATGACTTTGGAACAATACCGCCTCCAGCTGTATA
ACTATGCACTCAATATTGAACGACTACGCTGCCCCCAATATGGTGGGACG
GGTGGCAGTGGAGCTAGTGCTCCTTGGTTGCATTTAAGCCCCTACGGACA
CCATGGCTCAGGCAGTCTTCCATCAGTTAATCGAATGGCCGCTCTTTCAA
CAATTTCCCTCTTCCCACAAACGCAACGCATTTTTCAACCTGAGGAGCCT
AAACCGCAACACAGCTATATTGGTTTGATTGCCATGGCCATATTGAGCTC
AACTGATATGAAGTTGGTTCTCTCAGACATTTATCAATATATTTTGGATA
ATTATCCTTACTTTAGAAGTCGGGGGCCGGGATGGAGAAACTCCATCAGG
CACAATCTCTCTCTAAATGATTGCTTTATCAAATCTGGACGAAGTGCAAA
TGGCAAAGGGCACTACTGGGCAATACATCCAGCCAACATGGAGGATTTTC
GCAAAGGGGATTTTAGACGTCGCAAGGCGCAGCGTAAGGTCCGAAAGCAT
ATGGGTCTATCGGTGGATGACGCCAGCACTGACTCGCCCAGCCCGCCGCC
TTTGGATCTTACAACTCCACCCCCACCGAGTTCCCAGTCTGCTCTGCAAC
TATCTGCCCTGGGTTATCCATACCACCAGCACTATATCGGCCAATTCTTT
AACAGGAGCTCAGCACCTGGTATGACGCATTATTCCCCACCAGATCCAGC
CTTGTTAATGCAACGACAAGAGGCGAATAACCTAGATCAGACAATCCAAC
CAACTCAGCTCCAGCAGCCACATTCCCATCATCAGCACTTTGCCTATATC
AACTCCACCACGACAACAACAATCGCGAATATGTTTTCGCAGACGCGGAA
GCGCCAGTTTGACGTGGCTTCGCTACTGGCACCCGATGTCCAAATCGTTG
ATATTGTCTCTGAAGACCAGGAGTCGTCAGTTACGCCAACCACTTCGGCG
AGGACAACAACTCAAACTCATCATACTGTCATTACCAAGCAAACAATACA
CCGCGAAGTTGTGTTGGGATTAGAAAAACCTGTGCAAGATGCAGACATAG
ACGCTGATATTGATGTAGAAGTTAATGTCGACGTGGTAGACGATAGCATT
ATTCCTGATACTGATTCTTATACGGATGGGGAAGACAGGAAAAAAACAAG
GGGCACTTTGAAGCAAATATTTTCCATTGAGGACAATAACTCGTACCTAA
TCGATGGCAGGCTATCTTCATTTGATGCCGATCCCGATCATGACCCCGAC
CACGATCCAGAAGACCTTGAACAGCACAACTTTTCAATTGCCAGCTCCGC
AGCCAGGTCCTTGGGTAGCAGTAGTAGCCAACACGAGGAGTCAAGCTCAC
TTGAGGAATGTCCTATACAAGAGTGCATTGTCGCGCCCCAAACTGCACTC
ATATCGTCAATGGCTACTGCGAAAACATCAACCCTGTCAGTTCCCATTTC
AGATGCGTATCTTGAACTGAACCAGGTTGATCAACACATGCTTAGTAGGT
ACTACGGGTCGTATATTGCCGCAGCTGCACGACGAGCAAGTATAGATGCA
TCAAATACTTCGCGCACTTCCTCTATTACGCCGCCTCCAAAAATAGAAAT
TCTCTCGCAAAAGGCAAGCTTTCTAGACCAT
BO05017.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd102C-RA | 1800 | CG11152-PA | 1..1797 | 17..1813 | 8985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd102C-RA | 2324 | CG11152-RA | 302..2098 | 17..1813 | 8985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 837212..839008 | 1813..17 | 8985 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:36:49 has no hits.
BO05017.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:59 Download gff for
BO05017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11152-RA | 1..1800 | 17..1817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:04 Download gff for
BO05017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11152-RA | 267..2078 | 4..1817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:04 Download gff for
BO05017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd102C-RA | 302..2098 | 17..1815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:00 Download gff for
BO05017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11152-RA | 1..1800 | 17..1817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:53 Download gff for
BO05017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd102C-RA | 302..2098 | 17..1815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:53 Download gff for
BO05017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 837210..839008 | 17..1815 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:04 Download gff for
BO05017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 857836..859634 | 17..1815 | 99 | | Minus |
BO05017.pep Sequence
Translation from 16 to 1831
> BO05017.pep
MAHSDICALQTTTADQDQGTSSRDSNVPKPSLPNIYPLGTTRTSQAQSTT
MTLEQYRLQLYNYALNIERLRCPQYGGTGGSGASAPWLHLSPYGHHGSGS
LPSVNRMAALSTISLFPQTQRIFQPEEPKPQHSYIGLIAMAILSSTDMKL
VLSDIYQYILDNYPYFRSRGPGWRNSIRHNLSLNDCFIKSGRSANGKGHY
WAIHPANMEDFRKGDFRRRKAQRKVRKHMGLSVDDASTDSPSPPPLDLTT
PPPPSSQSALQLSALGYPYHQHYIGQFFNRSSAPGMTHYSPPDPALLMQR
QEANNLDQTIQPTQLQQPHSHHQHFAYINSTTTTTIANMFSQTRKRQFDV
ASLLAPDVQIVDIVSEDQESSVTPTTSARTTTQTHHTVITKQTIHREVVL
GLEKPVQDADIDADIDVEVNVDVVDDSIIPDTDSYTDGEDRKKTRGTLKQ
IFSIEDNNSYLIDGRLSSFDADPDHDPDHDPEDLEQHNFSIASSAARSLG
SSSSQHEESSSLEECPIQECIVAPQTALISSMATAKTSTLSVPISDAYLE
LNQVDQHMLSRYYGSYIAAAARRASIDASNTSRTSSITPPPKIEILSQKA
SFLDH
BO05017.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd102C-PA | 599 | CG11152-PA | 1..599 | 1..599 | 3122 | 100 | Plus |
| fd64A-PB | 365 | CG1132-PB | 91..198 | 129..230 | 273 | 48.2 | Plus |
| fd64A-PA | 365 | CG1132-PA | 91..198 | 129..230 | 273 | 48.2 | Plus |
| fd96Ca-PB | 372 | CG11921-PB | 11..114 | 127..228 | 272 | 51 | Plus |
| fd96Ca-PA | 372 | CG11921-PA | 11..114 | 127..228 | 272 | 51 | Plus |
