Clone Sequence Records
BO05019.3prime Sequence
885 bp (791 high quality bases) assembled on 2005-12-02
> BO05019.3prime
ATGGTCTAGAAAGCTTGCTTTATTCTTGGGCAAGTGGCGCTTCATGTGGA
GCGCCAGGTGATCACTCCTCGCAAAGCTCCTCTCGCACACGATGCATTTG
AAGGGTTTGGCCCCCGTGTGCTTCCGGTAGTGCCTCGTTAGCTCGTCCGA
CCTGGCGAATCTCCACTCGCATTCCGGCCACTGGCAGGTGTATGGCTTCT
CACCCGTGTGTATCCTTTGATGGGCCTTCAGATGAGAGCTTTTTGTGTAC
ACCTTGGAGCAGCCGACGAAATCACAGTGGTGGATGCGTCGCTTTTCCAG
CTCGGGATTATTTCGGCGGTTGTAACGCACCGTTCGTACGCTCATCAAAC
TGGCGATGTGGGCCGCCGTTCCCGGTTGGTGGTGCGAGTGCCGACCACGC
CTCCCGCCCCCCGAAGAGCGGGGGGTGGGCGGTGGCTGTTGCTGTGGCAC
CTGTTGCTGCTGTGGTTGTTGCTGCTGCTGCTGAATGGCACTGGCGGGTG
TTAAGGTGGTTAGGGTGGTGGTGCAACTGTTGTTGCTGCCTGTGGCTGCA
CCACCCAGAAGTTGCAGCGTTGGCGGTGGGTTAATTAGGCCCATCACATG
ACCTTGCTGGTAGGGCGGTGGTGGGGTGGTGCGTCGTTGGGCGGCTGCAG
CAGCTGCTGCTGCCACCATCGAGCTGCCAGGGCTTCCGGGATCCGAACTT
GGCGGGGTCAAAGGTGGCACGAACATATGGCGACTGGCAGAGGAGGCGGA
GGAAGAGGAAATGGACGAGGAGGAGGTCGAGGGAGTGCTGGGCGCCGCAG
GGGGGCACAGTTGCTGCAGCTGTTGCTGCTGCTGTTGCTGTTGCTGCTGT
TGAGCACCGAATTGAGCTGTGGGCGTGGCAGTGGC
BO05019.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12029-PA | 330 | CG12029-RA | 1..327 | 345..19 | 1635 | 100 | Minus |
CG12653-PA | 1935 | btd-RA | 193..225 | 483..451 | 140 | 96.9 | Minus |
CG10325-PB | 1773 | abd-A-RB | 162..193 | 483..452 | 135 | 96.8 | Minus |
CG32466-PB | 2079 | rn-RB | 1582..1613 | 483..452 | 135 | 96.8 | Minus |
CG32778-PA | 2829 | CG32778-RA | 1534..1565 | 483..452 | 135 | 96.8 | Minus |
CG32466-PA | 2841 | rn-RA | 2344..2375 | 483..452 | 135 | 96.8 | Minus |
CG15532-PC | 3243 | hdc-RC | 2203..2234 | 483..452 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dar1-RB | 3526 | CG12029-RB | 2117..2983 | 885..19 | 4320 | 99.9 | Minus |
luna-RC | 8446 | CG33473-RC | 2861..3098 | 272..34 | 270 | 74.5 | Minus |
luna-RD | 3037 | CG33473-RD | 2290..2527 | 272..34 | 270 | 74.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:23:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3646799..3647421 | 885..263 | 3100 | 99.8 | Minus |
3L | 28110227 | 3L | 3652714..3652899 | 204..19 | 930 | 100 | Minus |
3L | 28110227 | 3L | 3649278..3649343 | 264..199 | 330 | 100 | Minus |
2R | 25286936 | 2R | 10983304..10983417 | 34..147 | 195 | 78.1 | Plus |
Blast to na_te.dros performed 2015-02-11 23:23:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G6 | 2042 | G6 G6_DM 2042bp | 1787..1849 | 552..490 | 108 | 63.5 | Minus |
BO05019.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:22 Download gff for
BO05019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12029-PA | 1..330 | 16..345 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:06 Download gff for
BO05019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12029-PA | 1..330 | 16..345 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:57 Download gff for
BO05019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dar1-RB | 2117..2983 | 19..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:11 Download gff for
BO05019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dar1-RB | 2117..2983 | 19..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:11 Download gff for
BO05019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3646799..3647420 | 264..885 | 99 | -> | Minus |
3L | 3649279..3649338 | 204..263 | 100 | -> | Minus |
3L | 3652715..3652899 | 19..203 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:57 Download gff for
BO05019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3646799..3647420 | 264..885 | 99 | -> | Minus |
arm_3L | 3649279..3649338 | 204..263 | 100 | -> | Minus |
arm_3L | 3652715..3652899 | 19..203 | 100 | | Minus |
BO05019.5prime Sequence
864 bp (812 high quality bases) assembled on 2005-12-02
> BO05019.5prime
GAAGTTATCAGTCGACATGCATACGGATATCATAATTGGTGATCAGTTTG
CCGCCAACAATAACTACTGGGTGATGCAGTCCCCGGAACTAGACTATCGG
CACGAGCTGATGGGTCGTCTGCATAAAATCGAGCCCGCCGATGTTGAGCT
TGAGGTTCTGGCAGCGGCCGCGGCAGCCGCAAACAACAACAACAACACCA
GCAGCAATAACAACCACAGCAGCAACAGCAGCAGCAACAACAGCAACGGC
AGCCAAACACCAAACGGCAACAACAACAGCAGTTTGGCAACCGGAGGCCA
TCAGCATCATCAGTTCCACCACCACCTGCACCACCACCACTCCCATCAGC
ACCACCACCAGCACCATCATTTGCACCAGCATCATTCGCACAGCCTTCAA
AGTGGCGAAAGTGGTGCATCGGAGGCGTGGCCCCACCTTCCCGCCCCCTC
GTACGCCAGCGATGTTCCACATGCGCAGCAGCAGCAACTTCAGCCCGCCG
GATCGCCGAATTCCAACTCAAACGGAGCCTACGGCTGTGCACCACTCTAC
GATGGAGCGCCCTACGAAGTGGCACTCGGCTACGGTGGTGCGGTGGTTGC
GTCAACGGGTGGTGCGACTTCCAGCGACAAGGAGTATTTATATGAAACCA
AAAACAAAGAGGCTCTCTACGCCGATCCGCTGGACGATCCCTACCAGCGA
CCCGTGCTCTGGGATGATATTACTACCTCAATCCAAAATATCGATCCGGA
GAACGCGCTCATGCTGAGCAGCAGCGGTAGCAGCAACAACAACGGCAGCA
GCAACAGCAGCAGCAACACGGGCGAGTCTGCAACATCGCAGCTGCCGCAG
GTCAAGATGGAGGC
BO05019.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 12:15:43 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dar1-RB | 3526 | CG12029-RB | 731..1578 | 17..864 | 4240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3644639..3645206 | 77..644 | 2840 | 100 | Plus |
3L | 28110227 | 3L | 3645874..3646094 | 644..864 | 1105 | 100 | Plus |
3L | 28110227 | 3L | 3627082..3627144 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:46:35 has no hits.
BO05019.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:35:25 Download gff for
BO05019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dar1-RB | 731..1578 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:02 Download gff for
BO05019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dar1-RB | 731..1578 | 17..864 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:02 Download gff for
BO05019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3627082..3627144 | 17..79 | 100 | -> | Plus |
3L | 3644642..3645206 | 80..644 | 100 | -> | Plus |
3L | 3645875..3646094 | 645..864 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:35:25 Download gff for
BO05019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3627082..3627144 | 17..79 | 100 | -> | Plus |
arm_3L | 3644642..3645206 | 80..644 | 100 | -> | Plus |
arm_3L | 3645875..3646094 | 645..864 | 100 | | Plus |
BO05019.complete Sequence
2287 bp assembled on 2008-08-14
GenBank Submission: FJ629941
> BO05019.complete
GAAGTTATCAGTCGACATGCATACGGATATCATAATTGGTGATCAGTTTG
CCGCCAACAATAACTACTGGGTGATGCAGTCCCCGGAACTAGACTATCGG
CACGAGCTGATGGGTCGTCTGCATAAAATCGAGCCCGCCGATGTTGAGCT
TGAGGTTCTGGCAGCGGCCGCGGCAGCCGCAAACAACAACAACAACACCA
GCAGCAATAACAACCACAGCAGCAACAGCAGCAGCAACAACAGCAACGGC
AGCCAAACACCAAACGGCAACAACAACAGCAGTTTGGCAACCGGAGGCCA
TCAGCATCATCAGTTCCACCACCACCTGCACCACCACCACTCCCATCAGC
ACCACCACCAGCACCATCATTTGCACCAGCATCATTCGCACAGCCTTCAA
AGTGGCGAAAGTGGTGCATCGGAGGCGTGGCCCCACCTTCCCGCCCCCTC
GTACGCCAGCGATGTTCCACATGCGCAGCAGCAGCAACTTCAGCCCGCCG
GATCGCCGAATTCCAACTCAAACGGAGCCTACGGCTGTGCACCACTCTAC
GATGGAGCGCCCTACGAAGTGGCACTCGGCTACGGTGGTGCGGTGGTTGC
GTCAACGGGTGGTGCGACTTCCAGCGACAAGGAGTATTTATATGAAACCA
AAAACAAAGAGGCTCTCTACGCCGATCCGCTGGACGATCCCTACCAGCGA
CCCGTGCTCTGGGATGATATTACTACCTCAATCCAAAATATCGATCCGGA
GAACGCGCTCATGCTGAGCAGCAGCGGTAGCAGCAACAACAACGGCAGCA
GCAACAGCAGCAGCAACACGGGCGAGTCTGCAACATCGCAGCTGCCGCAG
GTCAAGATGGAGGCGATCGATGAGAGCCTGCTCGAGACATTTTCGACCCC
ATTGCTCAGTCCCCTGGAGATAAAGACCGAGAAACAGCAGCGACAACAGC
AGCACCAGCACCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAA
CACCAGCAACAACATCAGCAACAATACCAGCAGCAACACTATCAGCAACA
TTATCAGCAGCAGCACTTGTACCAGCATCATCCCAGCCTGGCGCTGCCTG
GCTTGCCACCCGCTGTCGACGTGGTAGAGTTGCAACTGCAGCAGCAGCAT
CAACAGCAGCAACATCTGCAGCACAACAACAGTAGCAGCAGCAGCCCCAA
GCTGGCGACCCCCGGCGACAACAGCGGCAACACCTCCTCCTATCAGCAAC
AGTACGCATCTCAATTGGTCTCCGGATCGGGAGGCGGCTATCTCAACGGT
AGCAGCAGCAACTCCTACGGCTACAGCTGGCACAGCAGTCAGTCCTTCCA
CACCAAATACCAAATACACCCGCCATCAGCCGCTGCTTCAGCCACCGCCT
CCGCCACTGCCACGCCCACAGCTCAACTCGGTGCTCAACAGCAGCAACAG
CAACAGCAGCAGCAACAGCTGCAGCAACTGTGCCCCCCTGCGGCGCCCAG
CACTCCCTCGACCTCCTCCTCGTCCATTTCCTCTTCCTCCGCCTCCTCTG
CCAGTCGCCATATGTTCGTGCCACCTTTGACCCCGCCAAGTTCGGATCCC
GGAAGCCCTGGCAGCTCGATGGTGGCAGCAGCAGCTGCTGCAGCCGCCCA
ACGACGCACCACCCCACCACCGCCCTACCAGCAAGGTCATGTGATGGGCC
TAATTAACCCACCGCCAACGCTGCAACTTCTGGGTGGTGCAGCCACAGGC
AGCAACAACAGTTGCACCACCACCCTAACCACCTTAACACCCGCCAGTGC
CATTCAGCAGCAGCAGCAACAACCACAGCAGCAACAGGTGCCACAGCAAC
AGCCACCGCCCACCCCCCGCTCTTCGGGGGGCGGGAGGCGTGGTCGGCAC
TCGCACCACCAACCGGGAACGGCGGCCCACATCGCCAGTTTGATGAGCGT
ACGAACGGTGCGTTACAACCGCCGAAATAATCCCGAGCTGGAAAAGCGAC
GCATCCACCACTGTGATTTCGTCGGCTGCTCCAAGGTGTACACAAAAAGC
TCTCATCTGAAGGCCCATCAAAGGATACACACGGGTGAGAAGCCATACAC
CTGCCAGTGGCCGGAATGCGAGTGGAGATTCGCCAGGTCGGACGAGCTAA
CGAGGCACTACCGGAAGCACACGGGGGCCAAACCCTTCAAATGCATCGTG
TGCGAGAGGAGCTTTGCGAGGAGTGATCACCTGGCGCTCCACATGAAGCG
CCACTTGCCCAAGAATAAAGCAAGCTTTCTAGACCAT
BO05019.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dar1-RB | 2256 | CG12029-PB | 1..2253 | 17..2269 | 11265 | 100 | Plus |
luna-RC | 1713 | CG33473-PC | 1475..1707 | 2022..2254 | 265 | 74.2 | Plus |
luna-RD | 1713 | CG33473-PD | 1475..1707 | 2022..2254 | 265 | 74.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dar1-RB | 3526 | CG12029-RB | 731..2983 | 17..2269 | 11265 | 100 | Plus |
luna-RC | 8446 | CG33473-RC | 2866..3098 | 2022..2254 | 265 | 74.2 | Plus |
luna-RD | 3037 | CG33473-RD | 2295..2527 | 2022..2254 | 265 | 74.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3645874..3646572 | 644..1342 | 3495 | 100 | Plus |
3L | 28110227 | 3L | 3646736..3647421 | 1340..2025 | 3430 | 100 | Plus |
3L | 28110227 | 3L | 3644639..3645206 | 77..644 | 2840 | 100 | Plus |
3L | 28110227 | 3L | 3652714..3652899 | 2084..2269 | 930 | 100 | Plus |
3L | 28110227 | 3L | 3649278..3649343 | 2024..2089 | 330 | 100 | Plus |
3L | 28110227 | 3L | 3627082..3627144 | 17..79 | 315 | 100 | Plus |
2R | 25286936 | 2R | 10983304..10983417 | 2254..2141 | 195 | 78.1 | Minus |
Blast to na_te.dros performed 2014-11-27 08:54:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6923 | 1284..1472 | 206 | 60.4 | Plus |
BO05019.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:18 Download gff for
BO05019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12029-RB | 209..2461 | 17..2269 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:54 Download gff for
BO05019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dar1-RB | 731..2983 | 17..2271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:19 Download gff for
BO05019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12029-RB | 209..2461 | 17..2271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:34 Download gff for
BO05019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dar1-RB | 731..2983 | 17..2271 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:34 Download gff for
BO05019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3627082..3627144 | 17..79 | 100 | -> | Plus |
3L | 3644642..3645206 | 80..644 | 100 | -> | Plus |
3L | 3645875..3646572 | 645..1342 | 100 | -> | Plus |
3L | 3646739..3647420 | 1343..2024 | 100 | -> | Plus |
3L | 3649279..3649338 | 2025..2084 | 100 | -> | Plus |
3L | 3652715..3652899 | 2085..2271 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:54 Download gff for
BO05019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3627082..3627144 | 17..79 | 100 | -> | Plus |
arm_3L | 3644642..3645206 | 80..644 | 100 | -> | Plus |
arm_3L | 3645875..3646572 | 645..1342 | 100 | -> | Plus |
arm_3L | 3646739..3647420 | 1343..2024 | 100 | -> | Plus |
arm_3L | 3649279..3649338 | 2025..2084 | 100 | -> | Plus |
arm_3L | 3652715..3652899 | 2085..2271 | 98 | | Plus |
BO05019.pep Sequence
Translation from 16 to 2287
> BO05019.pep
MHTDIIIGDQFAANNNYWVMQSPELDYRHELMGRLHKIEPADVELEVLAA
AAAAANNNNNTSSNNNHSSNSSSNNSNGSQTPNGNNNSSLATGGHQHHQF
HHHLHHHHSHQHHHQHHHLHQHHSHSLQSGESGASEAWPHLPAPSYASDV
PHAQQQQLQPAGSPNSNSNGAYGCAPLYDGAPYEVALGYGGAVVASTGGA
TSSDKEYLYETKNKEALYADPLDDPYQRPVLWDDITTSIQNIDPENALML
SSSGSSNNNGSSNSSSNTGESATSQLPQVKMEAIDESLLETFSTPLLSPL
EIKTEKQQRQQQHQHQQQQQQQQQQQQQHQQQHQQQYQQQHYQQHYQQQH
LYQHHPSLALPGLPPAVDVVELQLQQQHQQQQHLQHNNSSSSSPKLATPG
DNSGNTSSYQQQYASQLVSGSGGGYLNGSSSNSYGYSWHSSQSFHTKYQI
HPPSAAASATASATATPTAQLGAQQQQQQQQQQQLQQLCPPAAPSTPSTS
SSSISSSSASSASRHMFVPPLTPPSSDPGSPGSSMVAAAAAAAAQRRTTP
PPPYQQGHVMGLINPPPTLQLLGGAATGSNNSCTTTLTTLTPASAIQQQQ
QQPQQQQVPQQQPPPTPRSSGGGRRGRHSHHQPGTAAHIASLMSVRTVRY
NRRNNPELEKRRIHHCDFVGCSKVYTKSSHLKAHQRIHTGEKPYTCQWPE
CEWRFARSDELTRHYRKHTGAKPFKCIVCERSFARSDHLALHMKRHLPKN
KASFLDH
BO05019.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dar1-PB | 751 | CG12029-PB | 1..751 | 1..751 | 4030 | 100 | Plus |
luna-PC | 570 | CG33473-PC | 208..570 | 361..747 | 515 | 36 | Plus |
luna-PD | 570 | CG33473-PD | 208..570 | 361..747 | 515 | 36 | Plus |
luna-PB | 570 | CG33473-PB | 208..570 | 361..747 | 515 | 36 | Plus |
sr-PE | 906 | CG7847-PE | 70..845 | 60..751 | 441 | 25.3 | Plus |
luna-PC | 570 | CG33473-PC | 157..466 | 237..534 | 175 | 25.4 | Plus |
luna-PD | 570 | CG33473-PD | 157..466 | 237..534 | 175 | 25.4 | Plus |
luna-PB | 570 | CG33473-PB | 157..466 | 237..534 | 175 | 25.4 | Plus |