Clone Sequence Records
BO05020.3prime Sequence
878 bp (741 high quality bases) assembled on 2005-12-02
> BO05020.3prime
ATGGTCTAGAAAGCTTGCCGTTGGGTTCACACCCTTCAGCGTTAGTGTGT
TATCCTCGTAGACCTCCAGAACGTCGGCCAAATGTTCGTTGTCTCTGGGC
TTCTTGAACTGCCGCTTCTTGTTGGCCGCCTTCTTGCGCTTGGGAATTGC
TTTCTTGAGGCCATGGTCCTGCATGGAGCGAATGCCCTGCTTCTCGAGGT
ACTCGTCAATCTTGGCGTCGTCCATTGCATCGACCGTAGCCGAGCGCCAT
AGCTTCTGGAACTCGTCGTCCACCGAAAAATTAGCAGTCCTGTCATTGTA
AAATAAAATCTTCTTTTTGTCAATGGGTCTAACAACAAAAAGTATTTCGG
CTGATCGGTTCTTCAGCACCTTTTCGCAGTGTGGTAGAGATTCCTGGACA
TCGTCCAGCAAAATGCCGCCCAGGCCCTTTAAATCATGTTGCTTGAGCAG
ACGCATCAGCGTTTTGCCATCCTTGATCTTGTAGACTGGCTTGAAACTGA
ACTTGGTGCCACATGGACTGGCTTCCACCTTGGGATTGTTGTGCAGAGCC
TCGCTAGCAAGCCAATTCTTAACGGATTGCCCAATGTCCAGCTGGTTGGT
CTCGTCCAGAATCTCATCGATGGTCAGGGGATGGTCGTCGCCGTCCTGGT
GACGTGTGCGCATGAATTTCACAATCTTGGCCAGCACTCCAAAGCGGTAC
TGGGAACTGCCGGACATGGTCTTGTATGTTGTGGCATCCAGCCTGGGAGC
ATTGGGCGGGCGCATTTTGCGCCTGGAATCATCGCTAGGCGGCGGTGGAG
CTGGTCTATCGGGCTTGGACTTCTTTTCCACGGTGGGCGTGGCCATCGCC
CGCTTTTTGAAGGCCTCGCGTTCGCGAA
BO05020.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1276-PA | 879 | TfIIEbeta-RA | 17..876 | 878..19 | 4300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIEbeta-RA | 1049 | CG1276-RA | 129..988 | 878..19 | 4300 | 100 | Minus |
TfIIEbeta-RB | 1121 | CG1276-RB | 247..1060 | 832..19 | 4070 | 100 | Minus |
TfIIEbeta-RB | 1121 | CG1276-RB | 129..174 | 878..833 | 230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:32:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4287687..4287981 | 564..270 | 1475 | 100 | Minus |
3L | 28110227 | 3L | 4288033..4288288 | 274..19 | 1280 | 100 | Minus |
3L | 28110227 | 3L | 4287464..4287626 | 727..565 | 815 | 100 | Minus |
3L | 28110227 | 3L | 4287284..4287388 | 832..728 | 525 | 100 | Minus |
3L | 28110227 | 3L | 4287166..4287211 | 878..833 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:32:52 has no hits.
BO05020.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:24 Download gff for
BO05020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1276-PA | 19..879 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:08 Download gff for
BO05020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1276-PA | 19..879 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:05 Download gff for
BO05020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 129..988 | 19..878 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:16:03 Download gff for
BO05020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 129..988 | 19..878 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:16:03 Download gff for
BO05020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4287166..4287211 | 833..878 | 100 | -> | Minus |
3L | 4287284..4287388 | 728..832 | 100 | -> | Minus |
3L | 4287464..4287626 | 565..727 | 100 | -> | Minus |
3L | 4287687..4287977 | 274..564 | 100 | -> | Minus |
3L | 4288034..4288288 | 19..273 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:05 Download gff for
BO05020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4287166..4287211 | 833..878 | 100 | -> | Minus |
arm_3L | 4287284..4287388 | 728..832 | 100 | -> | Minus |
arm_3L | 4287464..4287626 | 565..727 | 100 | -> | Minus |
arm_3L | 4287687..4287977 | 274..564 | 100 | -> | Minus |
arm_3L | 4288034..4288288 | 19..273 | 100 | | Minus |
BO05020.5prime Sequence
608 bp (595 high quality bases) assembled on 2005-12-02
> BO05020.5prime
GAAGTTATCAGTCGACATGGATCCAGCACTGCTTCGCGAACGCGAGGCCT
TCAAAAAGCGGGCGATGGCCACGCCCACCGTGGAAAAGAAGTCCAAGCCC
GATAGACCAGCTCCACCGCCGCCTAGCGATGATTCCAGGCGCAAAATGCG
CCCGCCCAATGCTCCCAGGCTGGATGCCACAACATACAAGACCATGTCCG
GCAGTTCCCAGTACCGCTTTGGAGTGCTGGCCAAGATTGTGAAATTCATG
CGCACACGTCACCAGGACGGCGACGACCATCCCCTGACCATCGATGAGAT
TCTGGACGAGACCAACCAGCTGGACATTGGGCAATCCGTTAAGAATTGGC
TTGCTAGCGAGGCTCTGCACAACAATCCCAAGGTGGAAGCCAGTCCATGT
GGCACCAAGTTCAGTTTCAAGCCAGTCTACAAGATCAAGGATGGCAAAAC
GCTGATGCGTCTGCTCAAGCAACATGATTTAAAGGGCCTGGGCGGCATTT
TGCTGGACGATGTCCAGGAATCTCTACCACACTGCGAAAAGGTGCTGAAG
AACCGATCAGCCGAAATACTTTTTGTTGTTAGACCCATTGACAAAAAGAA
GATTTTAT
BO05020.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1276-PA | 879 | TfIIEbeta-RA | 1..592 | 17..608 | 2960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIEbeta-RA | 1049 | CG1276-RA | 108..704 | 12..608 | 2970 | 99.8 | Plus |
TfIIEbeta-RB | 1121 | CG1276-RB | 247..776 | 79..608 | 2650 | 100 | Plus |
TfIIEbeta-RB | 1121 | CG1276-RB | 108..174 | 12..78 | 320 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4287687..4287948 | 347..608 | 1310 | 100 | Plus |
3L | 28110227 | 3L | 4287464..4287626 | 184..346 | 815 | 100 | Plus |
3L | 28110227 | 3L | 4287284..4287388 | 79..183 | 525 | 100 | Plus |
3L | 28110227 | 3L | 4287145..4287211 | 12..78 | 320 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:33:06 has no hits.
BO05020.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:25 Download gff for
BO05020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1276-PA | 1..592 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:09 Download gff for
BO05020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1276-PA | 1..592 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:07 Download gff for
BO05020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 105..704 | 9..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:16:58 Download gff for
BO05020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 105..704 | 9..608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:16:58 Download gff for
BO05020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4287142..4287211 | 9..78 | 97 | -> | Plus |
3L | 4287284..4287388 | 79..183 | 100 | -> | Plus |
3L | 4287464..4287626 | 184..346 | 100 | -> | Plus |
3L | 4287687..4287948 | 347..608 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:07 Download gff for
BO05020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4287142..4287211 | 9..78 | 97 | -> | Plus |
arm_3L | 4287284..4287388 | 79..183 | 100 | -> | Plus |
arm_3L | 4287464..4287626 | 184..346 | 100 | -> | Plus |
arm_3L | 4287687..4287948 | 347..608 | 100 | | Plus |
BO05020.complete Sequence
910 bp (910 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629942
> BO05020.complete
GAAGTTATCAGTCGACATGGATCCAGCACTGCTTCGCGAACGCGAGGCCT
TCAAAAAGCGGGCGATGGCCACGCCCACCGTGGAAAAGAAGTCCAAGCCC
GATAGACCAGCTCCACCGCCGCCTAGCGATGATTCCAGGCGCAAAATGCG
CCCGCCCAATGCTCCCAGGCTGGATGCCACAACATACAAGACCATGTCCG
GCAGTTCCCAGTACCGCTTTGGAGTGCTGGCCAAGATTGTGAAATTCATG
CGCACACGTCACCAGGACGGCGACGACCATCCCCTGACCATCGATGAGAT
TCTGGACGAGACCAACCAGCTGGACATTGGGCAATCCGTTAAGAATTGGC
TTGCTAGCGAGGCTCTGCACAACAATCCCAAGGTGGAAGCCAGTCCATGT
GGCACCAAGTTCAGTTTCAAGCCAGTCTACAAGATCAAGGATGGCAAAAC
GCTGATGCGTCTGCTCAAGCAACATGATTTAAAGGGCCTGGGCGGCATTT
TGCTGGACGATGTCCAGGAATCTCTACCACACTGCGAAAAGGTGCTGAAG
AACCGATCAGCCGAAATACTTTTTGTTGTTAGACCCATTGACAAAAAGAA
GATTTTATTTTACAATGACAGGACTGCTAATTTTTCGGTGGACGACGAGT
TCCAGAAGCTATGGCGCTCGGCTACGGTCGATGCAATGGACGACGCCAAG
ATTGACGAGTACCTCGAGAAGCAGGGCATTCGCTCCATGCAGGACCATGG
CCTCAAGAAAGCAATTCCCAAGCGCAAGAAGGCGGCCAACAAGAAGCGGC
AGTTCAAGAAGCCCAGAGACAACGAACATTTGGCCGACGTTCTGGAGGTC
TACGAGGATAACACACTAACGCTGAAGGGTGTGAACCCAACGGCAAGCTT
TCTAGACCAT
BO05020.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIEbeta-RA | 879 | CG1276-PA | 1..876 | 17..892 | 4380 | 100 | Plus |
TfIIEbeta-RB | 750 | CG1276-PB | 1..747 | 146..892 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIEbeta-RA | 1049 | CG1276-RA | 108..988 | 12..892 | 4390 | 99.9 | Plus |
TfIIEbeta-RB | 1121 | CG1276-RB | 247..1060 | 79..892 | 4070 | 100 | Plus |
TfIIEbeta-RB | 1121 | CG1276-RB | 108..174 | 12..78 | 320 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:27:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4287687..4287981 | 347..641 | 1475 | 100 | Plus |
3L | 28110227 | 3L | 4288033..4288288 | 637..892 | 1280 | 100 | Plus |
3L | 28110227 | 3L | 4287464..4287626 | 184..346 | 815 | 100 | Plus |
3L | 28110227 | 3L | 4287284..4287388 | 79..183 | 525 | 100 | Plus |
3L | 28110227 | 3L | 4287145..4287211 | 12..78 | 320 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:27:46 has no hits.
BO05020.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:45 Download gff for
BO05020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 1..879 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:54 Download gff for
BO05020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 105..988 | 9..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:31 Download gff for
BO05020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 113..988 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:45 Download gff for
BO05020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 105..988 | 9..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:42 Download gff for
BO05020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 113..988 | 17..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:42 Download gff for
BO05020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4288034..4288288 | 638..894 | 99 | | Plus |
3L | 4287150..4287211 | 17..78 | 100 | -> | Plus |
3L | 4287284..4287388 | 79..183 | 100 | -> | Plus |
3L | 4287464..4287626 | 184..346 | 100 | -> | Plus |
3L | 4287687..4287977 | 347..637 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:31 Download gff for
BO05020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4288034..4288288 | 638..894 | 99 | | Plus |
arm_3L | 4287150..4287211 | 17..78 | 100 | -> | Plus |
arm_3L | 4287284..4287388 | 79..183 | 100 | -> | Plus |
arm_3L | 4287464..4287626 | 184..346 | 100 | -> | Plus |
arm_3L | 4287687..4287977 | 347..637 | 100 | -> | Plus |
BO05020.pep Sequence
Translation from 16 to 910
> BO05020.pep
MDPALLREREAFKKRAMATPTVEKKSKPDRPAPPPPSDDSRRKMRPPNAP
RLDATTYKTMSGSSQYRFGVLAKIVKFMRTRHQDGDDHPLTIDEILDETN
QLDIGQSVKNWLASEALHNNPKVEASPCGTKFSFKPVYKIKDGKTLMRLL
KQHDLKGLGGILLDDVQESLPHCEKVLKNRSAEILFVVRPIDKKKILFYN
DRTANFSVDDEFQKLWRSATVDAMDDAKIDEYLEKQGIRSMQDHGLKKAI
PKRKKAANKKRQFKKPRDNEHLADVLEVYEDNTLTLKGVNPTASFLDH
BO05020.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIEbeta-PA | 292 | CG1276-PA | 1..292 | 1..292 | 1525 | 100 | Plus |
TfIIEbeta-PB | 249 | CG1276-PB | 1..249 | 44..292 | 1300 | 100 | Plus |