Clone BO05020 Report

Search the DGRC for BO05020

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptTfIIEbeta-RA
Protein status:BO05020.pep: validated full length
Sequenced Size:910

Clone Sequence Records

BO05020.3prime Sequence

878 bp (741 high quality bases) assembled on 2005-12-02

> BO05020.3prime
ATGGTCTAGAAAGCTTGCCGTTGGGTTCACACCCTTCAGCGTTAGTGTGT
TATCCTCGTAGACCTCCAGAACGTCGGCCAAATGTTCGTTGTCTCTGGGC
TTCTTGAACTGCCGCTTCTTGTTGGCCGCCTTCTTGCGCTTGGGAATTGC
TTTCTTGAGGCCATGGTCCTGCATGGAGCGAATGCCCTGCTTCTCGAGGT
ACTCGTCAATCTTGGCGTCGTCCATTGCATCGACCGTAGCCGAGCGCCAT
AGCTTCTGGAACTCGTCGTCCACCGAAAAATTAGCAGTCCTGTCATTGTA
AAATAAAATCTTCTTTTTGTCAATGGGTCTAACAACAAAAAGTATTTCGG
CTGATCGGTTCTTCAGCACCTTTTCGCAGTGTGGTAGAGATTCCTGGACA
TCGTCCAGCAAAATGCCGCCCAGGCCCTTTAAATCATGTTGCTTGAGCAG
ACGCATCAGCGTTTTGCCATCCTTGATCTTGTAGACTGGCTTGAAACTGA
ACTTGGTGCCACATGGACTGGCTTCCACCTTGGGATTGTTGTGCAGAGCC
TCGCTAGCAAGCCAATTCTTAACGGATTGCCCAATGTCCAGCTGGTTGGT
CTCGTCCAGAATCTCATCGATGGTCAGGGGATGGTCGTCGCCGTCCTGGT
GACGTGTGCGCATGAATTTCACAATCTTGGCCAGCACTCCAAAGCGGTAC
TGGGAACTGCCGGACATGGTCTTGTATGTTGTGGCATCCAGCCTGGGAGC
ATTGGGCGGGCGCATTTTGCGCCTGGAATCATCGCTAGGCGGCGGTGGAG
CTGGTCTATCGGGCTTGGACTTCTTTTCCACGGTGGGCGTGGCCATCGCC
CGCTTTTTGAAGGCCTCGCGTTCGCGAA

BO05020.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1276-PA 879 TfIIEbeta-RA 17..876 878..19 4300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIEbeta-RA 1049 CG1276-RA 129..988 878..19 4300 100 Minus
TfIIEbeta-RB 1121 CG1276-RB 247..1060 832..19 4070 100 Minus
TfIIEbeta-RB 1121 CG1276-RB 129..174 878..833 230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4287687..4287981 564..270 1475 100 Minus
3L 28110227 3L 4288033..4288288 274..19 1280 100 Minus
3L 28110227 3L 4287464..4287626 727..565 815 100 Minus
3L 28110227 3L 4287284..4287388 832..728 525 100 Minus
3L 28110227 3L 4287166..4287211 878..833 230 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:32:52 has no hits.

BO05020.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:24 Download gff for BO05020.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1276-PA 19..879 18..876 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:08 Download gff for BO05020.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1276-PA 19..879 18..876 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:05 Download gff for BO05020.3prime
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 129..988 19..878 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:16:03 Download gff for BO05020.3prime
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 129..988 19..878 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:16:03 Download gff for BO05020.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4287166..4287211 833..878 100 -> Minus
3L 4287284..4287388 728..832 100 -> Minus
3L 4287464..4287626 565..727 100 -> Minus
3L 4287687..4287977 274..564 100 -> Minus
3L 4288034..4288288 19..273 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:05 Download gff for BO05020.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4287166..4287211 833..878 100 -> Minus
arm_3L 4287284..4287388 728..832 100 -> Minus
arm_3L 4287464..4287626 565..727 100 -> Minus
arm_3L 4287687..4287977 274..564 100 -> Minus
arm_3L 4288034..4288288 19..273 100   Minus

BO05020.5prime Sequence

608 bp (595 high quality bases) assembled on 2005-12-02

> BO05020.5prime
GAAGTTATCAGTCGACATGGATCCAGCACTGCTTCGCGAACGCGAGGCCT
TCAAAAAGCGGGCGATGGCCACGCCCACCGTGGAAAAGAAGTCCAAGCCC
GATAGACCAGCTCCACCGCCGCCTAGCGATGATTCCAGGCGCAAAATGCG
CCCGCCCAATGCTCCCAGGCTGGATGCCACAACATACAAGACCATGTCCG
GCAGTTCCCAGTACCGCTTTGGAGTGCTGGCCAAGATTGTGAAATTCATG
CGCACACGTCACCAGGACGGCGACGACCATCCCCTGACCATCGATGAGAT
TCTGGACGAGACCAACCAGCTGGACATTGGGCAATCCGTTAAGAATTGGC
TTGCTAGCGAGGCTCTGCACAACAATCCCAAGGTGGAAGCCAGTCCATGT
GGCACCAAGTTCAGTTTCAAGCCAGTCTACAAGATCAAGGATGGCAAAAC
GCTGATGCGTCTGCTCAAGCAACATGATTTAAAGGGCCTGGGCGGCATTT
TGCTGGACGATGTCCAGGAATCTCTACCACACTGCGAAAAGGTGCTGAAG
AACCGATCAGCCGAAATACTTTTTGTTGTTAGACCCATTGACAAAAAGAA
GATTTTAT

BO05020.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1276-PA 879 TfIIEbeta-RA 1..592 17..608 2960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIEbeta-RA 1049 CG1276-RA 108..704 12..608 2970 99.8 Plus
TfIIEbeta-RB 1121 CG1276-RB 247..776 79..608 2650 100 Plus
TfIIEbeta-RB 1121 CG1276-RB 108..174 12..78 320 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4287687..4287948 347..608 1310 100 Plus
3L 28110227 3L 4287464..4287626 184..346 815 100 Plus
3L 28110227 3L 4287284..4287388 79..183 525 100 Plus
3L 28110227 3L 4287145..4287211 12..78 320 98.5 Plus
Blast to na_te.dros performed on 2015-02-12 06:33:06 has no hits.

BO05020.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:25 Download gff for BO05020.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1276-PA 1..592 17..608 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:09 Download gff for BO05020.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1276-PA 1..592 17..608 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:07 Download gff for BO05020.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 105..704 9..608 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:16:58 Download gff for BO05020.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 105..704 9..608 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:16:58 Download gff for BO05020.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4287142..4287211 9..78 97 -> Plus
3L 4287284..4287388 79..183 100 -> Plus
3L 4287464..4287626 184..346 100 -> Plus
3L 4287687..4287948 347..608 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:07 Download gff for BO05020.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4287142..4287211 9..78 97 -> Plus
arm_3L 4287284..4287388 79..183 100 -> Plus
arm_3L 4287464..4287626 184..346 100 -> Plus
arm_3L 4287687..4287948 347..608 100   Plus

BO05020.complete Sequence

910 bp (910 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629942

> BO05020.complete
GAAGTTATCAGTCGACATGGATCCAGCACTGCTTCGCGAACGCGAGGCCT
TCAAAAAGCGGGCGATGGCCACGCCCACCGTGGAAAAGAAGTCCAAGCCC
GATAGACCAGCTCCACCGCCGCCTAGCGATGATTCCAGGCGCAAAATGCG
CCCGCCCAATGCTCCCAGGCTGGATGCCACAACATACAAGACCATGTCCG
GCAGTTCCCAGTACCGCTTTGGAGTGCTGGCCAAGATTGTGAAATTCATG
CGCACACGTCACCAGGACGGCGACGACCATCCCCTGACCATCGATGAGAT
TCTGGACGAGACCAACCAGCTGGACATTGGGCAATCCGTTAAGAATTGGC
TTGCTAGCGAGGCTCTGCACAACAATCCCAAGGTGGAAGCCAGTCCATGT
GGCACCAAGTTCAGTTTCAAGCCAGTCTACAAGATCAAGGATGGCAAAAC
GCTGATGCGTCTGCTCAAGCAACATGATTTAAAGGGCCTGGGCGGCATTT
TGCTGGACGATGTCCAGGAATCTCTACCACACTGCGAAAAGGTGCTGAAG
AACCGATCAGCCGAAATACTTTTTGTTGTTAGACCCATTGACAAAAAGAA
GATTTTATTTTACAATGACAGGACTGCTAATTTTTCGGTGGACGACGAGT
TCCAGAAGCTATGGCGCTCGGCTACGGTCGATGCAATGGACGACGCCAAG
ATTGACGAGTACCTCGAGAAGCAGGGCATTCGCTCCATGCAGGACCATGG
CCTCAAGAAAGCAATTCCCAAGCGCAAGAAGGCGGCCAACAAGAAGCGGC
AGTTCAAGAAGCCCAGAGACAACGAACATTTGGCCGACGTTCTGGAGGTC
TACGAGGATAACACACTAACGCTGAAGGGTGTGAACCCAACGGCAAGCTT
TCTAGACCAT

BO05020.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIEbeta-RA 879 CG1276-PA 1..876 17..892 4380 100 Plus
TfIIEbeta-RB 750 CG1276-PB 1..747 146..892 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIEbeta-RA 1049 CG1276-RA 108..988 12..892 4390 99.9 Plus
TfIIEbeta-RB 1121 CG1276-RB 247..1060 79..892 4070 100 Plus
TfIIEbeta-RB 1121 CG1276-RB 108..174 12..78 320 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4287687..4287981 347..641 1475 100 Plus
3L 28110227 3L 4288033..4288288 637..892 1280 100 Plus
3L 28110227 3L 4287464..4287626 184..346 815 100 Plus
3L 28110227 3L 4287284..4287388 79..183 525 100 Plus
3L 28110227 3L 4287145..4287211 12..78 320 98.5 Plus
Blast to na_te.dros performed on 2014-11-26 16:27:46 has no hits.

BO05020.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:45 Download gff for BO05020.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 1..879 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:54 Download gff for BO05020.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 105..988 9..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:31 Download gff for BO05020.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 113..988 17..894 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:45 Download gff for BO05020.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 105..988 9..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:42 Download gff for BO05020.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 113..988 17..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:42 Download gff for BO05020.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4288034..4288288 638..894 99   Plus
3L 4287150..4287211 17..78 100 -> Plus
3L 4287284..4287388 79..183 100 -> Plus
3L 4287464..4287626 184..346 100 -> Plus
3L 4287687..4287977 347..637 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:31 Download gff for BO05020.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4288034..4288288 638..894 99   Plus
arm_3L 4287150..4287211 17..78 100 -> Plus
arm_3L 4287284..4287388 79..183 100 -> Plus
arm_3L 4287464..4287626 184..346 100 -> Plus
arm_3L 4287687..4287977 347..637 100 -> Plus

BO05020.pep Sequence

Translation from 16 to 910

> BO05020.pep
MDPALLREREAFKKRAMATPTVEKKSKPDRPAPPPPSDDSRRKMRPPNAP
RLDATTYKTMSGSSQYRFGVLAKIVKFMRTRHQDGDDHPLTIDEILDETN
QLDIGQSVKNWLASEALHNNPKVEASPCGTKFSFKPVYKIKDGKTLMRLL
KQHDLKGLGGILLDDVQESLPHCEKVLKNRSAEILFVVRPIDKKKILFYN
DRTANFSVDDEFQKLWRSATVDAMDDAKIDEYLEKQGIRSMQDHGLKKAI
PKRKKAANKKRQFKKPRDNEHLADVLEVYEDNTLTLKGVNPTASFLDH

BO05020.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIEbeta-PA 292 CG1276-PA 1..292 1..292 1525 100 Plus
TfIIEbeta-PB 249 CG1276-PB 1..249 44..292 1300 100 Plus