Clone Sequence Records
BO05021.3prime Sequence
862 bp (782 high quality bases) assembled on 2005-12-02
> BO05021.3prime
ATGGTCTAGAAAGCTTGCATGACGATAATTATCCTGCTGCTGCTGCGAGG
ACCCAGAACTGTTGCTGCGACATCTCTTGTTCTGAGCCGGGGACTCGCCC
ATATCGAGACTTTCGTTATCGCTATCCATGGTCTCGCTGCAATCGCCATC
GTTATCGCCGCCCATATCGTCCTGTTTCCTTTTGGCCGTGGCCATTTCCG
CCGCATGCCGTTTGCGCCATTTGGTGCGACGATTCTGGAACCAGACCTTA
ACCTGCGACTCGGACATTCCTAAGGCGTAAGCGAGCTTGGCACGCTCTGG
TCCGGCCAGATACTTGGTTTGCTCGAATGTCTTCTCCAGGGCGAAGATCT
GCTGACCACTGAATGTTGGGCGGGTGTGTTTCTTTTTGCCATCCTTGTCG
TTCGATGGATGATGCTGATGCGATTGAGACAGATTGGCGGACATCGTGTT
GGAGAGCCGTTCGCGCCACGCGATGGGATTGGCCACCAGTCCCTGTAATC
CTGGCCAGTACAGGTGCGTGCGGTCCACTATGTGTCCGGCGTGGGTCTTC
AGTGGCGCCCCTTGGCTCTGCGATAGATACTGGGCCATTCCCGCTGCTGC
GGCGGCGATCGAGAAGCGGGGAATGCCAGCTCCTGTTAAAGCACTTAGAC
CCGCCGATGTCACCGGCGGTGGTTTGGAGAGGATGGTATCGATGCCGTGC
GGATTGGGTGCACCCTGGCTGTTGGTGTTCGTAGTCGTGGTGGAGGACGA
CGATGAGCTGCCACCGGATCCGCGATCACTGATCAAATGCGAATTCGGGC
TGTGGCTATAGGACAAGCCATTTGCCGACGCCGACGATCCACCGACTCCT
TGACCCTTCATT
BO05021.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13475-PA | 1542 | HGTX-RA | 696..1539 | 862..19 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HGTX-RA | 3014 | CG13475-RA | 1523..2366 | 862..19 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:26:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14597786..14598018 | 630..862 | 1165 | 100 | Plus |
| 3L | 28110227 | 3L | 14583870..14584099 | 19..248 | 1150 | 100 | Plus |
| 3L | 28110227 | 3L | 14589999..14590197 | 245..443 | 995 | 100 | Plus |
| 3L | 28110227 | 3L | 14595890..14596077 | 444..631 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:26:49 has no hits.
BO05021.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:26 Download gff for
BO05021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HGTX-PA | 696..1542 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:11 Download gff for
BO05021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13475-PA | 696..1542 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:19 Download gff for
BO05021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HGTX-RA | 1523..2369 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:47:56 Download gff for
BO05021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HGTX-RA | 1523..2369 | 15..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:47:56 Download gff for
BO05021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14583866..14584097 | 15..246 | 99 | <- | Plus |
| 3L | 14590001..14590197 | 247..443 | 100 | <- | Plus |
| 3L | 14595890..14596075 | 444..629 | 100 | <- | Plus |
| 3L | 14597786..14598018 | 630..862 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:19 Download gff for
BO05021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14576966..14577197 | 15..246 | 99 | <- | Plus |
| arm_3L | 14583101..14583297 | 247..443 | 100 | <- | Plus |
| arm_3L | 14588990..14589175 | 444..629 | 100 | <- | Plus |
| arm_3L | 14590886..14591118 | 630..862 | 100 | | Plus |
BO05021.5prime Sequence
867 bp (832 high quality bases) assembled on 2005-12-02
> BO05021.5prime
GAAGTTATCAGTCGACATGGATCTGATAAATCCGTATATGCGCCATCATA
GTTTTGCGGCCGCCGCCCAGGGAAGTCCCCCGTCGGCGGCTCAACGTCAT
CATTTGGCGGCGGCCATGAGCAATGGCTTCGCGGATGTCCATGCCCATGC
GATGGCGGCGGCGGACTATCAACAACAGTTGGCCGATTACCACAGTGCAG
CGGCGGCAGCGGCCGTTTATGCCAACAACAATAATAATAATAACAATAAT
AGCAGTAACAACAACAACAGCAGTCCGCTAATGTTGCTAAAGGCGGCACA
TGGCGGAGGTCTCAAGGATTCGGACTCGCCATCGACGACACCGCCACCCG
CCTCTTCTAGACTCCATTCTGACTCCTCGCCATCTCCGCGATACGAACAC
AATTCCAGTCCCGGTGTGGACAGTGCCAAGTCGTATGCCTTGAGCCAGAG
GAGCAGCGGAGCGGAGGATCCATGCCAGACCAGCGAATCCGCCAGTCCAC
CGCCGCAGGGCCAGAACGACTACAGTCCCGAGAATCTCAGCAGCCAGAGG
GCAAAGTTCCAGCACCATCATGGAGTGAACCCACTGGCTTTGCACAATGC
CAACCATGCCGGAAACCCCGGATGTCACAACAACAATAACCACATGGACC
ACAAGCTCCCACTGAGTTTTCTCGGTCCCCCGCTGGCCGCTCTTCACTCG
ATGACCACGGAAATGAAGGGTCAAGGAGTCGGTGGATCGTCGGCGTCGGC
AAATGGCTTGTCCTATAGCCACAGCCCGAATTCGCATTTGATCAGTGATC
GCGGATCCGGTGGCAGCTCATCGTCGTCCTCCACCACGACTACGAACACC
AACAGCCAGGGTGCACC
BO05021.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13475-PA | 1542 | HGTX-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HGTX-RA | 3014 | CG13475-RA | 824..1678 | 13..867 | 4260 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14597863..14598717 | 867..13 | 4260 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 10:13:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib3 | 2883 | transib3 TRANSIB3 2883bp | 329..355 | 653..627 | 108 | 88.9 | Minus |
BO05021.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:27 Download gff for
BO05021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HGTX-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:12 Download gff for
BO05021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13475-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:54:31 Download gff for
BO05021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HGTX-RA | 824..1678 | 13..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:24 Download gff for
BO05021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HGTX-RA | 824..1678 | 13..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:24 Download gff for
BO05021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14597863..14598717 | 13..867 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:54:31 Download gff for
BO05021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14590963..14591817 | 13..867 | 99 | | Minus |
BO05021.complete Sequence
1573 bp (1573 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629943
> BO05021.complete
GAAGTTATCAGTCGACATGGATCTGATAAATCCGTATATGCGCCATCATA
GTTTTGCGGCCGCCGCCCAGGGAAGTCCCCCGTCGGCGGCTCAACGTCAT
CATTTGGCGGCGGCCATGAGCAATGGCTTCGCGGATGTCCATGCCCATGC
GATGGCGGCGGCGGACTATCAACAACAGTTGGCCGATTACCACAGTGCAG
CGGCGGCAGCGGCCGTTTATGCCAACAACAATAATAATAATAACAATAAT
AGCAGTAACAACAACAACAGCAGTCCGCTAATGTTGCTAAAGGCGGCACA
TGGCGGAGGTCTCAAGGATTCGGACTCGCCATCGACGACACCGCCACCCG
CCTCTTCTAGACTCCATTCTGACTCCTCGCCATCTCCGCGATACGAACAC
AATTCCAGTCCCGGTGTGGACAGTGCCAAGTCGTATGCCTTGAGCCAGAG
GAGCAGCGGAGCGGAGGATCCATGCCAGACCAGCGAATCCGCCAGTCCAC
CGCCGCAGGGCCAGAACGACTACAGTCCCGAGAATCTCAGCAGCCAGAGG
GCAAAGTTCCAGCACCATCATGGAGTGAACCCACTGGCTTTGCACAATGC
CAACCATGCCGGAAACCCCGGATGTCACAACAACAATAACCACATGGACC
ACAAGCTCCCACTGAGTTTTCTCGGTCCCCCGCTGGCCGCTCTTCACTCG
ATGACCACGGAAATGAAGGGTCAAGGAGTCGGTGGATCGTCGGCGTCGGC
AAATGGCTTGTCCTATAGCCACAGCCCGAATTCGCATTTGATCAGTGATC
GCGGATCCGGTGGCAGCTCATCGTCGTCCTCCACCACGACTACGAACACC
AACAGCCAGGGTGCACCCAATCCGCACGGCATCGATACCATCCTCTCCAA
ACCACCGCCGGTGACATCGGCGGGTCTAAGTGCTTTAACAGGAGCTGGCA
TTCCCCGCTTCTCGATCGCCGCCGCAGCAGCGGGAATGGCCCAGTATCTA
TCGCAGAGCCAAGGGGCGCCACTGAAGACCCACGCCGGACACATAGTGGA
CCGCACGCACCTGTACTGGCCAGGATTACAGGGACTGGTGGCCAATCCCA
TCGCGTGGCGCGAACGGCTCTCCAACACGATGTCCGCCAATCTGTCTCAA
TCGCATCAGCATCATCCATCGAACGACAAGGATGGCAAAAAGAAACACAC
CCGCCCAACATTCAGTGGTCAGCAGATCTTCGCCCTGGAGAAGACATTCG
AGCAAACCAAGTATCTGGCCGGACCAGAGCGTGCCAAGCTCGCTTACGCC
TTAGGAATGTCCGAGTCGCAGGTTAAGGTCTGGTTCCAGAATCGTCGCAC
CAAATGGCGCAAACGGCATGCGGCGGAAATGGCCACGGCCAAAAGGAAAC
AGGACGATATGGGCGGCGATAACGATGGCGATTGCAGCGAGACCATGGAT
AGCGATAACGAAAGTCTCGATATGGGCGAGTCCCCGGCTCAGAACAAGAG
ATGTCGCAGCAACAGTTCTGGGTCCTCGCAGCAGCAGCAGGATAATTATC
GTCATGCAAGCTTTCTAGACCAT
BO05021.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:54:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HGTX-RA | 1542 | CG13475-PA | 1..1539 | 17..1555 | 7695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HGTX-RA | 3014 | CG13475-RA | 824..2366 | 13..1555 | 7700 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14597786..14598717 | 944..13 | 4645 | 99.9 | Minus |
| 3L | 28110227 | 3L | 14583870..14584099 | 1555..1326 | 1150 | 100 | Minus |
| 3L | 28110227 | 3L | 14589999..14590197 | 1329..1131 | 995 | 100 | Minus |
| 3L | 28110227 | 3L | 14595890..14596077 | 1130..943 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:54:06 has no hits.
BO05021.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:46 Download gff for
BO05021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HGTX-RB | 273..1818 | 13..1559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:56 Download gff for
BO05021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HGTX-RB | 273..1818 | 13..1559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:23 Download gff for
BO05021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HGTX-RA | 828..2366 | 17..1557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:47 Download gff for
BO05021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HGTX-RB | 273..1818 | 13..1559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:33 Download gff for
BO05021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HGTX-RA | 828..2366 | 17..1557 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:33 Download gff for
BO05021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14583868..14584097 | 1328..1557 | 99 | <- | Minus |
| 3L | 14590001..14590197 | 1131..1327 | 100 | <- | Minus |
| 3L | 14595890..14596075 | 945..1130 | 100 | <- | Minus |
| 3L | 14597786..14598713 | 17..944 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:23 Download gff for
BO05021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14583101..14583297 | 1131..1327 | 100 | <- | Minus |
| arm_3L | 14588990..14589175 | 945..1130 | 100 | <- | Minus |
| arm_3L | 14576968..14577197 | 1328..1557 | 99 | <- | Minus |
| arm_3L | 14590886..14591813 | 17..944 | 100 | | Minus |
BO05021.pep Sequence
Translation from 16 to 1573
> BO05021.pep
MDLINPYMRHHSFAAAAQGSPPSAAQRHHLAAAMSNGFADVHAHAMAAAD
YQQQLADYHSAAAAAAVYANNNNNNNNNSSNNNNSSPLMLLKAAHGGGLK
DSDSPSTTPPPASSRLHSDSSPSPRYEHNSSPGVDSAKSYALSQRSSGAE
DPCQTSESASPPPQGQNDYSPENLSSQRAKFQHHHGVNPLALHNANHAGN
PGCHNNNNHMDHKLPLSFLGPPLAALHSMTTEMKGQGVGGSSASANGLSY
SHSPNSHLISDRGSGGSSSSSSTTTTNTNSQGAPNPHGIDTILSKPPPVT
SAGLSALTGAGIPRFSIAAAAAGMAQYLSQSQGAPLKTHAGHIVDRTHLY
WPGLQGLVANPIAWRERLSNTMSANLSQSHQHHPSNDKDGKKKHTRPTFS
GQQIFALEKTFEQTKYLAGPERAKLAYALGMSESQVKVWFQNRRTKWRKR
HAAEMATAKRKQDDMGGDNDGDCSETMDSDNESLDMGESPAQNKRCRSNS
SGSSQQQQDNYRHASFLDH
BO05021.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HGTX-PA | 513 | CG13475-PA | 1..513 | 1..513 | 2720 | 100 | Plus |
| CG18599-PA | 475 | CG18599-PA | 45..375 | 116..451 | 215 | 24.7 | Plus |
| Vsx1-PB | 837 | CG4136-PB | 221..464 | 235..456 | 208 | 28.3 | Plus |
| Vsx1-PA | 837 | CG4136-PA | 221..464 | 235..456 | 208 | 28.3 | Plus |
| C15-PA | 339 | CG7937-PA | 91..279 | 250..454 | 197 | 31.8 | Plus |
