Clone Sequence Records
BO05022.3prime Sequence
896 bp (760 high quality bases) assembled on 2005-12-02
> BO05022.3prime
ATGGTCTAGAAAGCTTGCGATCTTGCGCTGACTGTACATGTCGGAGATGA
GGCGCACAATGGTGATGTCGCCGATGGTCTTTCGGAAGAACAGCTCCTCG
ATGGTGAAGCTTGAGACCTTGTGCATCAGCTGCACCACGCCCAAGAGCGT
CTGGAATCGCATGGGCTGCGAGGGATGGGTCCTCTGGATGTAGTTGTGCA
GCGCACTCCGGGCATCGTTGTGCATGGCCGCCACTTTTCCCGACTCCAGA
AGACCCCTGGATTCAGCAGAGGCCGAGGAGTTCGGGCTGCCGCTTCCTGT
CAGGATTGAGCTGTTGGCTAAATCCTCGGTAGAACTTGCCGACGGTGGTG
ACTTACGGAAGAGCGAAATAGCCCTCAGACACTCGTACTCGGTGCTGTCA
ATGTTCAGATGGCACAGTTGGTTCAGCACCTCCTGGAAGGCGTGCACCTC
GCGGGTCACCATGCCCATGATCTCCCGGTTGGCATTCTCGGACTCGTAGA
CGAACAGCAGCTGGGCGAAATTCATGGGCATTAGGTACTGGGCCATGGCC
AGGATGAAGAACTCCTTCCAGGACTCCTCCAGCAGGAGCAGCTGATCCGG
CATGGGCAGTTCGGTGAAGGCCCGTACGCTCTTGATCCAGTTGACGTTCT
TGAATAGGTGTTCCGCCGCGGTTTCCTTGATGTGCTCAGCTGCCATCAGC
GGAGGAGTGGGGGGCAGGGCCCGAGTGGCCAGGGCATTCATGTAGGCGGC
GGTGGGCGAGAAGAAACCGTGGTGTCCTTGGTGCACCGGGTGATGGGGCA
CTCGTGGCACGGATAAGTCCAAGACAGCGGCAGCCGATGGTGGCGGCTGG
AAGGCAGCCATGTGAGCAGGATGATGACCAGCCCTCTGGGGCAGGC
BO05022.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1378-PA | 1359 | tll-RA | 479..1356 | 896..19 | 4390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tll-RA | 1965 | CG1378-RA | 711..1588 | 896..19 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30853146..30854023 | 896..19 | 4390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:33:18 has no hits.
BO05022.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:28 Download gff for
BO05022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1378-PA | 479..1359 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:13 Download gff for
BO05022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1378-PA | 479..1359 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:10 Download gff for
BO05022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 711..1592 | 15..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:17:40 Download gff for
BO05022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 711..1592 | 15..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:17:40 Download gff for
BO05022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30853146..30854027 | 15..896 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:10 Download gff for
BO05022.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26678868..26679749 | 15..896 | 99 | | Minus |
BO05022.5prime Sequence
819 bp (818 high quality bases) assembled on 2005-12-02
> BO05022.5prime
GAAGTTATCAGTCGACATGCAGTCGTCGGAGGGTTCACCAGACATGATGG
ATCAGAAATACAACAGCGTGCGTCTTTCGCCAGCGGCATCGAGTCGCATT
CTATACCATGTGCCCTGCAAAGTCTGCAGAGATCACAGCTCCGGCAAGCA
TTACGGCATCTACGCCTGTGATGGCTGCGCCGGATTCTTCAAGAGGAGCA
TTCGGAGATCCCGGCAGTATGTGTGCAAGTCGCAGAAGCAGGGACTCTGT
GTGGTGGACAAGACGCACAGGAACCAATGTAGGGCTTGCCGACTGAGGAA
GTGCTTTGAGGTCGGAATGAACAAGGATGCAGTGCAGCACGAGCGGGGAC
CGCGGAACTCCACTCTGCGTCGCCACATGGCCATGTACAAGGATGCCATG
ATGGGCGCCGGCGAGATGCCACAAATACCCGCCGAAATTCTGATGAACAC
GGCTGCCTTGACCGGCTTTCCTGGAGTACCGATGCCCATGCCTGGCCTGC
CCCAGAGGGCTGGTCATCATCCTGCTCACATGGCTGCCTTCCAGCCGCCA
CCATCGGCTGCCGCTGTCTTGGACTTATCCGTGCCACGAGTGCCCCATCA
CCCGGTGCACCAAGGACACCACGGTTTCTTCTCGCCCACCGCCGCCTACA
TGAATGCCCTGGCCACTCGGGCCCTGCCCCCCACTCCTCCGCTGATGGCA
GCTGAGCACATCAAGGAAACCGCGGCGGAACACCTATTCAAGAACGTCAA
CTGGATCAAGAGCGTACGGGCCTTCACCGAACTGCCCATGCCGGATCAGC
TGCTCCTGCTGGAGGAGTC
BO05022.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1378-PA | 1359 | tll-RA | 1..803 | 17..819 | 4015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tll-RA | 1965 | CG1378-RA | 233..1035 | 17..819 | 4015 | 100 | Plus |
| dsf-RB | 3537 | CG9019-RB | 289..379 | 113..203 | 215 | 82.4 | Plus |
| dsf-RA | 3042 | CG9019-RA | 289..379 | 113..203 | 215 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30852744..30853470 | 93..819 | 3635 | 100 | Plus |
| 3R | 32079331 | 3R | 30852547..30852624 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 13:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 2896..3018 | 88..209 | 116 | 58.1 | Plus |
BO05022.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:29 Download gff for
BO05022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1378-PA | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:15 Download gff for
BO05022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1378-PA | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:44:02 Download gff for
BO05022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 226..1035 | 9..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:04:10 Download gff for
BO05022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 226..1035 | 9..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:04:10 Download gff for
BO05022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30852540..30852622 | 9..92 | 96 | -> | Plus |
| 3R | 30852744..30853470 | 93..819 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:44:02 Download gff for
BO05022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26678262..26678344 | 9..92 | 96 | -> | Plus |
| arm_3R | 26678466..26679192 | 93..819 | 100 | | Plus |
BO05022.complete Sequence
1390 bp (1390 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629944
> BO05022.complete
GAAGTTATCAGTCGACATGCAGTCGTCGGAGGGTTCACCAGACATGATGG
ATCAGAAATACAACAGCGTGCGTCTTTCGCCAGCGGCATCGAGTCGCATT
CTATACCATGTGCCCTGCAAAGTCTGCAGAGATCACAGCTCCGGCAAGCA
TTACGGCATCTACGCCTGTGATGGCTGCGCCGGATTCTTCAAGAGGAGCA
TTCGGAGATCCCGGCAGTATGTGTGCAAGTCGCAGAAGCAGGGACTCTGT
GTGGTGGACAAGACGCACAGGAACCAATGTAGGGCTTGCCGACTGAGGAA
GTGCTTTGAGGTCGGAATGAACAAGGATGCAGTGCAGCACGAGCGGGGAC
CGCGGAACTCCACTCTGCGTCGCCACATGGCCATGTACAAGGATGCCATG
ATGGGCGCCGGCGAGATGCCACAAATACCCGCCGAAATTCTGATGAACAC
GGCTGCCTTGACCGGCTTTCCTGGAGTACCGATGCCCATGCCTGGCCTGC
CCCAGAGGGCTGGTCATCATCCTGCTCACATGGCTGCCTTCCAGCCGCCA
CCATCGGCTGCCGCTGTCTTGGACTTATCCGTGCCACGAGTGCCCCATCA
CCCGGTGCACCAAGGACACCACGGTTTCTTCTCGCCCACCGCCGCCTACA
TGAATGCCCTGGCCACTCGGGCCCTGCCCCCCACTCCTCCGCTGATGGCA
GCTGAGCACATCAAGGAAACCGCGGCGGAACACCTATTCAAGAACGTCAA
CTGGATCAAGAGCGTACGGGCCTTCACCGAACTGCCCATGCCGGATCAGC
TGCTCCTGCTGGAGGAGTCCTGGAAGGAGTTCTTCATCCTGGCCATGGCC
CAGTACCTAATGCCCATGAATTTCGCCCAGCTGCTGTTCGTCTACGAGTC
CGAGAATGCCAACCGGGAGATCATGGGCATGGTGACCCGCGAGGTGCACG
CCTTCCAGGAGGTGCTGAACCAACTGTGCCATCTGAACATTGACAGCACC
GAGTACGAGTGTCTGAGGGCTATTTCGCTCTTCCGTAAGTCACCACCGTC
GGCAAGTTCTACCGAGGATTTAGCCAACAGCTCAATCCTGACAGGAAGCG
GCAGCCCGAACTCCTCGGCCTCTGCTGAATCCAGGGGTCTTCTGGAGTCG
GGAAAAGTGGCGGCCATGCACAACGATGCCCGGAGTGCGCTGCACAACTA
CATCCAGAGGACCCATCCCTCGCAGCCCATGCGATTCCAGACGCTCTTGG
GCGTGGTGCAGCTGATGCACAAGGTCTCAAGCTTCACCATCGAGGAGCTG
TTCTTCCGAAAGACCATCGGCGACATCACCATTGTGCGCCTCATCTCCGA
CATGTACAGTCAGCGCAAGATCGCAAGCTTTCTAGACCAT
BO05022.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tll-RA | 1359 | CG1378-PA | 1..1356 | 17..1372 | 6780 | 100 | Plus |
| dsf-RB | 2076 | CG9019-PB | 34..124 | 113..203 | 215 | 82.4 | Plus |
| dsf-RA | 2076 | CG9019-PA | 34..124 | 113..203 | 215 | 82.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tll-RA | 1965 | CG1378-RA | 233..1588 | 17..1372 | 6780 | 100 | Plus |
| dsf-RB | 3537 | CG9019-RB | 289..379 | 113..203 | 215 | 82.4 | Plus |
| dsf-RA | 3042 | CG9019-RA | 289..379 | 113..203 | 215 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30852744..30854023 | 93..1372 | 6400 | 100 | Plus |
| 3R | 32079331 | 3R | 30852547..30852624 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:26:13 has no hits.
BO05022.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:48 Download gff for
BO05022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 1..1359 | 17..1375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:57 Download gff for
BO05022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 226..1592 | 9..1376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:54 Download gff for
BO05022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 233..1588 | 17..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:48 Download gff for
BO05022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 226..1592 | 9..1376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:03 Download gff for
BO05022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 233..1588 | 17..1374 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:03 Download gff for
BO05022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30852547..30852622 | 17..92 | 100 | -> | Plus |
| 3R | 30852744..30854023 | 93..1374 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:54 Download gff for
BO05022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26678269..26678344 | 17..92 | 100 | -> | Plus |
| arm_3R | 26678466..26679745 | 93..1374 | 99 | | Plus |
BO05022.pep Sequence
Translation from 16 to 1390
> BO05022.pep
MQSSEGSPDMMDQKYNSVRLSPAASSRILYHVPCKVCRDHSSGKHYGIYA
CDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVG
MNKDAVQHERGPRNSTLRRHMAMYKDAMMGAGEMPQIPAEILMNTAALTG
FPGVPMPMPGLPQRAGHHPAHMAAFQPPPSAAAVLDLSVPRVPHHPVHQG
HHGFFSPTAAYMNALATRALPPTPPLMAAEHIKETAAEHLFKNVNWIKSV
RAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANR
EIMGMVTREVHAFQEVLNQLCHLNIDSTEYECLRAISLFRKSPPSASSTE
DLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNYIQRTH
PSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIGDITIVRLISDMYSQR
KIASFLDH
BO05022.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tll-PA | 452 | CG1378-PA | 1..452 | 1..452 | 2377 | 100 | Plus |
| dsf-PB | 691 | CG9019-PB | 8..98 | 29..117 | 361 | 71.4 | Plus |
| dsf-PA | 691 | CG9019-PA | 8..98 | 29..117 | 361 | 71.4 | Plus |
| Hr51-PC | 582 | CG16801-PC | 111..250 | 34..195 | 316 | 45.1 | Plus |
| dsf-PB | 691 | CG9019-PB | 491..683 | 226..448 | 270 | 30.2 | Plus |
| dsf-PA | 691 | CG9019-PA | 491..683 | 226..448 | 270 | 30.2 | Plus |
| Hr83-PA | 278 | CG10296-PA | 7..93 | 34..125 | 270 | 55.4 | Plus |
| Hr51-PC | 582 | CG16801-PC | 373..580 | 223..447 | 229 | 28.5 | Plus |
