Clone BO05023 Report

Search the DGRC for BO05023

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:23
Vector:pDNR-Dual
Associated Gene/Transcripte(y)2-RA
Protein status:BO05023.pep: validated full length
Sequenced Size:337

Clone Sequence Records

BO05023.5prime Sequence

335 bp (334 high quality bases) assembled on 2005-12-02

> BO05023.5prime
GAAGTTATCAGTCGACATGAGCACTTCCGGCGCAGTTGATCAGTACACGG
TGCTAACCGGCGACCGTTCCAAGATCAAGGATTTGCTCTGCAGCCGCCTT
ACGGAATGTGGCTGGCGGGACGAGGTGCGTCTGATGTGCCGCAACATCCT
GATGGAGAAGGGCACCAACAACAGCTTCACCGTAGAGCAGCTGATCGCCG
AGGTAACACCCAAGGCACGCACCCTGGTCCCGGATGCCGTCAAAAAGGAG
CTGCTTATGAAGATACGCACCATTCTCACGGAAATTGAGGAGGAACCCGA
TGAGCCAGAGGACGAATCCGCAAGCTTTCTAGACC

BO05023.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG15191-PA 306 e(y)2-RA 1..303 17..319 1515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)2-RA 503 CG15191-RA 143..445 17..319 1515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11576176..11576478 319..17 1515 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:15:06 has no hits.

BO05023.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:31 Download gff for BO05023.5prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-PA 1..306 17..323 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:18 Download gff for BO05023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15191-PA 1..306 17..323 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:00 Download gff for BO05023.5prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 140..452 10..328 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:18:19 Download gff for BO05023.5prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 140..452 10..328 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:18:19 Download gff for BO05023.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11576169..11576481 10..328 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:00 Download gff for BO05023.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11470202..11470514 10..328 97   Minus

BO05023.3prime Sequence

335 bp (334 high quality bases) assembled on 2005-12-02

> BO05023.3prime
ATGGTCTAGAAAGCTTGCGGATTCGTCCTCTGGCTCATCGGGTTCCTCCT
CAATTTCCGTGAGAATGGTGCGTATCTTCATAAGCAGCTCCTTTTTGACG
GCATCCGGGACCAGGGTGCGTGCCTTGGGTGTTACCTCGGCGATCAGCTG
CTCTACGGTGAAGCTGTTGTTGGTGCCCTTCTCCATCAGGATGTTGCGGC
ACATCAGACGCACCTCGTCCCGCCAGCCACATTCCGTAAGGCGGCTGCAG
AGCAAATCCTTGATCTTGGAACGGTCGCCGGTTAGCACCGTGTACTGATC
AACTGCGCCGGAAGTGCTCATGTCGACTGATAACT

BO05023.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15191-PA 306 e(y)2-RA 1..303 321..19 1515 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)2-RA 503 CG15191-RA 143..445 321..19 1515 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11576176..11576478 19..321 1515 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:43:05 has no hits.

BO05023.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:30 Download gff for BO05023.3prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-PA 1..306 15..321 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:16 Download gff for BO05023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15191-PA 1..306 15..321 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:25 Download gff for BO05023.3prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 140..452 10..328 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:06 Download gff for BO05023.3prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 140..452 10..328 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:06 Download gff for BO05023.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11576169..11576481 10..328 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:25 Download gff for BO05023.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11470202..11470514 10..328 97   Plus

BO05023.complete Sequence

337 bp (337 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629945

> BO05023.complete
GAAGTTATCAGTCGACATGAGCACTTCCGGCGCAGTTGATCAGTACACGG
TGCTAACCGGCGACCGTTCCAAGATCAAGGATTTGCTCTGCAGCCGCCTT
ACGGAATGTGGCTGGCGGGACGAGGTGCGTCTGATGTGCCGCAACATCCT
GATGGAGAAGGGCACCAACAACAGCTTCACCGTAGAGCAGCTGATCGCCG
AGGTAACACCCAAGGCACGCACCCTGGTCCCGGATGCCGTCAAAAAGGAG
CTGCTTATGAAGATACGCACCATTCTCACGGAAATTGAGGAGGAACCCGA
TGAGCCAGAGGACGAATCCGCAAGCTTTCTAGACCAT

BO05023.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)2-RA 306 CG15191-PA 1..303 17..319 1515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)2-RA 503 CG15191-RA 143..445 17..319 1515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11576176..11576478 319..17 1515 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:45:08 has no hits.

BO05023.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:28 Download gff for BO05023.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 1..306 17..323 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:24 Download gff for BO05023.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 115..427 10..328 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:52 Download gff for BO05023.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 143..445 17..321 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:28 Download gff for BO05023.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 115..427 10..328 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:53 Download gff for BO05023.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 143..445 17..321 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:53 Download gff for BO05023.complete
Subject Subject Range Query Range Percent Splice Strand
X 11576174..11576478 17..321 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:52 Download gff for BO05023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11470207..11470511 17..321 99   Minus

BO05023.pep Sequence

Translation from 16 to 337

> BO05023.pep
MSTSGAVDQYTVLTGDRSKIKDLLCSRLTECGWRDEVRLMCRNILMEKGT
NNSFTVEQLIAEVTPKARTLVPDAVKKELLMKIRTILTEIEEEPDEPEDE
SASFLDH

BO05023.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)2-PA 101 CG15191-PA 1..101 1..101 514 100 Plus
e(y)2b-PB 95 CG14612-PB 18..93 11..87 181 41.6 Plus
e(y)2b-PA 95 CG14612-PA 18..93 11..87 181 41.6 Plus