Clone Sequence Records
BO05026.3prime Sequence
951 bp (846 high quality bases) assembled on 2005-12-02
> BO05026.3prime
ATGGTCTAGAAAGCTTGCATCCTGGGAGTCGCCAGCATTGCTGGTGCGAT
CCAACCCTATGCCGCCCGCTCCGTTGGACTCGGATTGCTCGATATCCGCC
GCACTGAGCACTCCCGGAAGGTAGCCGGTTCCGGCGTAGGGAGCAGTCAG
GAATCGCTTGGCGTGCGCCTGCATGAAGGGATGGTAGCGATGGGTGGGGG
AGCCGAAAACCGAGGGCGGCACCAGCGGGGAGAAGGCGGACTTCATGGGA
AAGGGCGGCGATGGCGGCACCTGCGGCGGAGTCTGTCCCAAATCCTCGCC
AGCCAGCATGCACTCCATGGCCTGGAGCACGTCGCCACGGAACCGCTGCA
TCAGCTGCTCCACATCGCTGCGCCGTCGGTTGGGGAACACCCTCATCAGG
ACGTCGATGGGCGATCTCTGCTGCTGTTGCTGCTGCTGCTGCTGTTGCTG
GTGGTGCTGTGGCAGGTGGTTCTGCTGCTGCTGCTGCTGCTGTTGCTGCT
GCTGGTGGTGCGGCGAGTGTGCCGCTGGGTGGTGGTGGGCGGGCAGGCCG
GCGGCGGCCAGGAACTGCGTGTGGTGATATGGCAGGAAGCCCTGGGCATG
ACTGCTGCTGAAGGATCGCAGCAGATGAAGATTCTCGGCGGGCGTGTTGG
GCGGCGACTGGCTGTCCTCCTTCTTGAGACTGAGATTCTCCGGCGTGGCC
TCATCCGGCGCCGAATCCACGTCCAGATCCGATTCCGGCGAGCTGGGCGG
TCCAGTGCGGGCGGGCGACAAGCTGGCGGTCAGATTGAACAGTCCGGCGA
CCTTGGGCCGGGGACTACTCGGCGATCCGGACTCGGAGCCCGTGTCCTGG
TCGGTCTCGTTCGACAGGGCTGCTCGGCGCTTGGACACAGGACTCTCATC
CAGCTCCGGTTCTGGTGGGGCGAGAAACCGACGCTGAAGTGCTCGGAACG
G
BO05026.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15504-PA | 1533 | dmrt99B-RA | 643..1530 | 906..19 | 4415 | 99.8 | Minus |
CG15504-PA | 1533 | dmrt99B-RA | 600..633 | 951..918 | 145 | 97 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmrt99B-RA | 2350 | CG15504-RA | 816..1746 | 951..19 | 4585 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29695552..29696421 | 888..19 | 4335 | 99.9 | Minus |
3R | 32079331 | 3R | 29693776..29693837 | 951..888 | 205 | 95.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:33:57 has no hits.
BO05026.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:32 Download gff for
BO05026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15504-PA | 600..1533 | 16..951 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:19 Download gff for
BO05026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15504-PA | 600..1533 | 16..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:53 Download gff for
BO05026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 816..1752 | 13..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:23:22 Download gff for
BO05026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 816..1752 | 13..951 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:23:22 Download gff for
BO05026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29693776..29693837 | 888..951 | 95 | -> | Minus |
3R | 29695553..29696427 | 13..887 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:53 Download gff for
BO05026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25519498..25519559 | 888..951 | 95 | -> | Minus |
arm_3R | 25521275..25522149 | 13..887 | 99 | | Minus |
BO05026.5prime Sequence
908 bp (852 high quality bases) assembled on 2005-12-02
> BO05026.5prime
GAAGTTATCAGTCGACATGAGTCTACCGTCGGGTGTGGACATGCAGAATC
TGATGTCCCAGCATCCGGTCTTGGGAGCACTGCCACCTGCTTTCTTCTTG
CGAGCCGCCTCGGAACGCTACCAAAGGACGCCCAAGTGCGCCCGCTGCAG
GAACCACGGAGTGGTCAGCGCCTTGAAGGGACACAAACGCTACTGCCGCT
GGCGGGATTGCGTCTGCGCCAAATGCACTCTAATCGCGGAACGCCAAAGG
GTTATGGCTGCTCAGGTGGCCCTTCGACGCCAACAGGCCCAAGAAGAGAA
CGAGGCCCGCGAGCTGGGCCTGCTCTACACTTCGGTTCCTGGCCAGCAGA
ATGGCAGCGACAGTGCTACGCCCACTCCGCACAGCCCCAACCACAGCGGC
AGCGGCGGCTCGGGCAGCGGAGGATCGGGCCAGAACGGCGTCTTCCACGG
CGGGATTCCCTCGCCACCCAGCGACGGCTTCGAGGCCAGCTCCACTCCCA
ATCATCACCAGCAGTCGCAGCAGCAGCAGCAGGCGCACCACCAACAGCAC
CTTAGCCACCCACACCAGCAGTCCCAGCGGTTCAATGGCAATGAATCCGA
CACGGATGGACGCACCCGTTCCGAGCACCTCAGCGTCGGTTTCTCGCCCA
CCAGAACCGAGCTGGATGAGAGTCCTGTGTCCAAGCGCGGAGCAGCCCTG
TCGAACGAGACCGACCAGGACACGGGCTCCGAGTCCGGATCGCCGAGTAG
TCCCCGGCCCAAGGTCGCCGGACTGTTCAATCTGACCGCCAGCTTGTCGC
CCGCCCGCACTGGACCGCCCAGCTCGCCGGAATCGGATCTGGACGTGGAT
TCGGCGCCGGATGAGGCCACGCCGGAGAATCTCAGTCTCAAGAAAGAGGA
CAGCCAGT
BO05026.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15504-PA | 1533 | dmrt99B-RA | 1..892 | 17..908 | 4435 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:15:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmrt99B-RA | 2350 | CG15504-RA | 211..1108 | 11..908 | 4460 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29693423..29693837 | 263..677 | 2075 | 100 | Plus |
3R | 32079331 | 3R | 29695552..29695783 | 677..908 | 1145 | 99.6 | Plus |
3R | 32079331 | 3R | 29692801..29692955 | 11..165 | 760 | 99.4 | Plus |
3R | 32079331 | 3R | 29693037..29693143 | 163..269 | 535 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 01:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5815..5869 | 230..176 | 122 | 69.1 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 7270..7324 | 230..176 | 122 | 69.1 | Minus |
BO05026.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:33 Download gff for
BO05026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15504-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:21 Download gff for
BO05026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15504-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:02 Download gff for
BO05026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 207..1108 | 8..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:18:41 Download gff for
BO05026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 207..1108 | 8..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:18:41 Download gff for
BO05026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29692797..29692953 | 8..163 | 98 | -> | Plus |
3R | 29693038..29693139 | 164..265 | 100 | -> | Plus |
3R | 29693426..29693837 | 266..677 | 100 | -> | Plus |
3R | 29695553..29695783 | 678..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:02 Download gff for
BO05026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25518519..25518675 | 8..163 | 98 | -> | Plus |
arm_3R | 25518760..25518861 | 164..265 | 100 | -> | Plus |
arm_3R | 25519148..25519559 | 266..677 | 100 | -> | Plus |
arm_3R | 25521275..25521505 | 678..908 | 99 | | Plus |
BO05026.complete Sequence
1564 bp (1564 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629946
> BO05026.complete
GAAGTTATCAGTCGACATGAGTCTACCGTCGGGTGTGGACATGCAGAATC
TGATGTCCCAGCATCCGGTCTTGGGAGCACTGCCACCTGCTTTCTTCTTG
CGAGCCGCCTCGGAACGCTACCAAAGGACGCCCAAGTGCGCCCGCTGCAG
GAACCACGGAGTGGTCAGCGCCTTGAAGGGACACAAACGCTACTGCCGCT
GGCGGGATTGCGTCTGCGCCAAATGCACTCTAATCGCGGAACGCCAAAGG
GTTATGGCTGCTCAGGTGGCCCTTCGACGCCAACAGGCCCAAGAAGAGAA
CGAGGCCCGCGAGCTGGGCCTGCTCTACACTTCGGTTCCTGGCCAGCAGA
ATGGCAGCGACAGTGCTACGCCCACTCCGCACAGCCCCAACCACAGCGGC
AGCGGCGGCTCGGGCAGCGGAGGATCGGGCCAGAACGGCGTCTTCCACGG
CGGGATTCCCTCGCCACCCAGCGACGGCTTCGAGGCCAGCTCCACTCCCA
ATCATCACCAGCAGTCGCAGCAGCAGCAGCAGGCGCACCACCAACAGCAC
CTTAGCCACCCACACCAGCAGTCCCAGCGGTTCAATGGCAATGAATCCGA
CACGGATGGACGCACCCGTTCCGAGCACCTCAGCGTCGGTTTCTCGCCCA
CCAGAACCGAGCTGGATGAGAGTCCTGTGTCCAAGCGCGGAGCAGCCCTG
TCGAACGAGACCGACCAGGACACGGGCTCCGAGTCCGGATCGCCGAGTAG
TCCCCGGCCCAAGGTCGCCGGACTGTTCAATCTGACCGCCAGCTTGTCGC
CCGCCCGCACTGGACCGCCCAGCTCGCCGGAATCGGATCTGGACGTGGAT
TCGGCGCCGGATGAGGCCACGCCGGAGAATCTCAGTCTCAAGAAGGAGGA
CAGCCAGTCGCCGCCCAACACGCCCGCCGAGAATCTTCATCTGCTGCGAT
CCTTCAGCAGCAGTCATGCCCAGGGCTTCCTGCCATATCACCACACGCAG
TTCCTGGCCGCCGCCGGCCTGCCCGCCCACCACCACCCAGCGGCACACTC
GCCGCACCACCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGAACCACC
TGCCACAGCACCACCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAGAGA
TCGCCCATCGACGTCCTGATGAGGGTGTTCCCCAACCGACGGCGCAGCGA
TGTGGAGCAGCTGATGCAGCGGTTCCGTGGCGACGTGCTCCAGGCCATGG
AGTGCATGCTGGCTGGCGAGGATTTGGGACAGACTCCGCCGCAGGTGCCG
CCATCGCCGCCCTTTCCCATGAAGTCCGCCTTCTCCCCGCTGGTGCCGCC
CTCGGTTTTCGGCTCCCCCACCCATCGCTACCATCCCTTCATGCAGGCGC
ACGCCAAGCGATTCCTGACTGCTCCCTACGCCGGAACCGGCTACCTTCCG
GGAGTGCTCAGTGCGGCGGATATCGAGCAATCCGAGTCCAACGGAGCGGG
CGGCATAGGGTTGGATCGCACCAGCAATGCTGGCGACTCCCAGGATGCAA
GCTTTCTAGACCAT
BO05026.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:50:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmrt99B-RA | 1533 | CG15504-PA | 1..1530 | 17..1546 | 7650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmrt99B-RA | 2350 | CG15504-RA | 211..1746 | 11..1546 | 7665 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29695552..29696421 | 677..1546 | 4350 | 100 | Plus |
3R | 32079331 | 3R | 29693423..29693837 | 263..677 | 2075 | 100 | Plus |
3R | 32079331 | 3R | 29692801..29692955 | 11..165 | 760 | 99.4 | Plus |
3R | 32079331 | 3R | 29693037..29693143 | 163..269 | 535 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5815..5869 | 230..176 | 122 | 69.1 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 7270..7324 | 230..176 | 122 | 69.1 | Minus |
BO05026.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:50 Download gff for
BO05026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 1..1533 | 17..1549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:59 Download gff for
BO05026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 1..1533 | 17..1549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:01 Download gff for
BO05026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 217..1746 | 17..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:50 Download gff for
BO05026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 1..1533 | 17..1549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:23 Download gff for
BO05026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 217..1746 | 17..1548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:23 Download gff for
BO05026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29692807..29692953 | 17..163 | 100 | -> | Plus |
3R | 29693038..29693139 | 164..265 | 100 | -> | Plus |
3R | 29693426..29693837 | 266..677 | 100 | -> | Plus |
3R | 29695553..29696421 | 678..1548 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:01 Download gff for
BO05026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25518529..25518675 | 17..163 | 100 | -> | Plus |
arm_3R | 25518760..25518861 | 164..265 | 100 | -> | Plus |
arm_3R | 25519148..25519559 | 266..677 | 100 | -> | Plus |
arm_3R | 25521275..25522143 | 678..1548 | 99 | | Plus |
BO05026.pep Sequence
Translation from 16 to 1564
> BO05026.pep
MSLPSGVDMQNLMSQHPVLGALPPAFFLRAASERYQRTPKCARCRNHGVV
SALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL
GLLYTSVPGQQNGSDSATPTPHSPNHSGSGGSGSGGSGQNGVFHGGIPSP
PSDGFEASSTPNHHQQSQQQQQAHHQQHLSHPHQQSQRFNGNESDTDGRT
RSEHLSVGFSPTRTELDESPVSKRGAALSNETDQDTGSESGSPSSPRPKV
AGLFNLTASLSPARTGPPSSPESDLDVDSAPDEATPENLSLKKEDSQSPP
NTPAENLHLLRSFSSSHAQGFLPYHHTQFLAAAGLPAHHHPAAHSPHHQQ
QQQQQQQQQNHLPQHHQQQQQQQQQQQRSPIDVLMRVFPNRRRSDVEQLM
QRFRGDVLQAMECMLAGEDLGQTPPQVPPSPPFPMKSAFSPLVPPSVFGS
PTHRYHPFMQAHAKRFLTAPYAGTGYLPGVLSAADIEQSESNGAGGIGLD
RTSNAGDSQDASFLDH
BO05026.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmrt99B-PA | 510 | CG15504-PA | 1..510 | 1..510 | 2718 | 100 | Plus |
dmrt11E-PA | 377 | CG15749-PA | 115..233 | 34..137 | 275 | 50.4 | Plus |
dsx-PF | 427 | CG11094-PF | 42..324 | 39..286 | 262 | 29.1 | Plus |
dsx-PC | 427 | CG11094-PC | 42..324 | 39..286 | 262 | 29.1 | Plus |
dsx-PB | 427 | CG11094-PB | 42..324 | 39..286 | 262 | 29.1 | Plus |