Clone BO05026 Report

Search the DGRC for BO05026

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:26
Vector:pDNR-Dual
Associated Gene/Transcriptdmrt99B-RA
Protein status:BO05026.pep: validated full length
Sequenced Size:1564

Clone Sequence Records

BO05026.3prime Sequence

951 bp (846 high quality bases) assembled on 2005-12-02

> BO05026.3prime
ATGGTCTAGAAAGCTTGCATCCTGGGAGTCGCCAGCATTGCTGGTGCGAT
CCAACCCTATGCCGCCCGCTCCGTTGGACTCGGATTGCTCGATATCCGCC
GCACTGAGCACTCCCGGAAGGTAGCCGGTTCCGGCGTAGGGAGCAGTCAG
GAATCGCTTGGCGTGCGCCTGCATGAAGGGATGGTAGCGATGGGTGGGGG
AGCCGAAAACCGAGGGCGGCACCAGCGGGGAGAAGGCGGACTTCATGGGA
AAGGGCGGCGATGGCGGCACCTGCGGCGGAGTCTGTCCCAAATCCTCGCC
AGCCAGCATGCACTCCATGGCCTGGAGCACGTCGCCACGGAACCGCTGCA
TCAGCTGCTCCACATCGCTGCGCCGTCGGTTGGGGAACACCCTCATCAGG
ACGTCGATGGGCGATCTCTGCTGCTGTTGCTGCTGCTGCTGCTGTTGCTG
GTGGTGCTGTGGCAGGTGGTTCTGCTGCTGCTGCTGCTGCTGTTGCTGCT
GCTGGTGGTGCGGCGAGTGTGCCGCTGGGTGGTGGTGGGCGGGCAGGCCG
GCGGCGGCCAGGAACTGCGTGTGGTGATATGGCAGGAAGCCCTGGGCATG
ACTGCTGCTGAAGGATCGCAGCAGATGAAGATTCTCGGCGGGCGTGTTGG
GCGGCGACTGGCTGTCCTCCTTCTTGAGACTGAGATTCTCCGGCGTGGCC
TCATCCGGCGCCGAATCCACGTCCAGATCCGATTCCGGCGAGCTGGGCGG
TCCAGTGCGGGCGGGCGACAAGCTGGCGGTCAGATTGAACAGTCCGGCGA
CCTTGGGCCGGGGACTACTCGGCGATCCGGACTCGGAGCCCGTGTCCTGG
TCGGTCTCGTTCGACAGGGCTGCTCGGCGCTTGGACACAGGACTCTCATC
CAGCTCCGGTTCTGGTGGGGCGAGAAACCGACGCTGAAGTGCTCGGAACG
G

BO05026.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15504-PA 1533 dmrt99B-RA 643..1530 906..19 4415 99.8 Minus
CG15504-PA 1533 dmrt99B-RA 600..633 951..918 145 97 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
dmrt99B-RA 2350 CG15504-RA 816..1746 951..19 4585 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29695552..29696421 888..19 4335 99.9 Minus
3R 32079331 3R 29693776..29693837 951..888 205 95.3 Minus
Blast to na_te.dros performed on 2015-02-11 02:33:57 has no hits.

BO05026.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:32 Download gff for BO05026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15504-PA 600..1533 16..951 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:19 Download gff for BO05026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15504-PA 600..1533 16..951 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:53 Download gff for BO05026.3prime
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 816..1752 13..951 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:23:22 Download gff for BO05026.3prime
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 816..1752 13..951 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:23:22 Download gff for BO05026.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29693776..29693837 888..951 95 -> Minus
3R 29695553..29696427 13..887 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:53 Download gff for BO05026.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25519498..25519559 888..951 95 -> Minus
arm_3R 25521275..25522149 13..887 99   Minus

BO05026.5prime Sequence

908 bp (852 high quality bases) assembled on 2005-12-02

> BO05026.5prime
GAAGTTATCAGTCGACATGAGTCTACCGTCGGGTGTGGACATGCAGAATC
TGATGTCCCAGCATCCGGTCTTGGGAGCACTGCCACCTGCTTTCTTCTTG
CGAGCCGCCTCGGAACGCTACCAAAGGACGCCCAAGTGCGCCCGCTGCAG
GAACCACGGAGTGGTCAGCGCCTTGAAGGGACACAAACGCTACTGCCGCT
GGCGGGATTGCGTCTGCGCCAAATGCACTCTAATCGCGGAACGCCAAAGG
GTTATGGCTGCTCAGGTGGCCCTTCGACGCCAACAGGCCCAAGAAGAGAA
CGAGGCCCGCGAGCTGGGCCTGCTCTACACTTCGGTTCCTGGCCAGCAGA
ATGGCAGCGACAGTGCTACGCCCACTCCGCACAGCCCCAACCACAGCGGC
AGCGGCGGCTCGGGCAGCGGAGGATCGGGCCAGAACGGCGTCTTCCACGG
CGGGATTCCCTCGCCACCCAGCGACGGCTTCGAGGCCAGCTCCACTCCCA
ATCATCACCAGCAGTCGCAGCAGCAGCAGCAGGCGCACCACCAACAGCAC
CTTAGCCACCCACACCAGCAGTCCCAGCGGTTCAATGGCAATGAATCCGA
CACGGATGGACGCACCCGTTCCGAGCACCTCAGCGTCGGTTTCTCGCCCA
CCAGAACCGAGCTGGATGAGAGTCCTGTGTCCAAGCGCGGAGCAGCCCTG
TCGAACGAGACCGACCAGGACACGGGCTCCGAGTCCGGATCGCCGAGTAG
TCCCCGGCCCAAGGTCGCCGGACTGTTCAATCTGACCGCCAGCTTGTCGC
CCGCCCGCACTGGACCGCCCAGCTCGCCGGAATCGGATCTGGACGTGGAT
TCGGCGCCGGATGAGGCCACGCCGGAGAATCTCAGTCTCAAGAAAGAGGA
CAGCCAGT

BO05026.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15504-PA 1533 dmrt99B-RA 1..892 17..908 4435 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
dmrt99B-RA 2350 CG15504-RA 211..1108 11..908 4460 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29693423..29693837 263..677 2075 100 Plus
3R 32079331 3R 29695552..29695783 677..908 1145 99.6 Plus
3R 32079331 3R 29692801..29692955 11..165 760 99.4 Plus
3R 32079331 3R 29693037..29693143 163..269 535 100 Plus
Blast to na_te.dros performed 2015-02-12 01:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5815..5869 230..176 122 69.1 Minus
TART-C 11124 TART-C TARTC 11124bp 7270..7324 230..176 122 69.1 Minus

BO05026.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:33 Download gff for BO05026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15504-PA 1..892 17..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:21 Download gff for BO05026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15504-PA 1..892 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:02 Download gff for BO05026.5prime
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 207..1108 8..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:18:41 Download gff for BO05026.5prime
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 207..1108 8..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:18:41 Download gff for BO05026.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29692797..29692953 8..163 98 -> Plus
3R 29693038..29693139 164..265 100 -> Plus
3R 29693426..29693837 266..677 100 -> Plus
3R 29695553..29695783 678..908 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:02 Download gff for BO05026.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25518519..25518675 8..163 98 -> Plus
arm_3R 25518760..25518861 164..265 100 -> Plus
arm_3R 25519148..25519559 266..677 100 -> Plus
arm_3R 25521275..25521505 678..908 99   Plus

BO05026.complete Sequence

1564 bp (1564 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629946

> BO05026.complete
GAAGTTATCAGTCGACATGAGTCTACCGTCGGGTGTGGACATGCAGAATC
TGATGTCCCAGCATCCGGTCTTGGGAGCACTGCCACCTGCTTTCTTCTTG
CGAGCCGCCTCGGAACGCTACCAAAGGACGCCCAAGTGCGCCCGCTGCAG
GAACCACGGAGTGGTCAGCGCCTTGAAGGGACACAAACGCTACTGCCGCT
GGCGGGATTGCGTCTGCGCCAAATGCACTCTAATCGCGGAACGCCAAAGG
GTTATGGCTGCTCAGGTGGCCCTTCGACGCCAACAGGCCCAAGAAGAGAA
CGAGGCCCGCGAGCTGGGCCTGCTCTACACTTCGGTTCCTGGCCAGCAGA
ATGGCAGCGACAGTGCTACGCCCACTCCGCACAGCCCCAACCACAGCGGC
AGCGGCGGCTCGGGCAGCGGAGGATCGGGCCAGAACGGCGTCTTCCACGG
CGGGATTCCCTCGCCACCCAGCGACGGCTTCGAGGCCAGCTCCACTCCCA
ATCATCACCAGCAGTCGCAGCAGCAGCAGCAGGCGCACCACCAACAGCAC
CTTAGCCACCCACACCAGCAGTCCCAGCGGTTCAATGGCAATGAATCCGA
CACGGATGGACGCACCCGTTCCGAGCACCTCAGCGTCGGTTTCTCGCCCA
CCAGAACCGAGCTGGATGAGAGTCCTGTGTCCAAGCGCGGAGCAGCCCTG
TCGAACGAGACCGACCAGGACACGGGCTCCGAGTCCGGATCGCCGAGTAG
TCCCCGGCCCAAGGTCGCCGGACTGTTCAATCTGACCGCCAGCTTGTCGC
CCGCCCGCACTGGACCGCCCAGCTCGCCGGAATCGGATCTGGACGTGGAT
TCGGCGCCGGATGAGGCCACGCCGGAGAATCTCAGTCTCAAGAAGGAGGA
CAGCCAGTCGCCGCCCAACACGCCCGCCGAGAATCTTCATCTGCTGCGAT
CCTTCAGCAGCAGTCATGCCCAGGGCTTCCTGCCATATCACCACACGCAG
TTCCTGGCCGCCGCCGGCCTGCCCGCCCACCACCACCCAGCGGCACACTC
GCCGCACCACCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGAACCACC
TGCCACAGCACCACCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAGAGA
TCGCCCATCGACGTCCTGATGAGGGTGTTCCCCAACCGACGGCGCAGCGA
TGTGGAGCAGCTGATGCAGCGGTTCCGTGGCGACGTGCTCCAGGCCATGG
AGTGCATGCTGGCTGGCGAGGATTTGGGACAGACTCCGCCGCAGGTGCCG
CCATCGCCGCCCTTTCCCATGAAGTCCGCCTTCTCCCCGCTGGTGCCGCC
CTCGGTTTTCGGCTCCCCCACCCATCGCTACCATCCCTTCATGCAGGCGC
ACGCCAAGCGATTCCTGACTGCTCCCTACGCCGGAACCGGCTACCTTCCG
GGAGTGCTCAGTGCGGCGGATATCGAGCAATCCGAGTCCAACGGAGCGGG
CGGCATAGGGTTGGATCGCACCAGCAATGCTGGCGACTCCCAGGATGCAA
GCTTTCTAGACCAT

BO05026.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
dmrt99B-RA 1533 CG15504-PA 1..1530 17..1546 7650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
dmrt99B-RA 2350 CG15504-RA 211..1746 11..1546 7665 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29695552..29696421 677..1546 4350 100 Plus
3R 32079331 3R 29693423..29693837 263..677 2075 100 Plus
3R 32079331 3R 29692801..29692955 11..165 760 99.4 Plus
3R 32079331 3R 29693037..29693143 163..269 535 100 Plus
Blast to na_te.dros performed 2014-11-26 14:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5815..5869 230..176 122 69.1 Minus
TART-C 11124 TART-C TARTC 11124bp 7270..7324 230..176 122 69.1 Minus

BO05026.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:50 Download gff for BO05026.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 1..1533 17..1549 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:59 Download gff for BO05026.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 1..1533 17..1549 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:01 Download gff for BO05026.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 217..1746 17..1548 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:50 Download gff for BO05026.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 1..1533 17..1549 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:23 Download gff for BO05026.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 217..1746 17..1548 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:23 Download gff for BO05026.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29692807..29692953 17..163 100 -> Plus
3R 29693038..29693139 164..265 100 -> Plus
3R 29693426..29693837 266..677 100 -> Plus
3R 29695553..29696421 678..1548 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:01 Download gff for BO05026.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25518529..25518675 17..163 100 -> Plus
arm_3R 25518760..25518861 164..265 100 -> Plus
arm_3R 25519148..25519559 266..677 100 -> Plus
arm_3R 25521275..25522143 678..1548 99   Plus

BO05026.pep Sequence

Translation from 16 to 1564

> BO05026.pep
MSLPSGVDMQNLMSQHPVLGALPPAFFLRAASERYQRTPKCARCRNHGVV
SALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL
GLLYTSVPGQQNGSDSATPTPHSPNHSGSGGSGSGGSGQNGVFHGGIPSP
PSDGFEASSTPNHHQQSQQQQQAHHQQHLSHPHQQSQRFNGNESDTDGRT
RSEHLSVGFSPTRTELDESPVSKRGAALSNETDQDTGSESGSPSSPRPKV
AGLFNLTASLSPARTGPPSSPESDLDVDSAPDEATPENLSLKKEDSQSPP
NTPAENLHLLRSFSSSHAQGFLPYHHTQFLAAAGLPAHHHPAAHSPHHQQ
QQQQQQQQQNHLPQHHQQQQQQQQQQQRSPIDVLMRVFPNRRRSDVEQLM
QRFRGDVLQAMECMLAGEDLGQTPPQVPPSPPFPMKSAFSPLVPPSVFGS
PTHRYHPFMQAHAKRFLTAPYAGTGYLPGVLSAADIEQSESNGAGGIGLD
RTSNAGDSQDASFLDH

BO05026.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
dmrt99B-PA 510 CG15504-PA 1..510 1..510 2718 100 Plus
dmrt11E-PA 377 CG15749-PA 115..233 34..137 275 50.4 Plus
dsx-PF 427 CG11094-PF 42..324 39..286 262 29.1 Plus
dsx-PC 427 CG11094-PC 42..324 39..286 262 29.1 Plus
dsx-PB 427 CG11094-PB 42..324 39..286 262 29.1 Plus