Clone Sequence Records
BO05027.3prime Sequence
827 bp (798 high quality bases) assembled on 2005-12-02
> BO05027.3prime
ATGGTCTAGAAAGCTTGCATTATTAAAACTTTGCACAACTTCTGTAAATG
TTACCTCGCTGACCTCGGTGATTTCAATCTCACGCTTTCTTTTGCATTTA
TCCGGCATCTGGCAAGTTTTCAGATGACGGTGAAGGAAACCCTCATATTT
GTACTTTTTCCCACAACGATCACAGATTAATTCGGGCCTTCTCTTCCCTA
AGATCTTTTTCTCCTCCTCCTGGGCCTTCAGCCTTACGATACATGCGTCG
CACGCGTATCGACGGGTCACTTGGCCAGGCTTAAAGCAGGCCTTGAACTC
CGTGCGACAAAAGACGCAATTGAAGGTCTTGGTGATGGTGTACGCCCCTT
CGTAGGATTCATCCGTGGACTCGCACGGTATCAGATGGCTCTCCAAATGG
GTGCGATACTCCAGATCCGTCCCGAACTTGACATGGCAGGATGCACAGGT
GCGATTCATTGATGGGCTTCCATGCAGGAGCCTGTGGCCGATCAGGGCAT
CCACCGAGGAGAAGATTTTCTTGCAAATGTTGCACTGATGCTGGGACACG
TCCGGCACATCCTTCATCATGCGTGCCAAGCGTCTTTGGCAGGCCATCAG
ATGGACCTTGTAGGCACCGGCCGTGCGAATCACATTAGAGCAAAGCGGAC
AGTGGAAGCGTTGCGTGTTGTCCTCCAGGAAAACTTTCTCCTCTTTTATC
GGCTGCAAACAGGGCGCCACGTACACCTTGGTAACAATACCATTATCCTC
CTGAATCGACAGTAGAGTAGCTGGTTCCAGCTCCTCGGAAATCCAGTTGC
CAGCACTTGTCATGTCGACTGATAACT
BO05027.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15710-PA | 798 | CG15710-RA | 1..795 | 813..19 | 3975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15710-RA | 914 | CG15710-RA | 62..856 | 813..19 | 3975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16347672..16348466 | 19..813 | 3975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:27:05 has no hits.
BO05027.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:34 Download gff for
BO05027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15710-PA | 1..798 | 16..813 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:21 Download gff for
BO05027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15710-PA | 1..798 | 16..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:21 Download gff for
BO05027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15710-RA | 56..856 | 19..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:48:29 Download gff for
BO05027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15710-RA | 56..856 | 19..820 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:48:29 Download gff for
BO05027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16347672..16348472 | 19..820 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:21 Download gff for
BO05027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12235177..12235977 | 19..820 | 99 | | Plus |
BO05027.5prime Sequence
827 bp (785 high quality bases) assembled on 2005-12-02
> BO05027.5prime
GAAGTTATCAGTCGACATGACAAGTGCTGGCAACTGGATTTCCGAGGAGC
TGGAACCAGCTACTCTACTGTCGATTCAGGAGGATAATGGTATTGTTACC
AAGGTGTACGTGGCGCCCTGTTTGCAGCCGATAAAAGAGGAGAAAGTTTT
CCTGGAGGACAACACGCAACGCTTCCACTGTCCGCTTTGCTCTAATGTGA
TTCGCACGGCCGGTGCCTACAAGGTCCATCTGATGGCCTGCCAAAGACGC
TTGGCACGCATGATGAAGGATGTGCCGGACGTGTCCCAGCATCAGTGCAA
CATTTGCAAGAAAATCTTCTCCTCGGTGGATGCCCTGATCGGCCACAGGC
TCCTGCATGGAAGCCCATCAATGAATCGCACCTGTGCATCCTGCCATGTC
AAGTTCGGGACGGATCTGGAGTATCGCACCCATTTGGAGAGCCATCTGAT
ACCGTGCGAGTCCACGGATGAATCCTACGAAGGGGCGTACACCATCACCA
AGACCTTCAATTGCGTCTTTTGTCGCACGGAGTTCAAGGCCTGCTTTAAG
CCTGGCCAAGTGACCCGTCGATACGCGTGCGACGCATGTATCGTAAGGCT
GAAGGCCCAGGAGGAGGAGAAAAAGATCTTAGGGAAGAGAAGGCCCGAAT
TAATCTGTGATCGTTGTGGGAAAAAGTACAAATATGAGGGTTTCCTTCAC
CGTCATCTGAAAACTTGCCAGATGCCGGATAAATGCAAAAGAAAGCGTGA
GATTGAAATCACCGAGGTCAGCGAGGTAACATTTACAGAAGTTGTGCAAA
GTTTTAATAATGCAAGCTTTCTAGACC
BO05027.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15710-PA | 798 | CG15710-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:52:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15710-RA | 914 | CG15710-RA | 62..856 | 17..811 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16347672..16348466 | 811..17 | 3975 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:52:37 has no hits.
BO05027.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:35 Download gff for
BO05027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15710-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:22 Download gff for
BO05027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15710-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:44:27 Download gff for
BO05027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15710-RA | 56..856 | 10..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:28 Download gff for
BO05027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15710-RA | 56..856 | 10..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:28 Download gff for
BO05027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16347672..16348472 | 10..811 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:44:27 Download gff for
BO05027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12235177..12235977 | 10..811 | 99 | | Minus |
BO05027.complete Sequence
829 bp (829 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629947
> BO05027.complete
GAAGTTATCAGTCGACATGACAAGTGCTGGCAACTGGATTTCCGAGGAGC
TGGAACCAGCTACTCTACTGTCGATTCAGGAGGATAATGGTATTGTTACC
AAGGTGTACGTGGCGCCCTGTTTGCAGCCGATAAAAGAGGAGAAAGTTTT
CCTGGAGGACAACACGCAACGCTTCCACTGTCCGCTTTGCTCTAATGTGA
TTCGCACGGCCGGTGCCTACAAGGTCCATCTGATGGCCTGCCAAAGACGC
TTGGCACGCATGATGAAGGATGTGCCGGACGTGTCCCAGCATCAGTGCAA
CATTTGCAAGAAAATCTTCTCCTCGGTGGATGCCCTGATCGGCCACAGGC
TCCTGCATGGAAGCCCATCAATGAATCGCACCTGTGCATCCTGCCATGTC
AAGTTCGGGACGGATCTGGAGTATCGCACCCATTTGGAGAGCCATCTGAT
ACCGTGCGAGTCCACGGATGAATCCTACGAAGGGGCGTACACCATCACCA
AGACCTTCAATTGCGTCTTTTGTCGCACGGAGTTCAAGGCCTGCTTTAAG
CCTGGCCAAGTGACCCGTCGATACGCGTGCGACGCATGTATCGTAAGGCT
GAAGGCCCAGGAGGAGGAGAAAAAGATCTTAGGGAAGAGAAGGCCCGAAT
TAATCTGTGATCGTTGTGGGAAAAAGTACAAATATGAGGGTTTCCTTCAC
CGTCATCTGAAAACTTGCCAGATGCCGGATAAATGCAAAAGAAAGCGTGA
GATTGAAATCACCGAGGTCAGCGAGGTAACATTTACAGAAGTTGTGCAAA
GTTTTAATAATGCAAGCTTTCTAGACCAT
BO05027.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15710-RA | 798 | CG15710-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15710-RA | 914 | CG15710-RA | 62..856 | 17..811 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16347672..16348466 | 811..17 | 3975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:32:56 has no hits.
BO05027.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:51 Download gff for
BO05027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15710-RA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:05:01 Download gff for
BO05027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15710-RA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:35 Download gff for
BO05027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15710-RA | 62..856 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:51 Download gff for
BO05027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15710-RA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:49 Download gff for
BO05027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15710-RA | 62..856 | 17..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:49 Download gff for
BO05027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16347669..16348466 | 17..813 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:35 Download gff for
BO05027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12235174..12235971 | 17..813 | 99 | | Minus |
BO05027.pep Sequence
Translation from 16 to 829
> BO05027.pep
MTSAGNWISEELEPATLLSIQEDNGIVTKVYVAPCLQPIKEEKVFLEDNT
QRFHCPLCSNVIRTAGAYKVHLMACQRRLARMMKDVPDVSQHQCNICKKI
FSSVDALIGHRLLHGSPSMNRTCASCHVKFGTDLEYRTHLESHLIPCEST
DESYEGAYTITKTFNCVFCRTEFKACFKPGQVTRRYACDACIVRLKAQEE
EKKILGKRRPELICDRCGKKYKYEGFLHRHLKTCQMPDKCKRKREIEITE
VSEVTFTEVVQSFNNASFLDH
BO05027.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15710-PA | 265 | CG15710-PA | 1..265 | 1..265 | 1430 | 100 | Plus |
CG3847-PA | 380 | CG3847-PA | 186..380 | 53..247 | 321 | 35.3 | Plus |