Clone BO05027 Report

Search the DGRC for BO05027

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG15710-RA
Protein status:BO05027.pep: validated full length
Sequenced Size:829

Clone Sequence Records

BO05027.3prime Sequence

827 bp (798 high quality bases) assembled on 2005-12-02

> BO05027.3prime
ATGGTCTAGAAAGCTTGCATTATTAAAACTTTGCACAACTTCTGTAAATG
TTACCTCGCTGACCTCGGTGATTTCAATCTCACGCTTTCTTTTGCATTTA
TCCGGCATCTGGCAAGTTTTCAGATGACGGTGAAGGAAACCCTCATATTT
GTACTTTTTCCCACAACGATCACAGATTAATTCGGGCCTTCTCTTCCCTA
AGATCTTTTTCTCCTCCTCCTGGGCCTTCAGCCTTACGATACATGCGTCG
CACGCGTATCGACGGGTCACTTGGCCAGGCTTAAAGCAGGCCTTGAACTC
CGTGCGACAAAAGACGCAATTGAAGGTCTTGGTGATGGTGTACGCCCCTT
CGTAGGATTCATCCGTGGACTCGCACGGTATCAGATGGCTCTCCAAATGG
GTGCGATACTCCAGATCCGTCCCGAACTTGACATGGCAGGATGCACAGGT
GCGATTCATTGATGGGCTTCCATGCAGGAGCCTGTGGCCGATCAGGGCAT
CCACCGAGGAGAAGATTTTCTTGCAAATGTTGCACTGATGCTGGGACACG
TCCGGCACATCCTTCATCATGCGTGCCAAGCGTCTTTGGCAGGCCATCAG
ATGGACCTTGTAGGCACCGGCCGTGCGAATCACATTAGAGCAAAGCGGAC
AGTGGAAGCGTTGCGTGTTGTCCTCCAGGAAAACTTTCTCCTCTTTTATC
GGCTGCAAACAGGGCGCCACGTACACCTTGGTAACAATACCATTATCCTC
CTGAATCGACAGTAGAGTAGCTGGTTCCAGCTCCTCGGAAATCCAGTTGC
CAGCACTTGTCATGTCGACTGATAACT

BO05027.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15710-PA 798 CG15710-RA 1..795 813..19 3975 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15710-RA 914 CG15710-RA 62..856 813..19 3975 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16347672..16348466 19..813 3975 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:27:05 has no hits.

BO05027.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:34 Download gff for BO05027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15710-PA 1..798 16..813 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:21 Download gff for BO05027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15710-PA 1..798 16..813 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:21 Download gff for BO05027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15710-RA 56..856 19..820 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:48:29 Download gff for BO05027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15710-RA 56..856 19..820 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:48:29 Download gff for BO05027.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16347672..16348472 19..820 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:21 Download gff for BO05027.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12235177..12235977 19..820 99   Plus

BO05027.5prime Sequence

827 bp (785 high quality bases) assembled on 2005-12-02

> BO05027.5prime
GAAGTTATCAGTCGACATGACAAGTGCTGGCAACTGGATTTCCGAGGAGC
TGGAACCAGCTACTCTACTGTCGATTCAGGAGGATAATGGTATTGTTACC
AAGGTGTACGTGGCGCCCTGTTTGCAGCCGATAAAAGAGGAGAAAGTTTT
CCTGGAGGACAACACGCAACGCTTCCACTGTCCGCTTTGCTCTAATGTGA
TTCGCACGGCCGGTGCCTACAAGGTCCATCTGATGGCCTGCCAAAGACGC
TTGGCACGCATGATGAAGGATGTGCCGGACGTGTCCCAGCATCAGTGCAA
CATTTGCAAGAAAATCTTCTCCTCGGTGGATGCCCTGATCGGCCACAGGC
TCCTGCATGGAAGCCCATCAATGAATCGCACCTGTGCATCCTGCCATGTC
AAGTTCGGGACGGATCTGGAGTATCGCACCCATTTGGAGAGCCATCTGAT
ACCGTGCGAGTCCACGGATGAATCCTACGAAGGGGCGTACACCATCACCA
AGACCTTCAATTGCGTCTTTTGTCGCACGGAGTTCAAGGCCTGCTTTAAG
CCTGGCCAAGTGACCCGTCGATACGCGTGCGACGCATGTATCGTAAGGCT
GAAGGCCCAGGAGGAGGAGAAAAAGATCTTAGGGAAGAGAAGGCCCGAAT
TAATCTGTGATCGTTGTGGGAAAAAGTACAAATATGAGGGTTTCCTTCAC
CGTCATCTGAAAACTTGCCAGATGCCGGATAAATGCAAAAGAAAGCGTGA
GATTGAAATCACCGAGGTCAGCGAGGTAACATTTACAGAAGTTGTGCAAA
GTTTTAATAATGCAAGCTTTCTAGACC

BO05027.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15710-PA 798 CG15710-RA 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15710-RA 914 CG15710-RA 62..856 17..811 3975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16347672..16348466 811..17 3975 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:52:37 has no hits.

BO05027.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:35 Download gff for BO05027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15710-PA 1..798 17..814 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:22 Download gff for BO05027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15710-PA 1..798 17..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:44:27 Download gff for BO05027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15710-RA 56..856 10..811 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:28 Download gff for BO05027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15710-RA 56..856 10..811 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:28 Download gff for BO05027.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16347672..16348472 10..811 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:44:27 Download gff for BO05027.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12235177..12235977 10..811 99   Minus

BO05027.complete Sequence

829 bp (829 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629947

> BO05027.complete
GAAGTTATCAGTCGACATGACAAGTGCTGGCAACTGGATTTCCGAGGAGC
TGGAACCAGCTACTCTACTGTCGATTCAGGAGGATAATGGTATTGTTACC
AAGGTGTACGTGGCGCCCTGTTTGCAGCCGATAAAAGAGGAGAAAGTTTT
CCTGGAGGACAACACGCAACGCTTCCACTGTCCGCTTTGCTCTAATGTGA
TTCGCACGGCCGGTGCCTACAAGGTCCATCTGATGGCCTGCCAAAGACGC
TTGGCACGCATGATGAAGGATGTGCCGGACGTGTCCCAGCATCAGTGCAA
CATTTGCAAGAAAATCTTCTCCTCGGTGGATGCCCTGATCGGCCACAGGC
TCCTGCATGGAAGCCCATCAATGAATCGCACCTGTGCATCCTGCCATGTC
AAGTTCGGGACGGATCTGGAGTATCGCACCCATTTGGAGAGCCATCTGAT
ACCGTGCGAGTCCACGGATGAATCCTACGAAGGGGCGTACACCATCACCA
AGACCTTCAATTGCGTCTTTTGTCGCACGGAGTTCAAGGCCTGCTTTAAG
CCTGGCCAAGTGACCCGTCGATACGCGTGCGACGCATGTATCGTAAGGCT
GAAGGCCCAGGAGGAGGAGAAAAAGATCTTAGGGAAGAGAAGGCCCGAAT
TAATCTGTGATCGTTGTGGGAAAAAGTACAAATATGAGGGTTTCCTTCAC
CGTCATCTGAAAACTTGCCAGATGCCGGATAAATGCAAAAGAAAGCGTGA
GATTGAAATCACCGAGGTCAGCGAGGTAACATTTACAGAAGTTGTGCAAA
GTTTTAATAATGCAAGCTTTCTAGACCAT

BO05027.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG15710-RA 798 CG15710-PA 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15710-RA 914 CG15710-RA 62..856 17..811 3975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16347672..16348466 811..17 3975 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:32:56 has no hits.

BO05027.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:51 Download gff for BO05027.complete
Subject Subject Range Query Range Percent Splice Strand
CG15710-RA 1..798 17..814 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:05:01 Download gff for BO05027.complete
Subject Subject Range Query Range Percent Splice Strand
CG15710-RA 1..798 17..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:35 Download gff for BO05027.complete
Subject Subject Range Query Range Percent Splice Strand
CG15710-RA 62..856 17..813 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:51 Download gff for BO05027.complete
Subject Subject Range Query Range Percent Splice Strand
CG15710-RA 1..798 17..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:49 Download gff for BO05027.complete
Subject Subject Range Query Range Percent Splice Strand
CG15710-RA 62..856 17..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:49 Download gff for BO05027.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16347669..16348466 17..813 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:35 Download gff for BO05027.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12235174..12235971 17..813 99   Minus

BO05027.pep Sequence

Translation from 16 to 829

> BO05027.pep
MTSAGNWISEELEPATLLSIQEDNGIVTKVYVAPCLQPIKEEKVFLEDNT
QRFHCPLCSNVIRTAGAYKVHLMACQRRLARMMKDVPDVSQHQCNICKKI
FSSVDALIGHRLLHGSPSMNRTCASCHVKFGTDLEYRTHLESHLIPCEST
DESYEGAYTITKTFNCVFCRTEFKACFKPGQVTRRYACDACIVRLKAQEE
EKKILGKRRPELICDRCGKKYKYEGFLHRHLKTCQMPDKCKRKREIEITE
VSEVTFTEVVQSFNNASFLDH

BO05027.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15710-PA 265 CG15710-PA 1..265 1..265 1430 100 Plus
CG3847-PA 380 CG3847-PA 186..380 53..247 321 35.3 Plus