Clone BO05031 Report

Search the DGRC for BO05031

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:31
Vector:pDNR-Dual
Associated Gene/Transcriptfd85E-RB
Protein status:BO05031.pep:
Sequenced Size:1360

Clone Sequence Records

BO05031.3prime Sequence

932 bp (846 high quality bases) assembled on 2005-12-02

> BO05031.3prime
ATGGTCTAGAAAGCTTGCTTTGAGACCCACATACCCAATGTTCATGGCTA
CAAAATAGTTAGTGTCCGGCGAATTGGTAGCACCGGTTAGATTGTTACCA
ATGCCAGCAGTGCGCTGCGGTCGTCTTTTGTAAAACTCAATCTCATCGAC
AGTCCAAACTGCTCCTTTCACATTCTCAACCCGCATAAAGCACTTATGAA
GGGACAGATTGTGCCGGACTGCGTTCTTCCACGTAGCTGCGTTGCGCCGG
AAGTAGCAAAATGTGTTTTGGAACCAGTTGTAGATTTCGTTTAGGGTTAA
CTGCTTGTCAGGGGAGTCAATTATAGCCTGTCTTATGAGGGAAGCATAAG
TAAAAGGCGGTCGTACATCAGCATTCTTATAAAACTCTCTGTTTCGATGG
ATTTCCTGTTGCACATCAAGACCTGCTCTTTCAAGCATATAGGGTAATCC
CCCATTTATGGAAAATGTATTTTTGTCGTGGTTTCTCTTTTTGATCGAGC
ACAAGTTGGTGGAATTAACCATTGGAAGATTCAGAGGACTCGGTGAATTT
GTTTGTCGGATGGGTCGGCCTATGCTATTTACGGTAAGCGGACTCCGGCA
AAACTTTCCCTCTCTTCCGGGCACGTCCTTCCTGTCGATTTTGGTGGGAG
ACAAAAGCTGCTTGGACAAATACAAGTGATGCATCATTGCCTGCAAGCGA
TCTCGTTCTTTTTGCAGGTGGGATTCCAGCTGGGAGACAACTTGCATTTG
AACCCGTGCCTGTGCTGTTGATCGATCGTCCAAACCATGTTCCGTATTCA
GATGCTTGACAAACGATGTGATGTCTTCCAAATCCATTTCGCAACCAGGC
CAACGGCATATGCCATGAGCAAATAACGGATGATAGTACTTCCGCATGGC
GAACTCATCGTGCATATAGCTGAAATCATTGT

BO05031.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG16899-PA 1074 CG16899-RA 762..1071 328..19 1550 100 Minus
CG16899-PA 1074 CG16899-RA 413..719 932..626 1535 100 Minus
CG16899-PA 1074 CG16899-RA 717..762 450..405 230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-RD 2832 CG43067-RD 1659..2572 932..19 4570 100 Minus
FoxP-RC 3359 CG43067-RC 1659..2367 932..224 3545 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9727411..9727619 19..227 1045 100 Plus
3R 32079331 3R 9728424..9728605 449..630 910 100 Plus
3R 32079331 3R 9728658..9728836 627..805 895 100 Plus
3R 32079331 3R 9728894..9729021 805..932 640 100 Plus
3R 32079331 3R 9727990..9728093 226..329 520 100 Plus
3R 32079331 3R 9728158..9728236 327..405 395 100 Plus
3R 32079331 3R 9728321..9728366 405..450 230 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:50:19 has no hits.

BO05031.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:40 Download gff for BO05031.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16899-PA 762..1074 18..328 99   Minus
CG16899-PA 413..719 626..932 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:30 Download gff for BO05031.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16899-PA 413..719 626..932 100 == Minus
CG16899-PA 762..1074 18..328 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:14:18 Download gff for BO05031.3prime
Subject Subject Range Query Range Percent Splice Strand
FoxP-RD 423..1342 10..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:24:14 Download gff for BO05031.3prime
Subject Subject Range Query Range Percent Splice Strand
FoxP-RD 1659..2578 10..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:24:14 Download gff for BO05031.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9727405..9727617 10..225 98 <- Plus
3R 9727990..9728091 226..327 100 <- Plus
3R 9728159..9728235 328..404 100 <- Plus
3R 9728321..9728365 405..449 100 <- Plus
3R 9728425..9728602 450..627 100 <- Plus
3R 9728659..9728836 628..805 100 <- Plus
3R 9728895..9729021 806..932 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:14:18 Download gff for BO05031.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5553127..5553339 10..225 98 <- Plus
arm_3R 5553712..5553813 226..327 100 <- Plus
arm_3R 5553881..5553957 328..404 100 <- Plus
arm_3R 5554043..5554087 405..449 100 <- Plus
arm_3R 5554147..5554324 450..627 100 <- Plus
arm_3R 5554381..5554558 628..805 100 <- Plus
arm_3R 5554617..5554743 806..932 100   Plus

BO05031.5prime Sequence

834 bp (756 high quality bases) assembled on 2005-12-02

> BO05031.5prime
GAAGTTATCAGTCGACATGCATCGGATACATGACGACGAGTATTCCGAGG
ATGCCAAGGAATCGGACTTTAAGAGTTCGATTCAGAAGGAGATATCAGTG
AAGTCGAGACACCAAATTTCCATACCAGACATATGCTCAGATGCTGTTAA
GAACAATTGTTTTCCGCCGACTGGCTTTCTCAATAACTCGATCACCTTTG
CCTCACATGTAGTTAAGTGCAGCTCACCGGCCTCGAGCATCGATGAATCC
TCAACGGCGGCCCAGCAGCACGAATCCAATCCACACATGCATATACAGGG
TCAGCATATGATGGCTCCCGTTCCCGATCTGGGTTTCTACAATGTGCCCG
AGTTCATATCCGAGCAGGAGAAGCTCATGTTCTCCGATGCAGAGAGATTC
TTGCGGTCGAAGGATAATGAGGTGTGCAACAATGATTTCAGCTATATGCA
CGATGAGTTCGCCATGCGGAAGTACTATCATCCGTTATTTGCTCATGGCA
TATGCCGTTGGCCTGGTTGCGAAATGGATTTGGAAGACATCACATCGTTT
GTCAAGCATCTGAATACGGAACATGGTTTGGACGATCGATCAACAGCACA
GGCACGGGTTCAAATGCAAGTTGTCTCCCAGCTGGAATCCCACCTGCAAA
AAGAACGAGATCGCTTGCAGGCAATGATGCATCACTTGTATTTGTCCAAG
CAGCTTTTGTCTCCCACCAAAATCGACAGGAAGGACGTGCCCGGAAGAGA
GGGAAAGTTTTGCCGGAGTCCGCTTACCGTAAATAGCATAGGCCGACCCA
TCCGACAAACAAATTCACCGAGTCCTCTGAATCT

BO05031.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG16899-PA 1074 CG16899-RA 1..719 17..735 3595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-RC 3359 CG43067-RC 1245..2064 15..834 4100 100 Plus
FoxP-RD 2832 CG43067-RD 1245..2064 15..834 4100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9728894..9729435 556..15 2710 100 Minus
3R 32079331 3R 9728658..9728836 734..556 895 100 Minus
3R 32079331 3R 9728502..9728605 834..731 520 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:33:31 has no hits.

BO05031.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:41 Download gff for BO05031.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16899-PA 1..725 17..742 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:32 Download gff for BO05031.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16899-PA 1..725 17..742 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:12 Download gff for BO05031.5prime
Subject Subject Range Query Range Percent Splice Strand
FoxP-RD 9..828 15..834 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:18:27 Download gff for BO05031.5prime
Subject Subject Range Query Range Percent Splice Strand
FoxP-RD 1245..2064 15..834 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:18:27 Download gff for BO05031.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9728502..9728602 734..834 100 <- Minus
3R 9728659..9728836 556..733 100 <- Minus
3R 9728895..9729435 15..555 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:12 Download gff for BO05031.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5554224..5554324 734..834 100 <- Minus
arm_3R 5554381..5554558 556..733 100 <- Minus
arm_3R 5554617..5555157 15..555 100   Minus

BO05031.complete Sequence

1360 bp (1360 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629948

> BO05031.complete
GAAGTTATCAGTCGACATGCATCGGATACATGACGACGAGTATTCCGAGG
ATGCCAAGGAATCGGACTTTAAGAGTTCGATTCAGAAGGAGATATCAGTG
AAGTCGAGACACCAAATTTCCATACCAGACATATGCTCAGATGCTGTTAA
GAACAATTGTTTTCCGCCGACTGGCTTTCTCAATAACTCGATCACCTTTG
CCTCACATGTAGTTAAGTGCAGCTCACCGGCCTCGAGCATCGATGAATCC
TCAACGGCGGCCCAGCAGCACGAATCCAATCCACACATGCATATACAGGG
TCAGCATATGATGGCTCCCGTTCCCGATCTGGGTTTCTACAATGTGCCCG
AGTTCATATCCGAGCAGGAGAAGCTCATGTTCTCCGATGCAGAGAGATTC
TTGCGGTCGAAGGATAATGAGGTGTGCAACAATGATTTCAGCTATATGCA
CGATGAGTTCGCCATGCGGAAGTACTATCATCCGTTATTTGCTCATGGCA
TATGCCGTTGGCCTGGTTGCGAAATGGATTTGGAAGACATCACATCGTTT
GTCAAGCATCTGAATACGGAACATGGTTTGGACGATCGATCAACAGCACA
GGCACGGGTTCAAATGCAAGTTGTCTCCCAGCTGGAATCCCACCTGCAAA
AAGAACGAGATCGCTTGCAGGCAATGATGCATCACTTGTATTTGTCCAAG
CAGCTTTTGTCTCCCACCAAAATCGACAGGAAGGACGTGCCCGGAAGAGA
GGGAAAGTTTTGCCGGAGTCCGCTTACCGTAAATAGCATAGGCCGACCCA
TCCGACAAACAAATTCACCGAGTCCTCTGAATCTTCCAATGGTTAATTCC
ACCAACTTGTGCTCGATCAAAAAGAGAAACCACGACAAAAATACATTTTC
CATAAATGGGGGATTACCCTATATGCTTGAAAGAGCAGGTCTTGATGTGC
AACAGGAAATCCATCGAAACAGAGAGTTTTATAAGAATGCTGATGTACGA
CCGCCTTTTACTTATGCTTCCCTCATAAGACAGGCTATAATTGACTCCCC
TGACAAGCAGTTAACCCTAAACGAAATCTACAACTGGTTCCAAAACACAT
TTTGCTACTTCCGGCGCAACGCAGCTACGTGGAAGAACGCAGTCCGGCAC
AATCTGTCCCTTCATAAGTGCTTTATGCGGGTTGAGAATGTGAAAGGAGC
AGTTTGGACTGTCGATGAGATTGAGTTTTACAAAAGACGACCGCAGCGCA
CTGCTGGCATTGGTAACAATCTAACCGGTGCTACCAATTCGCCGGACACT
AACTATTTTGTAGCCATGAACATTGGGTATGTGGGTCTCAAAGCAAGCTT
TCTAGACCAT

BO05031.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-RD 1329 CG43067-PD 1..1326 17..1342 6630 100 Plus
FoxP-RC 1563 CG43067-PC 1..1121 17..1137 5605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-RD 2832 CG43067-RD 1245..2572 15..1342 6640 100 Plus
FoxP-RC 3359 CG43067-RC 1245..2367 15..1137 5615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9728894..9729435 556..15 2710 100 Minus
3R 32079331 3R 9727411..9727619 1342..1134 1045 100 Minus
3R 32079331 3R 9728424..9728605 912..731 910 100 Minus
3R 32079331 3R 9728658..9728836 734..556 895 100 Minus
3R 32079331 3R 9727990..9728093 1135..1032 520 100 Minus
3R 32079331 3R 9728158..9728236 1034..956 395 100 Minus
3R 32079331 3R 9728321..9728366 956..911 230 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:29:09 has no hits.

BO05031.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:39 Download gff for BO05031.complete
Subject Subject Range Query Range Percent Splice Strand
CG16899-RB 1..1329 17..1343 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:45 Download gff for BO05031.complete
Subject Subject Range Query Range Percent Splice Strand
CG16899-RB 9..1342 15..1351 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:42 Download gff for BO05031.complete
Subject Subject Range Query Range Percent Splice Strand
FoxP-RD 11..1336 17..1344 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:39 Download gff for BO05031.complete
Subject Subject Range Query Range Percent Splice Strand
CG16899-RB 9..1342 15..1351 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:30 Download gff for BO05031.complete
Subject Subject Range Query Range Percent Splice Strand
FoxP-RD 1247..2572 17..1344 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:30 Download gff for BO05031.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9727409..9727617 1136..1344 99 <- Minus
3R 9727990..9728091 1034..1135 100 <- Minus
3R 9728159..9728235 957..1033 100 <- Minus
3R 9728321..9728365 912..956 100 <- Minus
3R 9728425..9728602 734..911 100 <- Minus
3R 9728659..9728836 556..733 100 <- Minus
3R 9728895..9729433 17..555 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:42 Download gff for BO05031.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5553131..5553339 1136..1344 99 <- Minus
arm_3R 5553712..5553813 1034..1135 100 <- Minus
arm_3R 5553881..5553957 957..1033 100 <- Minus
arm_3R 5554043..5554087 912..956 100 <- Minus
arm_3R 5554147..5554324 734..911 100 <- Minus
arm_3R 5554381..5554558 556..733 100 <- Minus
arm_3R 5554617..5555155 17..555 100   Minus

BO05031.pep Sequence

Translation from 16 to 1360

> BO05031.pep
MHRIHDDEYSEDAKESDFKSSIQKEISVKSRHQISIPDICSDAVKNNCFP
PTGFLNNSITFASHVVKCSSPASSIDESSTAAQQHESNPHMHIQGQHMMA
PVPDLGFYNVPEFISEQEKLMFSDAERFLRSKDNEVCNNDFSYMHDEFAM
RKYYHPLFAHGICRWPGCEMDLEDITSFVKHLNTEHGLDDRSTAQARVQM
QVVSQLESHLQKERDRLQAMMHHLYLSKQLLSPTKIDRKDVPGREGKFCR
SPLTVNSIGRPIRQTNSPSPLNLPMVNSTNLCSIKKRNHDKNTFSINGGL
PYMLERAGLDVQQEIHRNREFYKNADVRPPFTYASLIRQAIIDSPDKQLT
LNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVD
EIEFYKRRPQRTAGIGNNLTGATNSPDTNYFVAMNIGYVGLKASFLDH

BO05031.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-PD 442 CG43067-PD 1..442 1..442 2367 100 Plus
FoxP-PC 520 CG43067-PC 1..408 1..408 2115 96.8 Plus
slp1-PA 322 CG16738-PA 59..197 266..400 211 34 Plus
croc-PA 508 CG5069-PA 51..147 301..400 200 40 Plus
fd96Cb-PA 271 CG11922-PA 11..94 326..404 187 42.9 Plus