Clone Sequence Records
BO05031.3prime Sequence
932 bp (846 high quality bases) assembled on 2005-12-02
> BO05031.3prime
ATGGTCTAGAAAGCTTGCTTTGAGACCCACATACCCAATGTTCATGGCTA
CAAAATAGTTAGTGTCCGGCGAATTGGTAGCACCGGTTAGATTGTTACCA
ATGCCAGCAGTGCGCTGCGGTCGTCTTTTGTAAAACTCAATCTCATCGAC
AGTCCAAACTGCTCCTTTCACATTCTCAACCCGCATAAAGCACTTATGAA
GGGACAGATTGTGCCGGACTGCGTTCTTCCACGTAGCTGCGTTGCGCCGG
AAGTAGCAAAATGTGTTTTGGAACCAGTTGTAGATTTCGTTTAGGGTTAA
CTGCTTGTCAGGGGAGTCAATTATAGCCTGTCTTATGAGGGAAGCATAAG
TAAAAGGCGGTCGTACATCAGCATTCTTATAAAACTCTCTGTTTCGATGG
ATTTCCTGTTGCACATCAAGACCTGCTCTTTCAAGCATATAGGGTAATCC
CCCATTTATGGAAAATGTATTTTTGTCGTGGTTTCTCTTTTTGATCGAGC
ACAAGTTGGTGGAATTAACCATTGGAAGATTCAGAGGACTCGGTGAATTT
GTTTGTCGGATGGGTCGGCCTATGCTATTTACGGTAAGCGGACTCCGGCA
AAACTTTCCCTCTCTTCCGGGCACGTCCTTCCTGTCGATTTTGGTGGGAG
ACAAAAGCTGCTTGGACAAATACAAGTGATGCATCATTGCCTGCAAGCGA
TCTCGTTCTTTTTGCAGGTGGGATTCCAGCTGGGAGACAACTTGCATTTG
AACCCGTGCCTGTGCTGTTGATCGATCGTCCAAACCATGTTCCGTATTCA
GATGCTTGACAAACGATGTGATGTCTTCCAAATCCATTTCGCAACCAGGC
CAACGGCATATGCCATGAGCAAATAACGGATGATAGTACTTCCGCATGGC
GAACTCATCGTGCATATAGCTGAAATCATTGT
BO05031.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16899-PA | 1074 | CG16899-RA | 762..1071 | 328..19 | 1550 | 100 | Minus |
CG16899-PA | 1074 | CG16899-RA | 413..719 | 932..626 | 1535 | 100 | Minus |
CG16899-PA | 1074 | CG16899-RA | 717..762 | 450..405 | 230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-RD | 2832 | CG43067-RD | 1659..2572 | 932..19 | 4570 | 100 | Minus |
FoxP-RC | 3359 | CG43067-RC | 1659..2367 | 932..224 | 3545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:50:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9727411..9727619 | 19..227 | 1045 | 100 | Plus |
3R | 32079331 | 3R | 9728424..9728605 | 449..630 | 910 | 100 | Plus |
3R | 32079331 | 3R | 9728658..9728836 | 627..805 | 895 | 100 | Plus |
3R | 32079331 | 3R | 9728894..9729021 | 805..932 | 640 | 100 | Plus |
3R | 32079331 | 3R | 9727990..9728093 | 226..329 | 520 | 100 | Plus |
3R | 32079331 | 3R | 9728158..9728236 | 327..405 | 395 | 100 | Plus |
3R | 32079331 | 3R | 9728321..9728366 | 405..450 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:50:19 has no hits.
BO05031.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:40 Download gff for
BO05031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-PA | 762..1074 | 18..328 | 99 | | Minus |
CG16899-PA | 413..719 | 626..932 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:30 Download gff for
BO05031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-PA | 413..719 | 626..932 | 100 | == | Minus |
CG16899-PA | 762..1074 | 18..328 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:14:18 Download gff for
BO05031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RD | 423..1342 | 10..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:24:14 Download gff for
BO05031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RD | 1659..2578 | 10..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:24:14 Download gff for
BO05031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9727405..9727617 | 10..225 | 98 | <- | Plus |
3R | 9727990..9728091 | 226..327 | 100 | <- | Plus |
3R | 9728159..9728235 | 328..404 | 100 | <- | Plus |
3R | 9728321..9728365 | 405..449 | 100 | <- | Plus |
3R | 9728425..9728602 | 450..627 | 100 | <- | Plus |
3R | 9728659..9728836 | 628..805 | 100 | <- | Plus |
3R | 9728895..9729021 | 806..932 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:14:18 Download gff for
BO05031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5553127..5553339 | 10..225 | 98 | <- | Plus |
arm_3R | 5553712..5553813 | 226..327 | 100 | <- | Plus |
arm_3R | 5553881..5553957 | 328..404 | 100 | <- | Plus |
arm_3R | 5554043..5554087 | 405..449 | 100 | <- | Plus |
arm_3R | 5554147..5554324 | 450..627 | 100 | <- | Plus |
arm_3R | 5554381..5554558 | 628..805 | 100 | <- | Plus |
arm_3R | 5554617..5554743 | 806..932 | 100 | | Plus |
BO05031.5prime Sequence
834 bp (756 high quality bases) assembled on 2005-12-02
> BO05031.5prime
GAAGTTATCAGTCGACATGCATCGGATACATGACGACGAGTATTCCGAGG
ATGCCAAGGAATCGGACTTTAAGAGTTCGATTCAGAAGGAGATATCAGTG
AAGTCGAGACACCAAATTTCCATACCAGACATATGCTCAGATGCTGTTAA
GAACAATTGTTTTCCGCCGACTGGCTTTCTCAATAACTCGATCACCTTTG
CCTCACATGTAGTTAAGTGCAGCTCACCGGCCTCGAGCATCGATGAATCC
TCAACGGCGGCCCAGCAGCACGAATCCAATCCACACATGCATATACAGGG
TCAGCATATGATGGCTCCCGTTCCCGATCTGGGTTTCTACAATGTGCCCG
AGTTCATATCCGAGCAGGAGAAGCTCATGTTCTCCGATGCAGAGAGATTC
TTGCGGTCGAAGGATAATGAGGTGTGCAACAATGATTTCAGCTATATGCA
CGATGAGTTCGCCATGCGGAAGTACTATCATCCGTTATTTGCTCATGGCA
TATGCCGTTGGCCTGGTTGCGAAATGGATTTGGAAGACATCACATCGTTT
GTCAAGCATCTGAATACGGAACATGGTTTGGACGATCGATCAACAGCACA
GGCACGGGTTCAAATGCAAGTTGTCTCCCAGCTGGAATCCCACCTGCAAA
AAGAACGAGATCGCTTGCAGGCAATGATGCATCACTTGTATTTGTCCAAG
CAGCTTTTGTCTCCCACCAAAATCGACAGGAAGGACGTGCCCGGAAGAGA
GGGAAAGTTTTGCCGGAGTCCGCTTACCGTAAATAGCATAGGCCGACCCA
TCCGACAAACAAATTCACCGAGTCCTCTGAATCT
BO05031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16899-PA | 1074 | CG16899-RA | 1..719 | 17..735 | 3595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-RC | 3359 | CG43067-RC | 1245..2064 | 15..834 | 4100 | 100 | Plus |
FoxP-RD | 2832 | CG43067-RD | 1245..2064 | 15..834 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9728894..9729435 | 556..15 | 2710 | 100 | Minus |
3R | 32079331 | 3R | 9728658..9728836 | 734..556 | 895 | 100 | Minus |
3R | 32079331 | 3R | 9728502..9728605 | 834..731 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:33:31 has no hits.
BO05031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:41 Download gff for
BO05031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-PA | 1..725 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:32 Download gff for
BO05031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-PA | 1..725 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:12 Download gff for
BO05031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RD | 9..828 | 15..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:18:27 Download gff for
BO05031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RD | 1245..2064 | 15..834 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:18:27 Download gff for
BO05031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9728502..9728602 | 734..834 | 100 | <- | Minus |
3R | 9728659..9728836 | 556..733 | 100 | <- | Minus |
3R | 9728895..9729435 | 15..555 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:12 Download gff for
BO05031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5554224..5554324 | 734..834 | 100 | <- | Minus |
arm_3R | 5554381..5554558 | 556..733 | 100 | <- | Minus |
arm_3R | 5554617..5555157 | 15..555 | 100 | | Minus |
BO05031.complete Sequence
1360 bp (1360 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629948
> BO05031.complete
GAAGTTATCAGTCGACATGCATCGGATACATGACGACGAGTATTCCGAGG
ATGCCAAGGAATCGGACTTTAAGAGTTCGATTCAGAAGGAGATATCAGTG
AAGTCGAGACACCAAATTTCCATACCAGACATATGCTCAGATGCTGTTAA
GAACAATTGTTTTCCGCCGACTGGCTTTCTCAATAACTCGATCACCTTTG
CCTCACATGTAGTTAAGTGCAGCTCACCGGCCTCGAGCATCGATGAATCC
TCAACGGCGGCCCAGCAGCACGAATCCAATCCACACATGCATATACAGGG
TCAGCATATGATGGCTCCCGTTCCCGATCTGGGTTTCTACAATGTGCCCG
AGTTCATATCCGAGCAGGAGAAGCTCATGTTCTCCGATGCAGAGAGATTC
TTGCGGTCGAAGGATAATGAGGTGTGCAACAATGATTTCAGCTATATGCA
CGATGAGTTCGCCATGCGGAAGTACTATCATCCGTTATTTGCTCATGGCA
TATGCCGTTGGCCTGGTTGCGAAATGGATTTGGAAGACATCACATCGTTT
GTCAAGCATCTGAATACGGAACATGGTTTGGACGATCGATCAACAGCACA
GGCACGGGTTCAAATGCAAGTTGTCTCCCAGCTGGAATCCCACCTGCAAA
AAGAACGAGATCGCTTGCAGGCAATGATGCATCACTTGTATTTGTCCAAG
CAGCTTTTGTCTCCCACCAAAATCGACAGGAAGGACGTGCCCGGAAGAGA
GGGAAAGTTTTGCCGGAGTCCGCTTACCGTAAATAGCATAGGCCGACCCA
TCCGACAAACAAATTCACCGAGTCCTCTGAATCTTCCAATGGTTAATTCC
ACCAACTTGTGCTCGATCAAAAAGAGAAACCACGACAAAAATACATTTTC
CATAAATGGGGGATTACCCTATATGCTTGAAAGAGCAGGTCTTGATGTGC
AACAGGAAATCCATCGAAACAGAGAGTTTTATAAGAATGCTGATGTACGA
CCGCCTTTTACTTATGCTTCCCTCATAAGACAGGCTATAATTGACTCCCC
TGACAAGCAGTTAACCCTAAACGAAATCTACAACTGGTTCCAAAACACAT
TTTGCTACTTCCGGCGCAACGCAGCTACGTGGAAGAACGCAGTCCGGCAC
AATCTGTCCCTTCATAAGTGCTTTATGCGGGTTGAGAATGTGAAAGGAGC
AGTTTGGACTGTCGATGAGATTGAGTTTTACAAAAGACGACCGCAGCGCA
CTGCTGGCATTGGTAACAATCTAACCGGTGCTACCAATTCGCCGGACACT
AACTATTTTGTAGCCATGAACATTGGGTATGTGGGTCTCAAAGCAAGCTT
TCTAGACCAT
BO05031.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-RD | 1329 | CG43067-PD | 1..1326 | 17..1342 | 6630 | 100 | Plus |
FoxP-RC | 1563 | CG43067-PC | 1..1121 | 17..1137 | 5605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-RD | 2832 | CG43067-RD | 1245..2572 | 15..1342 | 6640 | 100 | Plus |
FoxP-RC | 3359 | CG43067-RC | 1245..2367 | 15..1137 | 5615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9728894..9729435 | 556..15 | 2710 | 100 | Minus |
3R | 32079331 | 3R | 9727411..9727619 | 1342..1134 | 1045 | 100 | Minus |
3R | 32079331 | 3R | 9728424..9728605 | 912..731 | 910 | 100 | Minus |
3R | 32079331 | 3R | 9728658..9728836 | 734..556 | 895 | 100 | Minus |
3R | 32079331 | 3R | 9727990..9728093 | 1135..1032 | 520 | 100 | Minus |
3R | 32079331 | 3R | 9728158..9728236 | 1034..956 | 395 | 100 | Minus |
3R | 32079331 | 3R | 9728321..9728366 | 956..911 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:29:09 has no hits.
BO05031.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:39 Download gff for
BO05031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-RB | 1..1329 | 17..1343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:45 Download gff for
BO05031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-RB | 9..1342 | 15..1351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:42 Download gff for
BO05031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RD | 11..1336 | 17..1344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:39 Download gff for
BO05031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-RB | 9..1342 | 15..1351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:30 Download gff for
BO05031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RD | 1247..2572 | 17..1344 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:30 Download gff for
BO05031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9727409..9727617 | 1136..1344 | 99 | <- | Minus |
3R | 9727990..9728091 | 1034..1135 | 100 | <- | Minus |
3R | 9728159..9728235 | 957..1033 | 100 | <- | Minus |
3R | 9728321..9728365 | 912..956 | 100 | <- | Minus |
3R | 9728425..9728602 | 734..911 | 100 | <- | Minus |
3R | 9728659..9728836 | 556..733 | 100 | <- | Minus |
3R | 9728895..9729433 | 17..555 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:42 Download gff for
BO05031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5553131..5553339 | 1136..1344 | 99 | <- | Minus |
arm_3R | 5553712..5553813 | 1034..1135 | 100 | <- | Minus |
arm_3R | 5553881..5553957 | 957..1033 | 100 | <- | Minus |
arm_3R | 5554043..5554087 | 912..956 | 100 | <- | Minus |
arm_3R | 5554147..5554324 | 734..911 | 100 | <- | Minus |
arm_3R | 5554381..5554558 | 556..733 | 100 | <- | Minus |
arm_3R | 5554617..5555155 | 17..555 | 100 | | Minus |
BO05031.pep Sequence
Translation from 16 to 1360
> BO05031.pep
MHRIHDDEYSEDAKESDFKSSIQKEISVKSRHQISIPDICSDAVKNNCFP
PTGFLNNSITFASHVVKCSSPASSIDESSTAAQQHESNPHMHIQGQHMMA
PVPDLGFYNVPEFISEQEKLMFSDAERFLRSKDNEVCNNDFSYMHDEFAM
RKYYHPLFAHGICRWPGCEMDLEDITSFVKHLNTEHGLDDRSTAQARVQM
QVVSQLESHLQKERDRLQAMMHHLYLSKQLLSPTKIDRKDVPGREGKFCR
SPLTVNSIGRPIRQTNSPSPLNLPMVNSTNLCSIKKRNHDKNTFSINGGL
PYMLERAGLDVQQEIHRNREFYKNADVRPPFTYASLIRQAIIDSPDKQLT
LNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVD
EIEFYKRRPQRTAGIGNNLTGATNSPDTNYFVAMNIGYVGLKASFLDH
BO05031.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-PD | 442 | CG43067-PD | 1..442 | 1..442 | 2367 | 100 | Plus |
FoxP-PC | 520 | CG43067-PC | 1..408 | 1..408 | 2115 | 96.8 | Plus |
slp1-PA | 322 | CG16738-PA | 59..197 | 266..400 | 211 | 34 | Plus |
croc-PA | 508 | CG5069-PA | 51..147 | 301..400 | 200 | 40 | Plus |
fd96Cb-PA | 271 | CG11922-PA | 11..94 | 326..404 | 187 | 42.9 | Plus |