Clone BO05033 Report

Search the DGRC for BO05033

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG17195-RA
Protein status:BO05033.pep: validated full length
Sequenced Size:883

Clone Sequence Records

BO05033.3prime Sequence

834 bp (829 high quality bases) assembled on 2005-12-02

> BO05033.3prime
ATGGTCTAGAAAGCTTGCGTGAGACTGCTTCATCTGCCAATGTGCACCGT
CATGGGGCAAAGGACTCTTCAGCAAGGGCGATATAAAAGTCCAAAGTCCT
CGTTGGCCCATTATTGTCTGGCAGTTCTTTCGGAAACCCAGATCGTAGGT
GCAATCAAAAATATTATAGTAGGTAGAGTTTTGGCTTAAAATCTGCATTT
GATATGCCAACATAAAGGCAGGCATATAGCTGGCGCTTATATTCAAGAGG
AAGGCAATGGTCTCAAAAGTATTGCCAGTATAATTTTGGAAAAAAGTCCT
AGTTATTAAATTAAAAATCACAGACGAGAGACTCATGAAGTTACCGCCAT
TCTGCAGGATAAACATACAAAATGTTGCAAAGCTTGTGACTAAGCCGAGC
GTTAAATAAAATGTGAACCAGAAGAAAAAGCGTTGATTATTGTGTCCAAT
GCAAGTGCCCGTGAATATACAGTGGTGGTCCCGTCTCAAAATGCAGGTGT
TGCACAAAACGCAGTGCCAGGATCGTGGCGATCTCAGCTTTTTACACGAT
TCGCAATAGTGCCACAGGGGCTCATCCTCTGGATTCGGGCATCGGGAGTC
CTTGGACAAGGTGTTTACCGATGAGCTAGTCATATAGCAGGCCAGCATGT
TACCAAGTATGTTGTGCGTTATGAAGGTGACCAATATCCAGTAGAGCTTG
TAAGCAATGTCGCCAAACACTTTGGGCGCAATGTAAAACATCTGCAGTGA
GAAGAAGAAAGCTGTGCTGCACAGGACGAAAACTATCGAAAGTGGATGCA
CTATCCTCACAAAGTTCTTCGGGTAGCGATTGGC

BO05033.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-PA 852 CG17195-RA 34..849 834..19 4080 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-RA 923 CG17195-RA 51..866 834..19 4080 100 Minus
CG17196-RC 881 CG17196-RC 257..426 573..404 325 80.1 Minus
CG17196-RB 875 CG17196-RB 251..420 573..404 325 80.1 Minus
CG17196-RC 881 CG17196-RC 587..759 222..50 295 78.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25776333..25777148 19..834 4080 100 Plus
3R 32079331 3R 25775743..25775912 404..573 310 78.8 Plus
3R 32079331 3R 25775410..25775582 50..222 295 78 Plus
3R 32079331 3R 25774821..25774936 413..528 220 79.3 Plus
Blast to na_te.dros performed on 2015-02-13 13:38:32 has no hits.

BO05033.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:44 Download gff for BO05033.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-PA 34..852 15..834 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:37 Download gff for BO05033.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-PA 34..852 15..834 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:44:04 Download gff for BO05033.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 51..872 11..834 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:04:34 Download gff for BO05033.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 51..872 11..834 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:04:34 Download gff for BO05033.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25776327..25777148 11..834 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:44:04 Download gff for BO05033.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21602049..21602870 11..834 99   Plus

BO05033.5prime Sequence

413 bp (412 high quality bases) assembled on 2005-12-02

> BO05033.5prime
GAAGTTATCAGTCGACATGTGCTACGTGAATAGATTTTGCCATTACTTTG
CCAATCGCTACCCGAAGAACTTTGTGAGGATAGTGCATCCACTTTCGATA
GTTTTCGTCCTGTGCAGCACAGCTTTCTTCTTCTCACTGCAGATGTTTTA
CATTGCGCCCAAAGTGTTTGGCGACATTGCTTACAAGCTCTACTGGATAT
TGGTCACCTTCATAACGCACAACATACTTGGTAACATGCTGGCCTGCTAT
ATGACTAGCTCATCGGTAAACACCTTGTCCAAGGACTCCCGATGCCCGAA
TCCAGAGGATGAGCCCCTGTGGCACTATTGCGAATCGTGTAAAAAGCTGA
GATCGCCACGATCCTGGCACTGCGTTTTGTGCAACACCTGCATTTTGAGA
CGGGACCACCACT

BO05033.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-PA 852 CG17195-RA 1..397 17..413 1985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-RA 923 CG17195-RA 18..414 17..413 1985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25776785..25777181 413..17 1985 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:27:25 has no hits.

BO05033.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:45 Download gff for BO05033.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-PA 1..397 17..413 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:38 Download gff for BO05033.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-PA 1..397 17..413 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:26 Download gff for BO05033.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..414 17..413 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:49:46 Download gff for BO05033.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..414 17..413 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:49:46 Download gff for BO05033.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25776785..25777181 17..413 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:26 Download gff for BO05033.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21602507..21602903 17..413 100   Minus

BO05033.complete Sequence

883 bp (883 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629949

> BO05033.complete
GAAGTTATCAGTCGACATGTGCTACGTGAATAGATTTTGCCATTACTTTG
CCAATCGCTACCCGAAGAACTTTGTGAGGATAGTGCATCCACTTTCGATA
GTTTTCGTCCTGTGCAGCACAGCTTTCTTCTTCTCACTGCAGATGTTTTA
CATTGCGCCCAAAGTGTTTGGCGACATTGCTTACAAGCTCTACTGGATAT
TGGTCACCTTCATAACGCACAACATACTTGGTAACATGCTGGCCTGCTAT
ATGACTAGCTCATCGGTAAACACCTTGTCCAAGGACTCCCGATGCCCGAA
TCCAGAGGATGAGCCCCTGTGGCACTATTGCGAATCGTGTAAAAAGCTGA
GATCGCCACGATCCTGGCACTGCGTTTTGTGCAACACCTGCATTTTGAGA
CGGGACCACCACTGTATATTCACGGGCACTTGCATTGGACACAATAATCA
ACGCTTTTTCTTCTGGTTCACATTTTATTTAACGCTCGGCTTAGTCACAA
GCTTTGCAACATTTTGTATGTTTATCCTGCAGAATGGCGGTAACTTCATG
AGTCTCTCGTCTGTGATTTTTAATTTAATAACTAGGACTTTTTTCCAAAA
TTATACTGGCAATACTTTTGAGACCATTGCCTTCCTCTTGAATATAAGCG
CCAGCTATATGCCTGCCTTTATGTTGGCATATCAAATGCAGATTTTAAGC
CAAAACTCTACCTACTATAATATTTTTGATTGCACCTACGATCTGGGTTT
CCGAAAGAACTGCCAGACAATAATGGGCCAACGAGGACTTTGGACTTTTA
TATCGCCCTTGCTGAAGAGTCCTTTGCCCCATGACGGTGCACATTGGCAG
ATGAAGCAGTCTCACGCAAGCTTTCTAGACCAT

BO05033.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-RA 852 CG17195-PA 1..849 17..865 4245 100 Plus
CG17196-RC 762 CG17196-PC 226..395 311..480 310 78.8 Plus
CG17196-RB 756 CG17196-PB 220..389 311..480 310 78.8 Plus
CG17196-RC 762 CG17196-PC 556..728 662..834 295 78 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-RA 923 CG17195-RA 18..866 17..865 4245 100 Plus
CG17196-RC 881 CG17196-RC 257..426 311..480 310 78.8 Plus
CG17196-RB 875 CG17196-RB 251..420 311..480 310 78.8 Plus
CG17196-RC 881 CG17196-RC 587..759 662..834 295 78 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25776333..25777181 865..17 4245 100 Minus
3R 32079331 3R 25775743..25775912 480..311 310 78.8 Minus
3R 32079331 3R 25775410..25775582 834..662 295 78 Minus
3R 32079331 3R 25774821..25774936 471..356 220 79.3 Minus
Blast to na_te.dros performed on 2014-11-27 14:35:15 has no hits.

BO05033.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:41 Download gff for BO05033.complete
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 1..852 17..869 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:47 Download gff for BO05033.complete
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..872 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:41 Download gff for BO05033.complete
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..866 17..867 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:41 Download gff for BO05033.complete
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..872 17..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:37 Download gff for BO05033.complete
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..866 17..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:37 Download gff for BO05033.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25776331..25777181 17..867 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:41 Download gff for BO05033.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21602053..21602903 17..867 99   Minus

BO05033.pep Sequence

Translation from 16 to 883

> BO05033.pep
MCYVNRFCHYFANRYPKNFVRIVHPLSIVFVLCSTAFFFSLQMFYIAPKV
FGDIAYKLYWILVTFITHNILGNMLACYMTSSSVNTLSKDSRCPNPEDEP
LWHYCESCKKLRSPRSWHCVLCNTCILRRDHHCIFTGTCIGHNNQRFFFW
FTFYLTLGLVTSFATFCMFILQNGGNFMSLSSVIFNLITRTFFQNYTGNT
FETIAFLLNISASYMPAFMLAYQMQILSQNSTYYNIFDCTYDLGFRKNCQ
TIMGQRGLWTFISPLLKSPLPHDGAHWQMKQSHASFLDH

BO05033.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-PA 283 CG17195-PA 1..283 1..283 1573 100 Plus
CG17196-PA 276 CG17196-PA 1..274 1..281 825 54.4 Plus
CG17197-PB 290 CG17197-PB 1..275 1..281 722 46.6 Plus
CG17196-PB 251 CG17196-PB 1..249 1..281 715 49.8 Plus
CG17196-PC 253 CG17196-PC 1..251 1..281 714 49.5 Plus