Clone Sequence Records
BO05033.3prime Sequence
834 bp (829 high quality bases) assembled on 2005-12-02
> BO05033.3prime
ATGGTCTAGAAAGCTTGCGTGAGACTGCTTCATCTGCCAATGTGCACCGT
CATGGGGCAAAGGACTCTTCAGCAAGGGCGATATAAAAGTCCAAAGTCCT
CGTTGGCCCATTATTGTCTGGCAGTTCTTTCGGAAACCCAGATCGTAGGT
GCAATCAAAAATATTATAGTAGGTAGAGTTTTGGCTTAAAATCTGCATTT
GATATGCCAACATAAAGGCAGGCATATAGCTGGCGCTTATATTCAAGAGG
AAGGCAATGGTCTCAAAAGTATTGCCAGTATAATTTTGGAAAAAAGTCCT
AGTTATTAAATTAAAAATCACAGACGAGAGACTCATGAAGTTACCGCCAT
TCTGCAGGATAAACATACAAAATGTTGCAAAGCTTGTGACTAAGCCGAGC
GTTAAATAAAATGTGAACCAGAAGAAAAAGCGTTGATTATTGTGTCCAAT
GCAAGTGCCCGTGAATATACAGTGGTGGTCCCGTCTCAAAATGCAGGTGT
TGCACAAAACGCAGTGCCAGGATCGTGGCGATCTCAGCTTTTTACACGAT
TCGCAATAGTGCCACAGGGGCTCATCCTCTGGATTCGGGCATCGGGAGTC
CTTGGACAAGGTGTTTACCGATGAGCTAGTCATATAGCAGGCCAGCATGT
TACCAAGTATGTTGTGCGTTATGAAGGTGACCAATATCCAGTAGAGCTTG
TAAGCAATGTCGCCAAACACTTTGGGCGCAATGTAAAACATCTGCAGTGA
GAAGAAGAAAGCTGTGCTGCACAGGACGAAAACTATCGAAAGTGGATGCA
CTATCCTCACAAAGTTCTTCGGGTAGCGATTGGC
BO05033.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-PA | 852 | CG17195-RA | 34..849 | 834..19 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-RA | 923 | CG17195-RA | 51..866 | 834..19 | 4080 | 100 | Minus |
CG17196-RC | 881 | CG17196-RC | 257..426 | 573..404 | 325 | 80.1 | Minus |
CG17196-RB | 875 | CG17196-RB | 251..420 | 573..404 | 325 | 80.1 | Minus |
CG17196-RC | 881 | CG17196-RC | 587..759 | 222..50 | 295 | 78.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25776333..25777148 | 19..834 | 4080 | 100 | Plus |
3R | 32079331 | 3R | 25775743..25775912 | 404..573 | 310 | 78.8 | Plus |
3R | 32079331 | 3R | 25775410..25775582 | 50..222 | 295 | 78 | Plus |
3R | 32079331 | 3R | 25774821..25774936 | 413..528 | 220 | 79.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:38:32 has no hits.
BO05033.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:44 Download gff for
BO05033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-PA | 34..852 | 15..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:37 Download gff for
BO05033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-PA | 34..852 | 15..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:44:04 Download gff for
BO05033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 51..872 | 11..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:04:34 Download gff for
BO05033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 51..872 | 11..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:04:34 Download gff for
BO05033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25776327..25777148 | 11..834 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:44:04 Download gff for
BO05033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21602049..21602870 | 11..834 | 99 | | Plus |
BO05033.5prime Sequence
413 bp (412 high quality bases) assembled on 2005-12-02
> BO05033.5prime
GAAGTTATCAGTCGACATGTGCTACGTGAATAGATTTTGCCATTACTTTG
CCAATCGCTACCCGAAGAACTTTGTGAGGATAGTGCATCCACTTTCGATA
GTTTTCGTCCTGTGCAGCACAGCTTTCTTCTTCTCACTGCAGATGTTTTA
CATTGCGCCCAAAGTGTTTGGCGACATTGCTTACAAGCTCTACTGGATAT
TGGTCACCTTCATAACGCACAACATACTTGGTAACATGCTGGCCTGCTAT
ATGACTAGCTCATCGGTAAACACCTTGTCCAAGGACTCCCGATGCCCGAA
TCCAGAGGATGAGCCCCTGTGGCACTATTGCGAATCGTGTAAAAAGCTGA
GATCGCCACGATCCTGGCACTGCGTTTTGTGCAACACCTGCATTTTGAGA
CGGGACCACCACT
BO05033.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-PA | 852 | CG17195-RA | 1..397 | 17..413 | 1985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-RA | 923 | CG17195-RA | 18..414 | 17..413 | 1985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25776785..25777181 | 413..17 | 1985 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:27:25 has no hits.
BO05033.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:45 Download gff for
BO05033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-PA | 1..397 | 17..413 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:38 Download gff for
BO05033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-PA | 1..397 | 17..413 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:26 Download gff for
BO05033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..414 | 17..413 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:49:46 Download gff for
BO05033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..414 | 17..413 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:49:46 Download gff for
BO05033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25776785..25777181 | 17..413 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:26 Download gff for
BO05033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21602507..21602903 | 17..413 | 100 | | Minus |
BO05033.complete Sequence
883 bp (883 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629949
> BO05033.complete
GAAGTTATCAGTCGACATGTGCTACGTGAATAGATTTTGCCATTACTTTG
CCAATCGCTACCCGAAGAACTTTGTGAGGATAGTGCATCCACTTTCGATA
GTTTTCGTCCTGTGCAGCACAGCTTTCTTCTTCTCACTGCAGATGTTTTA
CATTGCGCCCAAAGTGTTTGGCGACATTGCTTACAAGCTCTACTGGATAT
TGGTCACCTTCATAACGCACAACATACTTGGTAACATGCTGGCCTGCTAT
ATGACTAGCTCATCGGTAAACACCTTGTCCAAGGACTCCCGATGCCCGAA
TCCAGAGGATGAGCCCCTGTGGCACTATTGCGAATCGTGTAAAAAGCTGA
GATCGCCACGATCCTGGCACTGCGTTTTGTGCAACACCTGCATTTTGAGA
CGGGACCACCACTGTATATTCACGGGCACTTGCATTGGACACAATAATCA
ACGCTTTTTCTTCTGGTTCACATTTTATTTAACGCTCGGCTTAGTCACAA
GCTTTGCAACATTTTGTATGTTTATCCTGCAGAATGGCGGTAACTTCATG
AGTCTCTCGTCTGTGATTTTTAATTTAATAACTAGGACTTTTTTCCAAAA
TTATACTGGCAATACTTTTGAGACCATTGCCTTCCTCTTGAATATAAGCG
CCAGCTATATGCCTGCCTTTATGTTGGCATATCAAATGCAGATTTTAAGC
CAAAACTCTACCTACTATAATATTTTTGATTGCACCTACGATCTGGGTTT
CCGAAAGAACTGCCAGACAATAATGGGCCAACGAGGACTTTGGACTTTTA
TATCGCCCTTGCTGAAGAGTCCTTTGCCCCATGACGGTGCACATTGGCAG
ATGAAGCAGTCTCACGCAAGCTTTCTAGACCAT
BO05033.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-RA | 852 | CG17195-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
CG17196-RC | 762 | CG17196-PC | 226..395 | 311..480 | 310 | 78.8 | Plus |
CG17196-RB | 756 | CG17196-PB | 220..389 | 311..480 | 310 | 78.8 | Plus |
CG17196-RC | 762 | CG17196-PC | 556..728 | 662..834 | 295 | 78 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-RA | 923 | CG17195-RA | 18..866 | 17..865 | 4245 | 100 | Plus |
CG17196-RC | 881 | CG17196-RC | 257..426 | 311..480 | 310 | 78.8 | Plus |
CG17196-RB | 875 | CG17196-RB | 251..420 | 311..480 | 310 | 78.8 | Plus |
CG17196-RC | 881 | CG17196-RC | 587..759 | 662..834 | 295 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25776333..25777181 | 865..17 | 4245 | 100 | Minus |
3R | 32079331 | 3R | 25775743..25775912 | 480..311 | 310 | 78.8 | Minus |
3R | 32079331 | 3R | 25775410..25775582 | 834..662 | 295 | 78 | Minus |
3R | 32079331 | 3R | 25774821..25774936 | 471..356 | 220 | 79.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:35:15 has no hits.
BO05033.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:41 Download gff for
BO05033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 1..852 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:47 Download gff for
BO05033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..872 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:41 Download gff for
BO05033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..866 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:41 Download gff for
BO05033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..872 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:37 Download gff for
BO05033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..866 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:37 Download gff for
BO05033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25776331..25777181 | 17..867 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:41 Download gff for
BO05033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21602053..21602903 | 17..867 | 99 | | Minus |
BO05033.pep Sequence
Translation from 16 to 883
> BO05033.pep
MCYVNRFCHYFANRYPKNFVRIVHPLSIVFVLCSTAFFFSLQMFYIAPKV
FGDIAYKLYWILVTFITHNILGNMLACYMTSSSVNTLSKDSRCPNPEDEP
LWHYCESCKKLRSPRSWHCVLCNTCILRRDHHCIFTGTCIGHNNQRFFFW
FTFYLTLGLVTSFATFCMFILQNGGNFMSLSSVIFNLITRTFFQNYTGNT
FETIAFLLNISASYMPAFMLAYQMQILSQNSTYYNIFDCTYDLGFRKNCQ
TIMGQRGLWTFISPLLKSPLPHDGAHWQMKQSHASFLDH
BO05033.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-PA | 283 | CG17195-PA | 1..283 | 1..283 | 1573 | 100 | Plus |
CG17196-PA | 276 | CG17196-PA | 1..274 | 1..281 | 825 | 54.4 | Plus |
CG17197-PB | 290 | CG17197-PB | 1..275 | 1..281 | 722 | 46.6 | Plus |
CG17196-PB | 251 | CG17196-PB | 1..249 | 1..281 | 715 | 49.8 | Plus |
CG17196-PC | 253 | CG17196-PC | 1..251 | 1..281 | 714 | 49.5 | Plus |