Clone BO05038 Report

Search the DGRC for BO05038

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG17328-RA
Protein status:BO05038.pep: validated full length
Sequenced Size:1273

Clone Sequence Records

BO05038.3prime Sequence

889 bp (800 high quality bases) assembled on 2005-12-02

> BO05038.3prime
ATGGTCTAGAAAGCTTGCGTAATGTAGTCTTTGTGCCGCCGTGTGGTGCA
GCATAGTGTAACGCCCTTCACTTGGCGTTGGCGGTGGAGGCGGCGGCGGT
GCCAACATGTGAGCCATTGCCGCCATTCCCATTTGTGTGGCGGGATTCGG
GGGGCCGAGATGATGCAGTGCATCGTGATGGTAGTGATGCGACATAGGTG
GTGCAGGAGGCAACGGCAAATTCAGTAGATTATTATTCGCCGCATGTGTG
CGAAAATGTAGACTTAGGCTGTCCGCCGTATCAAATGCCTTGTCGCAATC
CGGACACTTGAAGTGGGCGTGATCGAGGGTGTCCAGACCCACGGGATCCG
TGTCTATAGCCTCATCATCATCATCGTCCACTATATCATGGTTTGTACTG
GACTCCAGAGGATGAAGCTTCAATTTATGAGTCCGCATATCTCTTCGCCT
GCTGAAAGCCTTGCCGCAGACATCGCAGTGATGGTTTTTGATGCCCGTAT
GGGTTATCATGTGCTTGGAGAGATCACCGGCGGTGTAGAAACCTTTCTGA
CATAGCGAGCATACCTGATCCCGCACTCCTAAATGAATCTTCTGGTGCGC
CTGGAAATTGCCCAACGCGGAAAACTGCTTGGAGCAGATCTCACACTGAA
AAGGCTTGTCGCCCGTGTGCGTTCTTTCGTGGACTTTAAGATTGTACTTT
TGTGCGAATCTCTGGATACAAAAGCTGCATTGGTAGGGTTTCTCGCCGGT
ATGTGTTCTTATATGCTGTGTTAATTGGGCAATGCACTTAAAGCTTTTGT
GGCACTCGTAGCAGGTGTGGGGCATCTTTGGCACAGGTTTGGGCCCCCGT
TTTTTGTGCTCTTCTGGCGGCTTCCTTTGATAGCGCGAC

BO05038.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17328-PA 1242 CG17328-RA 369..1238 889..20 4050 98.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17328-RB 1346 CG17328-RB 316..1185 889..20 4170 98.6 Minus
CG17328-RA 1496 CG17328-RA 466..1335 889..20 4170 98.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16300735..16301604 889..20 4170 98.6 Minus
Blast to na_te.dros performed on 2015-02-12 10:13:44 has no hits.

BO05038.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:51 Download gff for BO05038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17328-PA 369..1242 18..889 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:46 Download gff for BO05038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17328-PA 369..1242 18..889 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:54:35 Download gff for BO05038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 466..1335 20..889 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:15 Download gff for BO05038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 466..1335 20..889 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:15 Download gff for BO05038.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16300735..16301604 20..889 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:54:35 Download gff for BO05038.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16300735..16301604 20..889 98   Minus

BO05038.5prime Sequence

857 bp (724 high quality bases) assembled on 2005-12-02

> BO05038.5prime
GAAGTTATCAGTCGACATGGACTATAATATCCACAAAATATGCAGAGTTT
GCCTGGAGGAACTACATCCTGTAACTTCGATATATAGTACAGACTTTGCT
ATGATGCCCTCCGTAATGTTGATGCAATGCGCTAAAATAAGAGTTTTTAA
AACCGATGGCCTACCTTCGGTGATCTGCAACAACTGTATTTACCGGCTGG
GGGTGGCCTTCCACTTCAAGCAGGAATGCGAAAACAGTGATCTCCGACTG
CGACAATATCTGGGCATTCTGGAATCCTGGCGCCAGGATGCGGCCACCAA
TACGGACTTTGTGGAGAAGCCGTTGCTTCCGCAGCGCGATAGCGATGAAG
AGGAACCCGTGGATGCCAAAGTGAGCAAGAGGCGGTCGCGCTATCAAAGG
AAGCCGCCAGAAGAGCACAAAAAACGGGGGCCCAAACCTGTGCCAAAGAT
GCCCCACACCTGCTACGAGTGCCACAAAAGCTTTAAGTGCATTGCCCAAT
TAACACAGCATATAAGAACACATACCGGCGAGAAACCCTACCAATGCAGC
TTTTGTATCCAGAGATTCGCACAAAAGTACAATCTTAAAGTCCACGAAAG
AACGCACACGGGCGACAAGCCTTTTCAGTGTGAGATCTGCTCCAAGCAGT
TTTCCGCGTTGGGCAATTTCCAGGCGCACCAGAAGATTCATTTAGGAGTG
CGGGATCAGGTATGCTCGCTATGTCAGAAAGGTTTCTACACCGCCGGTGA
TCTCTCCAAGCACATGATAACCCATACGGGCATCAAAAACCATCACTGCG
ATGTCTGCGGCAAGGCTTTCAGCAGGCGAAGAGATATGCGGACTCATAAA
TTGAAGC

BO05038.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG17328-PA 1242 CG17328-RA 1..841 17..857 4030 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17328-RA 1496 CG17328-RA 96..938 15..857 4110 99.2 Plus
CG17328-RB 1346 CG17328-RB 64..788 133..857 3475 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16300493..16301207 143..857 3470 99 Plus
2L 23513712 2L 16300309..16300438 15..144 650 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:34:24 has no hits.

BO05038.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:52 Download gff for BO05038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17328-PA 1..841 17..857 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:48 Download gff for BO05038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17328-PA 1..841 17..857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:59 Download gff for BO05038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 96..938 15..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:29 Download gff for BO05038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 96..938 15..857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:29 Download gff for BO05038.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16300309..16300436 15..142 100 -> Plus
2L 16300493..16301207 143..857 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:59 Download gff for BO05038.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16300309..16300436 15..142 100 -> Plus
arm_2L 16300493..16301207 143..857 99   Plus

BO05038.complete Sequence

1273 bp (1273 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629950

> BO05038.complete
GAAGTTATCAGTCGACATGGACTATAATATCCACAAAATATGCAGAGTTT
GCCTGGAGGAACTACATCCTGTAACTTCGATATATAGTACAGACTTTGCT
ATGATGCCCTCCGTAATGTTGATGCAATGCGCTAAAATAAGAGTTTTTAA
AACCGATGGCCTACCTTCGGTGATCTGCAACAACTGTATTTACCGGCTGG
GGGTGGCCTTCCACTTCAAGCAGGAATGCGAAAACAGTGATCTCCGACTG
CGACAATATCTGGGCATTCTGGAATCCTGGCGCCAGGATGCGGCCACCAA
TACGGACTTTGTGGAGAAGCCGTTGCTTCCGCAGCGCGATAGCGATGAAG
AGGAACCCGTGGATGCCAAAGTGAGCAAGAGGCGGTCGCGCTATCAAAGG
AAGCCGCCAGAAGAGCACAAAAAACGGGGGCCCAAACCTGTGCCAAAGAT
GCCCCACACCTGCTACGAGTGCCACAAAAGCTTTAAGTGCATTGCCCAAT
TAACACAGCATATAAGAACACATACCGGCGAGAAACCCTACCAATGCAGC
TTTTGTATCCAGAGATTCGCACAAAAGTACAATCTTAAAGTCCACGAAAG
AACGCACACGGGCGACAAGCCTTTTCAGTGTGAGATCTGCTCCAAGCAGT
TTTCCGCGTTGGGCAATTTCCAGGCGCACCAGAAGATTCATTTAGGAGTG
CGGGATCAGGTATGCTCGCTATGTCAGAAAGGTTTCTACACCGCCGGTGA
TCTCTCCAAGCACATGATAACCCATACGGGCATCAAAAACCATCACTGCG
ATGTCTGCGGCAAGGCTTTCAGCAGGCGAAGAGATATGCGGACTCATAAA
TTGAAGCTTCATCCTCTGGAGTCCAGTACAAACCATGATATAGTGGACGA
TGATGATGATGAGGCTATAGACACGGATCCCGTGGGTCTGGACACCCTCG
ATCACGCCCACTTCAAGTGTCCGGATTGCGACAAGGCATTTGATACGGCG
GACAGCCTAAGTCTACATTTTCGCACACATGCGGCGAATAATAATCTACT
GAATTTGCCGTTGCCTCCTGCACCACCTATGTCGCATCACTACCATCACG
ATGCACTGCATCATCTCGGCCCCCCGAATCCCGCCACACAAATGGGAATG
GCGGCAATGGCTCACATGTTGGCACCGCCGCCGCCTCCACCGCCAACGCC
AAGTGAAGGGCGTTACACTATGCTGCACCACACGGCGGCACAAAGACTAC
ATTACGCAAGCTTTCTAGACCAT

BO05038.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17328-RA 1242 CG17328-PA 1..1238 17..1254 6010 99 Plus
CG17328-RB 1149 CG17328-PB 24..1145 133..1254 5385 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17328-RA 1496 CG17328-RA 96..1335 15..1254 6020 99 Plus
CG17328-RB 1346 CG17328-RB 64..1185 133..1254 5385 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16300493..16301604 143..1254 5380 98.9 Plus
2L 23513712 2L 16300309..16300438 15..144 650 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:50:33 has no hits.

BO05038.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:42 Download gff for BO05038.complete
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 1..1242 17..1256 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:49 Download gff for BO05038.complete
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 57..1296 15..1254 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:05 Download gff for BO05038.complete
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 98..1335 17..1257 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:42 Download gff for BO05038.complete
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 57..1296 15..1254 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:23 Download gff for BO05038.complete
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 98..1335 17..1257 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:23 Download gff for BO05038.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16300311..16300436 17..142 100 -> Plus
2L 16300493..16301604 143..1257 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:05 Download gff for BO05038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16300311..16300436 17..142 100 -> Plus
arm_2L 16300493..16301604 143..1257 98   Plus

BO05038.pep Sequence

Translation from 16 to 1273

> BO05038.pep
MDYNIHKICRVCLEELHPVTSIYSTDFAMMPSVMLMQCAKIRVFKTDGLP
SVICNNCIYRLGVAFHFKQECENSDLRLRQYLGILESWRQDAATNTDFVE
KPLLPQRDSDEEEPVDAKVSKRRSRYQRKPPEEHKKRGPKPVPKMPHTCY
ECHKSFKCIAQLTQHIRTHTGEKPYQCSFCIQRFAQKYNLKVHERTHTGD
KPFQCEICSKQFSALGNFQAHQKIHLGVRDQVCSLCQKGFYTAGDLSKHM
ITHTGIKNHHCDVCGKAFSRRRDMRTHKLKLHPLESSTNHDIVDDDDDEA
IDTDPVGLDTLDHAHFKCPDCDKAFDTADSLSLHFRTHAANNNLLNLPLP
PAPPMSHHYHHDALHHLGPPNPATQMGMAAMAHMLAPPPPPPPTPSEGRY
TMLHHTAAQRLHYASFLDH

BO05038.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17328-PA 413 CG17328-PA 1..413 1..413 2297 100 Plus
CG17328-PB 382 CG17328-PB 9..382 40..413 2078 99.5 Plus
Kr-h1-PA 791 CG45074-PA 216..410 146..339 359 36.2 Plus
Kr-h1-PB 845 CG45074-PB 270..464 146..339 359 36.2 Plus
CG15436-PA 346 CG15436-PA 3..318 7..340 344 27.7 Plus
Kr-h1-PA 791 CG45074-PA 213..353 171..338 271 34.7 Plus
Kr-h1-PB 845 CG45074-PB 267..407 171..338 271 34.7 Plus