Clone Sequence Records
BO05038.3prime Sequence
889 bp (800 high quality bases) assembled on 2005-12-02
> BO05038.3prime
ATGGTCTAGAAAGCTTGCGTAATGTAGTCTTTGTGCCGCCGTGTGGTGCA
GCATAGTGTAACGCCCTTCACTTGGCGTTGGCGGTGGAGGCGGCGGCGGT
GCCAACATGTGAGCCATTGCCGCCATTCCCATTTGTGTGGCGGGATTCGG
GGGGCCGAGATGATGCAGTGCATCGTGATGGTAGTGATGCGACATAGGTG
GTGCAGGAGGCAACGGCAAATTCAGTAGATTATTATTCGCCGCATGTGTG
CGAAAATGTAGACTTAGGCTGTCCGCCGTATCAAATGCCTTGTCGCAATC
CGGACACTTGAAGTGGGCGTGATCGAGGGTGTCCAGACCCACGGGATCCG
TGTCTATAGCCTCATCATCATCATCGTCCACTATATCATGGTTTGTACTG
GACTCCAGAGGATGAAGCTTCAATTTATGAGTCCGCATATCTCTTCGCCT
GCTGAAAGCCTTGCCGCAGACATCGCAGTGATGGTTTTTGATGCCCGTAT
GGGTTATCATGTGCTTGGAGAGATCACCGGCGGTGTAGAAACCTTTCTGA
CATAGCGAGCATACCTGATCCCGCACTCCTAAATGAATCTTCTGGTGCGC
CTGGAAATTGCCCAACGCGGAAAACTGCTTGGAGCAGATCTCACACTGAA
AAGGCTTGTCGCCCGTGTGCGTTCTTTCGTGGACTTTAAGATTGTACTTT
TGTGCGAATCTCTGGATACAAAAGCTGCATTGGTAGGGTTTCTCGCCGGT
ATGTGTTCTTATATGCTGTGTTAATTGGGCAATGCACTTAAAGCTTTTGT
GGCACTCGTAGCAGGTGTGGGGCATCTTTGGCACAGGTTTGGGCCCCCGT
TTTTTGTGCTCTTCTGGCGGCTTCCTTTGATAGCGCGAC
BO05038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17328-PA | 1242 | CG17328-RA | 369..1238 | 889..20 | 4050 | 98.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17328-RB | 1346 | CG17328-RB | 316..1185 | 889..20 | 4170 | 98.6 | Minus |
CG17328-RA | 1496 | CG17328-RA | 466..1335 | 889..20 | 4170 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16300735..16301604 | 889..20 | 4170 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:13:44 has no hits.
BO05038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:51 Download gff for
BO05038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-PA | 369..1242 | 18..889 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:46 Download gff for
BO05038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-PA | 369..1242 | 18..889 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:54:35 Download gff for
BO05038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 466..1335 | 20..889 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:15 Download gff for
BO05038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 466..1335 | 20..889 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:15 Download gff for
BO05038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16300735..16301604 | 20..889 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:54:35 Download gff for
BO05038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16300735..16301604 | 20..889 | 98 | | Minus |
BO05038.5prime Sequence
857 bp (724 high quality bases) assembled on 2005-12-02
> BO05038.5prime
GAAGTTATCAGTCGACATGGACTATAATATCCACAAAATATGCAGAGTTT
GCCTGGAGGAACTACATCCTGTAACTTCGATATATAGTACAGACTTTGCT
ATGATGCCCTCCGTAATGTTGATGCAATGCGCTAAAATAAGAGTTTTTAA
AACCGATGGCCTACCTTCGGTGATCTGCAACAACTGTATTTACCGGCTGG
GGGTGGCCTTCCACTTCAAGCAGGAATGCGAAAACAGTGATCTCCGACTG
CGACAATATCTGGGCATTCTGGAATCCTGGCGCCAGGATGCGGCCACCAA
TACGGACTTTGTGGAGAAGCCGTTGCTTCCGCAGCGCGATAGCGATGAAG
AGGAACCCGTGGATGCCAAAGTGAGCAAGAGGCGGTCGCGCTATCAAAGG
AAGCCGCCAGAAGAGCACAAAAAACGGGGGCCCAAACCTGTGCCAAAGAT
GCCCCACACCTGCTACGAGTGCCACAAAAGCTTTAAGTGCATTGCCCAAT
TAACACAGCATATAAGAACACATACCGGCGAGAAACCCTACCAATGCAGC
TTTTGTATCCAGAGATTCGCACAAAAGTACAATCTTAAAGTCCACGAAAG
AACGCACACGGGCGACAAGCCTTTTCAGTGTGAGATCTGCTCCAAGCAGT
TTTCCGCGTTGGGCAATTTCCAGGCGCACCAGAAGATTCATTTAGGAGTG
CGGGATCAGGTATGCTCGCTATGTCAGAAAGGTTTCTACACCGCCGGTGA
TCTCTCCAAGCACATGATAACCCATACGGGCATCAAAAACCATCACTGCG
ATGTCTGCGGCAAGGCTTTCAGCAGGCGAAGAGATATGCGGACTCATAAA
TTGAAGC
BO05038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17328-PA | 1242 | CG17328-RA | 1..841 | 17..857 | 4030 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:34:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17328-RA | 1496 | CG17328-RA | 96..938 | 15..857 | 4110 | 99.2 | Plus |
CG17328-RB | 1346 | CG17328-RB | 64..788 | 133..857 | 3475 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16300493..16301207 | 143..857 | 3470 | 99 | Plus |
2L | 23513712 | 2L | 16300309..16300438 | 15..144 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:34:24 has no hits.
BO05038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:52 Download gff for
BO05038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:48 Download gff for
BO05038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:59 Download gff for
BO05038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 96..938 | 15..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:29 Download gff for
BO05038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 96..938 | 15..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:29 Download gff for
BO05038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16300309..16300436 | 15..142 | 100 | -> | Plus |
2L | 16300493..16301207 | 143..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:59 Download gff for
BO05038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16300309..16300436 | 15..142 | 100 | -> | Plus |
arm_2L | 16300493..16301207 | 143..857 | 99 | | Plus |
BO05038.complete Sequence
1273 bp (1273 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629950
> BO05038.complete
GAAGTTATCAGTCGACATGGACTATAATATCCACAAAATATGCAGAGTTT
GCCTGGAGGAACTACATCCTGTAACTTCGATATATAGTACAGACTTTGCT
ATGATGCCCTCCGTAATGTTGATGCAATGCGCTAAAATAAGAGTTTTTAA
AACCGATGGCCTACCTTCGGTGATCTGCAACAACTGTATTTACCGGCTGG
GGGTGGCCTTCCACTTCAAGCAGGAATGCGAAAACAGTGATCTCCGACTG
CGACAATATCTGGGCATTCTGGAATCCTGGCGCCAGGATGCGGCCACCAA
TACGGACTTTGTGGAGAAGCCGTTGCTTCCGCAGCGCGATAGCGATGAAG
AGGAACCCGTGGATGCCAAAGTGAGCAAGAGGCGGTCGCGCTATCAAAGG
AAGCCGCCAGAAGAGCACAAAAAACGGGGGCCCAAACCTGTGCCAAAGAT
GCCCCACACCTGCTACGAGTGCCACAAAAGCTTTAAGTGCATTGCCCAAT
TAACACAGCATATAAGAACACATACCGGCGAGAAACCCTACCAATGCAGC
TTTTGTATCCAGAGATTCGCACAAAAGTACAATCTTAAAGTCCACGAAAG
AACGCACACGGGCGACAAGCCTTTTCAGTGTGAGATCTGCTCCAAGCAGT
TTTCCGCGTTGGGCAATTTCCAGGCGCACCAGAAGATTCATTTAGGAGTG
CGGGATCAGGTATGCTCGCTATGTCAGAAAGGTTTCTACACCGCCGGTGA
TCTCTCCAAGCACATGATAACCCATACGGGCATCAAAAACCATCACTGCG
ATGTCTGCGGCAAGGCTTTCAGCAGGCGAAGAGATATGCGGACTCATAAA
TTGAAGCTTCATCCTCTGGAGTCCAGTACAAACCATGATATAGTGGACGA
TGATGATGATGAGGCTATAGACACGGATCCCGTGGGTCTGGACACCCTCG
ATCACGCCCACTTCAAGTGTCCGGATTGCGACAAGGCATTTGATACGGCG
GACAGCCTAAGTCTACATTTTCGCACACATGCGGCGAATAATAATCTACT
GAATTTGCCGTTGCCTCCTGCACCACCTATGTCGCATCACTACCATCACG
ATGCACTGCATCATCTCGGCCCCCCGAATCCCGCCACACAAATGGGAATG
GCGGCAATGGCTCACATGTTGGCACCGCCGCCGCCTCCACCGCCAACGCC
AAGTGAAGGGCGTTACACTATGCTGCACCACACGGCGGCACAAAGACTAC
ATTACGCAAGCTTTCTAGACCAT
BO05038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17328-RA | 1242 | CG17328-PA | 1..1238 | 17..1254 | 6010 | 99 | Plus |
CG17328-RB | 1149 | CG17328-PB | 24..1145 | 133..1254 | 5385 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17328-RA | 1496 | CG17328-RA | 96..1335 | 15..1254 | 6020 | 99 | Plus |
CG17328-RB | 1346 | CG17328-RB | 64..1185 | 133..1254 | 5385 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16300493..16301604 | 143..1254 | 5380 | 98.9 | Plus |
2L | 23513712 | 2L | 16300309..16300438 | 15..144 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:50:33 has no hits.
BO05038.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:42 Download gff for
BO05038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 1..1242 | 17..1256 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:49 Download gff for
BO05038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 57..1296 | 15..1254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:05 Download gff for
BO05038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 98..1335 | 17..1257 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:42 Download gff for
BO05038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 57..1296 | 15..1254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:23 Download gff for
BO05038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 98..1335 | 17..1257 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:23 Download gff for
BO05038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16300311..16300436 | 17..142 | 100 | -> | Plus |
2L | 16300493..16301604 | 143..1257 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:05 Download gff for
BO05038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16300311..16300436 | 17..142 | 100 | -> | Plus |
arm_2L | 16300493..16301604 | 143..1257 | 98 | | Plus |
BO05038.pep Sequence
Translation from 16 to 1273
> BO05038.pep
MDYNIHKICRVCLEELHPVTSIYSTDFAMMPSVMLMQCAKIRVFKTDGLP
SVICNNCIYRLGVAFHFKQECENSDLRLRQYLGILESWRQDAATNTDFVE
KPLLPQRDSDEEEPVDAKVSKRRSRYQRKPPEEHKKRGPKPVPKMPHTCY
ECHKSFKCIAQLTQHIRTHTGEKPYQCSFCIQRFAQKYNLKVHERTHTGD
KPFQCEICSKQFSALGNFQAHQKIHLGVRDQVCSLCQKGFYTAGDLSKHM
ITHTGIKNHHCDVCGKAFSRRRDMRTHKLKLHPLESSTNHDIVDDDDDEA
IDTDPVGLDTLDHAHFKCPDCDKAFDTADSLSLHFRTHAANNNLLNLPLP
PAPPMSHHYHHDALHHLGPPNPATQMGMAAMAHMLAPPPPPPPTPSEGRY
TMLHHTAAQRLHYASFLDH
BO05038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17328-PA | 413 | CG17328-PA | 1..413 | 1..413 | 2297 | 100 | Plus |
CG17328-PB | 382 | CG17328-PB | 9..382 | 40..413 | 2078 | 99.5 | Plus |
Kr-h1-PA | 791 | CG45074-PA | 216..410 | 146..339 | 359 | 36.2 | Plus |
Kr-h1-PB | 845 | CG45074-PB | 270..464 | 146..339 | 359 | 36.2 | Plus |
CG15436-PA | 346 | CG15436-PA | 3..318 | 7..340 | 344 | 27.7 | Plus |
Kr-h1-PA | 791 | CG45074-PA | 213..353 | 171..338 | 271 | 34.7 | Plus |
Kr-h1-PB | 845 | CG45074-PB | 267..407 | 171..338 | 271 | 34.7 | Plus |