Clone Sequence Records
BO05039.3prime Sequence
866 bp (811 high quality bases) assembled on 2005-12-02
> BO05039.3prime
ATGGTCTAGAAAGCTTGCATGTGTAGTCTCAATTATGATTTCGTGCGTAT
CCAGATCGGGCACGGCAAACTTCATGGGCAAATAGTCGTCTGGATGCATG
TGGGACATCTGGTTAACCTCCAGCTGGGCCCTTTCGTGGTCCTCATGGCA
CTTGGCTTCGTGCTTCTCATAGTCAGCGAAGGTATCAAAGATGGCCCGAC
ACACCATGCATTCGAAAAAGCTTGGTTTCTGCTCCGACTCAAGCCGTTCC
CTGGCCAGGGCGGCAGCCGCCTGGATAGAGGCGGGCACGTCCACATCGAC
GCCCTCCTTTATGTGCGACTGCAAGTGGCGCTTAAAGTTTGACAGCTGGG
TGAAGCCCTTCTCGCAGTAATTACACTGGTAGGGCTTGGCGTTGAGGTGG
CCAAGCTTGTGTTTCTTGAGGTTGACCAGCTGGGAAAAGTACCTGCCGCA
TCGCTGGCAGCGGAACGGCTTCTCGCCAGTGTGTGTCATCTTGTGGCGCT
TCATGTTGCTCTGCTGGGTGAAGGACTTGTTGCAGAAGTTACAGGTGAAT
GGCCGCTCCCCGCTGTGCACCGCATAGTGGCGCTGCAGGTTCACAGCCTG
GGCGAAGGCCTTCGAGCAAATGTTACACACGAAGGGCCGCACATCGTTGT
GCACCTTCATGTGACGATCCAGGTTCCCCGAATTGCAGAAGCTCTTCGCG
CACAGCTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCTTGTCG
ATGCAACGTCTGATCCCGCTTGCTTCTGAAGGTTCGGTCGCAGCGCTTGC
AGCTGAACTGATTGGCCACCGTCTCGTCGAATTCTACCTCCATGCCCGCC
ATGTCGACTGATAACT
BO05039.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17385-PA | 837 | CG17385-RA | 1..834 | 852..19 | 4095 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17385-RB | 1853 | CG17385-RB | 158..995 | 856..19 | 4130 | 99.5 | Minus |
| CG17385-RA | 1192 | CG17385-RA | 158..995 | 856..19 | 4130 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14410725..14411284 | 224..783 | 2755 | 99.5 | Plus |
| 2R | 25286936 | 2R | 14410214..14410418 | 19..223 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 14411343..14411415 | 784..856 | 350 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:33:43 has no hits.
BO05039.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:52 Download gff for
BO05039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17385-PA | 1..837 | 18..852 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:49 Download gff for
BO05039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17385-PA | 1..837 | 18..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:14 Download gff for
BO05039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17385-RA | 158..995 | 19..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:23 Download gff for
BO05039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17385-RA | 158..995 | 19..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:23 Download gff for
BO05039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14410214..14410418 | 19..223 | 100 | <- | Plus |
| 2R | 14410725..14411284 | 224..783 | 99 | <- | Plus |
| 2R | 14411343..14411415 | 784..856 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:14 Download gff for
BO05039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10297719..10297923 | 19..223 | 100 | <- | Plus |
| arm_2R | 10298230..10298789 | 224..783 | 99 | <- | Plus |
| arm_2R | 10298848..10298920 | 784..856 | 98 | | Plus |
BO05039.5prime Sequence
866 bp (854 high quality bases) assembled on 2005-12-02
> BO05039.5prime
GAAGTTATCAGTCGACATGGCGGGCATGGAGGTAGAATTCGACGAGACGG
TGGCCAATCAGTTCAGCTGCAAGCGCTGCGACCGAACCTTCAGAAGCAAG
CGGGATCAGACGTTGCATCGACAAGAGGTGCACAACCACAACAAGACCAC
CTACGAGTGCAAGCTGTGCGCGAAGAGCTTCTGCAATTCGGGGAACCTGG
ATCGTCACATGAAGGTGCACAACGATGTGCGGCCCTTCGTGTGTAACATT
TGCTCGAAGGCCTTCGCCCAGGCTGTGAACCTGCAGCGCCACTATGCGGT
GCACAGCGGGGAGCGGCCATTCACCTGTAACTTCTGCAACAAGTCCTTCA
CCCAGCAGAGCAACATGAAGCGCCACAAGATGACACACACTGGCGAGAAG
CCGTTCCGCTGCCAGCGATGCGGCAGGTACTTTTCCCAGCTGGTCAACCT
CAAGAAACACAAGCTTGGCCACCTCAACGCCAAGCCCTACCAGTGTAATT
ACTGCGAGAAGGGCTTCACCCAGCTGTCAAACTTTAAGCGCCACTTGCAG
TCGCACATAAAGGAGGGCGTCGATGTGGACGTGCCCGCCTCTATCCAGGC
GGCTGCCGCCCTGGCCAGGGAACGGCTTGAGTCGGAGCAGAAACCAAGCT
TTTTCGAATGCATGGTGTGTCGGGCCATCTTTGATACCTTCGCTGACTAT
GAGAAGCACGAAGCCAAGTGCCATGAGGACCACGAAAGGGCCCAGCTGGA
GGTTAACCAGATGTCCCACATGCATCCAGACGACTATTTGCCCATGAAGT
TTGCCGTGCCCGATCTGGATACGCACGAAATCATAATTGAGACTACACAT
GCAAGCTTTCTAGACC
BO05039.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17385-PA | 837 | CG17385-RA | 1..834 | 17..850 | 4095 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17385-RB | 1853 | CG17385-RB | 158..995 | 13..850 | 4130 | 99.5 | Plus |
| CG17385-RA | 1192 | CG17385-RA | 158..995 | 13..850 | 4130 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:17:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14410725..14411284 | 645..86 | 2755 | 99.5 | Minus |
| 2R | 25286936 | 2R | 14410214..14410418 | 850..646 | 1025 | 100 | Minus |
| 2R | 25286936 | 2R | 14411343..14411415 | 85..13 | 350 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:17:58 has no hits.
BO05039.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:53 Download gff for
BO05039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17385-PA | 1..837 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:50 Download gff for
BO05039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17385-PA | 1..837 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:57 Download gff for
BO05039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17385-RA | 158..995 | 13..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:47:04 Download gff for
BO05039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17385-RA | 158..995 | 13..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:47:04 Download gff for
BO05039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14410214..14410418 | 646..850 | 100 | <- | Minus |
| 2R | 14410725..14411284 | 86..645 | 99 | <- | Minus |
| 2R | 14411343..14411415 | 13..85 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:57 Download gff for
BO05039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10297719..10297923 | 646..850 | 100 | <- | Minus |
| arm_2R | 10298230..10298789 | 86..645 | 99 | <- | Minus |
| arm_2R | 10298848..10298920 | 13..85 | 98 | | Minus |
BO05039.complete Sequence
868 bp (868 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629951
> BO05039.complete
GAAGTTATCAGTCGACATGGCGGGCATGGAGGTAGAATTCGACGAGACGG
TGGCCAATCAGTTCAGCTGCAAGCGCTGCGACCGAACCTTCAGAAGCAAG
CGGGATCAGACGTTGCATCGACAAGAGGTGCACAACCACAACAAGACCAC
CTACGAGTGCAAGCTGTGCGCGAAGAGCTTCTGCAATTCGGGGAACCTGG
ATCGTCACATGAAGGTGCACAACGATGTGCGGCCCTTCGTGTGTAACATT
TGCTCGAAGGCCTTCGCCCAGGCTGTGAACCTGCAGCGCCACTATGCGGT
GCACAGCGGGGAGCGGCCATTCACCTGTAACTTCTGCAACAAGTCCTTCA
CCCAGCAGAGCAACATGAAGCGCCACAAGATGACACACACTGGCGAGAAG
CCGTTCCGCTGCCAGCGATGCGGCAGGTACTTTTCCCAGCTGGTCAACCT
CAAGAAACACAAGCTTGGCCACCTCAACGCCAAGCCCTACCAGTGTAATT
ACTGCGAGAAGGGCTTCACCCAGCTGTCAAACTTTAAGCGCCACTTGCAG
TCGCACATAAAGGAGGGCGTCGATGTGGACGTGCCCGCCTCTATCCAGGC
GGCTGCCGCCCTGGCCAGGGAACGGCTTGAGTCGGAGCAGAAACCAAGCT
TTTTCGAATGCATGGTGTGTCGGGCCATCTTTGATACCTTCGCTGACTAT
GAGAAGCACGAAGCCAAGTGCCATGAGGACCACGAAAGGGCCCAGCTGGA
GGTTAACCAGATGTCCCACATGCATCCAGACGACTATTTGCCCATGAAGT
TTGCCGTGCCCGATCTGGATACGCACGAAATCATAATTGAGACTACACAT
GCAAGCTTTCTAGACCAT
BO05039.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:53:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17385-RB | 837 | CG17385-PB | 1..834 | 17..850 | 4125 | 99.6 | Plus |
| CG17385-RA | 837 | CG17385-PA | 1..834 | 17..850 | 4125 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17385-RB | 1853 | CG17385-RB | 158..995 | 13..850 | 4130 | 99.5 | Plus |
| CG17385-RA | 1192 | CG17385-RA | 158..995 | 13..850 | 4130 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:53:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14410725..14411284 | 645..86 | 2755 | 99.5 | Minus |
| 2R | 25286936 | 2R | 14410214..14410418 | 850..646 | 1025 | 100 | Minus |
| 2R | 25286936 | 2R | 14411343..14411415 | 85..13 | 350 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:53:14 has no hits.
BO05039.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:33 Download gff for
BO05039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17385-RA | 1..837 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:33 Download gff for
BO05039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17385-RA | 1..837 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:26 Download gff for
BO05039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17385-RA | 162..995 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:33 Download gff for
BO05039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17385-RA | 1..837 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:47 Download gff for
BO05039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17385-RA | 162..995 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:47 Download gff for
BO05039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14410725..14411284 | 86..645 | 99 | <- | Minus |
| 2R | 14411343..14411411 | 17..85 | 100 | | Minus |
| 2R | 14410212..14410418 | 646..852 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:26 Download gff for
BO05039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10297717..10297923 | 646..852 | 99 | <- | Minus |
| arm_2R | 10298230..10298789 | 86..645 | 99 | <- | Minus |
| arm_2R | 10298848..10298916 | 17..85 | 100 | | Minus |
BO05039.pep Sequence
Translation from 16 to 868
> BO05039.pep
MAGMEVEFDETVANQFSCKRCDRTFRSKRDQTLHRQEVHNHNKTTYECKL
CAKSFCNSGNLDRHMKVHNDVRPFVCNICSKAFAQAVNLQRHYAVHSGER
PFTCNFCNKSFTQQSNMKRHKMTHTGEKPFRCQRCGRYFSQLVNLKKHKL
GHLNAKPYQCNYCEKGFTQLSNFKRHLQSHIKEGVDVDVPASIQAAAALA
RERLESEQKPSFFECMVCRAIFDTFADYEKHEAKCHEDHERAQLEVNQMS
HMHPDDYLPMKFAVPDLDTHEIIIETTHASFLDH
BO05039.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17385-PB | 278 | CG17385-PB | 1..278 | 1..278 | 1531 | 100 | Plus |
| CG17385-PA | 278 | CG17385-PA | 1..278 | 1..278 | 1531 | 100 | Plus |
| sens-2-PB | 746 | CG31632-PB | 507..691 | 16..200 | 381 | 38.7 | Plus |
| sens-2-PA | 746 | CG31632-PA | 507..691 | 16..200 | 381 | 38.7 | Plus |
| Meics-PB | 571 | CG8474-PB | 318..536 | 18..270 | 370 | 31.1 | Plus |
| sens-2-PB | 746 | CG31632-PB | 507..673 | 46..238 | 294 | 30.4 | Plus |
| sens-2-PA | 746 | CG31632-PA | 507..673 | 46..238 | 294 | 30.4 | Plus |
| sens-2-PB | 746 | CG31632-PB | 560..672 | 12..125 | 223 | 35.7 | Plus |
| sens-2-PA | 746 | CG31632-PA | 560..672 | 12..125 | 223 | 35.7 | Plus |
