Clone Sequence Records
BO05040.3prime Sequence
955 bp (829 high quality bases) assembled on 2005-12-02
> BO05040.3prime
ATGGTCTAGAAAGCTTGCGTTTTCTGTTGTTCCTTTTGGTAACTTTTGAG
TCATAACGCGAAGTTCATCCAACGTTGGAACATTGAGGCGAGAGGGCAAC
CGTGCTCCATCCTCCTGCTGAACTTCCTGCGGATGTTTCTTGAGCTTGTG
CGACCGGCAATTGGCATTACAGGCAAAGGACTTGCCACAGTAGTTGCAAA
CGTACGGTCGCAGCCCCGTGTGGCTCAGCAAGTGGGTCTTGAGAGTCTTT
GAGCGCTTGAAGAGAGCGCCGCAGACATCACACTTCAGGCGCCGCTCCTC
GGTGTGCACGACCTTGTGCATGTTCCAGGTGCGACGCGTTTGCAGCTTCT
TGCCGCAAATGTTGCACACGAAACTGGGCTCCGCATGGATTTGGTAGTGG
GCCTTCAGCCGAGCCCGATTCTTAAAGCCCGCCTTGCAGACGGTGCACTC
GAAGGGACGGCTTTCCGTGTGAACCAGCTTGTGTTCATTTAGTGCTGTTA
TTGTCTTCAGTTGCTTGCCGCAACTATCGCAGATATATGGCTTGACATTC
TGGTGTATGCCCTCTTTGTGGAGCTTCAGCGCTGTGGCGGAGGATAGCGT
TTTGTTGCAAATATCACAGGTTGTTGTTGTTTTGTCCACTTTCACACGCC
GCTCGATCCGGCGGCACTCGCGTTCCAAGTGTTTCTCGTATGAAGCGCGG
TTTCTGTAGACCTTGCCACATTTCTCGCAGTCCATTCGACCCCGTTTGGC
CTTCTCCTCGGCAGTTGATTCCAGAGTATTTGGCGTGGTTGCCACAGCGA
CGAGATCCATTAGCTGGCCATCTACGGGCAGGAAATCGTCGTCTCCTTCA
CAGCTGTCAAGCATTTCTGATTTGACATCATTCTCCATTGAGGCCGGAGA
GGTTGTGCTGTCGAGGCGCGGTTGCGATAGTTCCTCCTGAGGCAGTTCGT
CTAGC
BO05040.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17568-PA | 1542 | CG17568-RA | 603..1539 | 955..19 | 4685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17568-RA | 1839 | CG17568-RA | 702..1638 | 955..19 | 4685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19180041..19180944 | 52..955 | 4520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:43:36 has no hits.
BO05040.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:54 Download gff for
BO05040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-PA | 603..1542 | 18..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:52 Download gff for
BO05040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-PA | 603..1542 | 18..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:31 Download gff for
BO05040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-RA | 702..1644 | 10..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:10 Download gff for
BO05040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-RA | 702..1644 | 10..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:10 Download gff for
BO05040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19180042..19180944 | 53..955 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:31 Download gff for
BO05040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19180042..19180944 | 53..955 | 100 | | Plus |
BO05040.5prime Sequence
856 bp (704 high quality bases) assembled on 2005-12-02
> BO05040.5prime
GAAGTTATCAGTCGACATGACGGACGGCAGCCACTGGTTGAACTGGTGTC
GCCTGTGCGCCAAGGACGACGCCCACGGCAATGTGAAGGTGCAAATGAAT
GAGAATTCTCAGGGAAACTGGGACAATGTCCTGATAATGGCCATTCGCAA
GTACTTCGAAGTGCAAATGCAACTGGAGGACGAGCTAAGCAGCGTGCTGT
GTACGGAGTGCTATACGCTTATTAGCGAACTAATCGATTTTGCAGAGCAT
GTGACCAAAGTGCAAGACATCTTTGAGGTCCTGCGGCGAACAGAAACAGA
TGGGGACCAGGAAATGGACGTGGCTGCACTGCGTCAGCAGTTTGGACTGT
GCGATGACGACTGGACGCACATTATAAAGCCAATTCCTGCTCTTGAAATG
GAGTCCGATAATGTTTATCAAAAACCCGCCGAACTATTAAAGGACTTTCC
TTTGGCGGAGACAAGCAGCCAAGAAATGGAAATATCGAAAAGGACAACAA
CAACCCACTTAATTCAAACCAAAAAGAACGTAGAAATGGAGATACCCAAG
CAAGAATTCATCGACTTAGGTCCCATTCTGTTGGAAAAGAACACAAGTCA
ACTGGACATGGAGGATGTGCTAGACGAACTGCCTCAGGAGGAACTATCGC
AACCGCGCCTCGACAGCACAACCTCTCCGGCCTCAATGGAGAATGATGTC
AAATCAGAAATGCTTGACAGCTGTGAAGGAGACGACGATTTCCTGCCCGT
AGATGGCCAGCTAATGGATCTCGTCGCTGTGGCAACCACGCCAAATACTC
TGGAATCAACTGCCGAGGAGAAGGCCAAACGGGGTCGAATGGACTGCGAG
AAATGT
BO05040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17568-PA | 1542 | CG17568-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
| CG10366-PA | 1737 | CG10366-RA | 82..109 | 44..71 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17568-RA | 1839 | CG17568-RA | 100..939 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19180707..19181396 | 856..167 | 3450 | 100 | Minus |
| 2L | 23513712 | 2L | 19181454..19181603 | 166..17 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:30:06 has no hits.
BO05040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:55 Download gff for
BO05040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:53 Download gff for
BO05040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:08:49 Download gff for
BO05040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-RA | 100..939 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:14:08 Download gff for
BO05040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-RA | 100..939 | 17..856 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:14:08 Download gff for
BO05040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19180707..19181396 | 167..856 | 100 | <- | Minus |
| 2L | 19181454..19181603 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:08:49 Download gff for
BO05040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19180707..19181396 | 167..856 | 100 | <- | Minus |
| arm_2L | 19181454..19181603 | 17..166 | 100 | | Minus |
BO05040.complete Sequence
1573 bp (1573 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629952
> BO05040.complete
GAAGTTATCAGTCGACATGACGGACGGCAGCCACTGGTTGAACTGGTGTC
GCCTGTGCGCCAAGGACGACGCCCACGGCAATGTGAAGGTGCAAATGAAT
GAGAATTCTCAGGGAAACTGGGACAATGTCCTGATAATGGCCATTCGCAA
GTACTTCGAAGTGCAAATGCAACTGGAGGACGAGCTAAGCAGCGTGCTGT
GTACGGAGTGCTATACGCTTATTAGCGAACTAATCGATTTTGCAGAGCAT
GTGACCAAAGTGCAAGACATCTTTGAGGTCCTGCGGCGAACAGAAACAGA
TGGGGACCAGGAAATGGACGTGGCTGCACTGCGTCAGCAGTTTGGACTGT
GCGATGACGACTGGACGCACATTATAAAGCCAATTCCTGCTCTTGAAATG
GAGTCCGATAATGTTTATCAAAAACCCGCCGAACTATTAAAGGACTTTCC
TTTGGCGGAGACAAGCAGCCAAGAAATGGAAATATCGAAAAGGACAACAA
CAACCCACTTAATTCAAACCAAAAAGAACGTAGAAATGGAGATACCCAAG
CAAGAATTCATCGACTTAGGTCCCATTCTGTTGGAAAAGAACACAAGTCA
ACTGGACATGGAGGATGTGCTAGACGAACTGCCTCAGGAGGAACTATCGC
AACCGCGCCTCGACAGCACAACCTCTCCGGCCTCAATGGAGAATGATGTC
AAATCAGAAATGCTTGACAGCTGTGAAGGAGACGACGATTTCCTGCCCGT
AGATGGCCAGCTAATGGATCTCGTCGCTGTGGCAACCACGCCAAATACTC
TGGAATCAACTGCCGAGGAGAAGGCCAAACGGGGTCGAATGGACTGCGAG
AAATGTGGCAAGGTCTACAGAAACCGCGCTTCATACGAGAAACACTTGGA
ACGCGAGTGCCGCCGGATCGAGCGGCGTGTGAAAGTGGACAAAACAACAA
CAACCTGTGATATTTGCAACAAAACGCTATCCTCCGCCACAGCGCTGAAG
CTCCACAAAGAGGGCATACACCAGAATGTCAAGCCATATATCTGCGATAG
TTGCGGCAAGCAACTGAAGACAATAACAGCACTAAATGAACACAAGCTGG
TTCACACGGAAAGCCGTCCCTTCGAGTGCACCGTCTGCAAGGCGGGCTTT
AAGAATCGGGCTCGGCTGAAGGCCCACTACCAAATCCATGCGGAGCCCAG
TTTCGTGTGCAACATTTGCGGCAAGAAGCTGCAAACGCGTCGCACCTGGA
ACATGCACAAGGTCGTGCACACCGAGGAGCGGCGCCTGAAGTGTGATGTC
TGCGGCGCTCTCTTCAAGCGCTCAAAGACTCTCAAGACCCACTTGCTGAG
CCACACGGGGCTGCGACCGTACGTTTGCAACTACTGTGGCAAGTCCTTTG
CCTGTAATGCCAATTGCCGGTCGCACAAGCTCAAGAAACATCCGCAGGAA
GTTCAGCAGGAGGATGGAGCACGGTTGCCCTCTCGCCTCAATGTTCCAAC
GTTGGATGAACTTCGCGTTATGACTCAAAAGTTACCAAAAGGAACAACAG
AAAACGCAAGCTTTCTAGACCAT
BO05040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17568-RA | 1542 | CG17568-PA | 1..1539 | 17..1555 | 7695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17568-RA | 1839 | CG17568-RA | 100..1638 | 17..1555 | 7695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19180041..19181396 | 1522..167 | 6780 | 100 | Minus |
| 2L | 23513712 | 2L | 19181454..19181603 | 166..17 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:38:23 has no hits.
BO05040.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:43 Download gff for
BO05040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-RA | 1..1542 | 17..1556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:50 Download gff for
BO05040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-RA | 100..1644 | 17..1564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:43 Download gff for
BO05040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-RA | 100..1638 | 17..1557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:43 Download gff for
BO05040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-RA | 100..1644 | 17..1564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:42 Download gff for
BO05040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-RA | 100..1638 | 17..1557 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:42 Download gff for
BO05040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19179948..19179983 | 1522..1557 | 94 | <- | Minus |
| 2L | 19180042..19181396 | 167..1521 | 100 | <- | Minus |
| 2L | 19181454..19181603 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:43 Download gff for
BO05040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19179948..19179983 | 1522..1557 | 94 | <- | Minus |
| arm_2L | 19180042..19181396 | 167..1521 | 100 | <- | Minus |
| arm_2L | 19181454..19181603 | 17..166 | 100 | | Minus |
BO05040.pep Sequence
Translation from 16 to 1573
> BO05040.pep
MTDGSHWLNWCRLCAKDDAHGNVKVQMNENSQGNWDNVLIMAIRKYFEVQ
MQLEDELSSVLCTECYTLISELIDFAEHVTKVQDIFEVLRRTETDGDQEM
DVAALRQQFGLCDDDWTHIIKPIPALEMESDNVYQKPAELLKDFPLAETS
SQEMEISKRTTTTHLIQTKKNVEMEIPKQEFIDLGPILLEKNTSQLDMED
VLDELPQEELSQPRLDSTTSPASMENDVKSEMLDSCEGDDDFLPVDGQLM
DLVAVATTPNTLESTAEEKAKRGRMDCEKCGKVYRNRASYEKHLERECRR
IERRVKVDKTTTTCDICNKTLSSATALKLHKEGIHQNVKPYICDSCGKQL
KTITALNEHKLVHTESRPFECTVCKAGFKNRARLKAHYQIHAEPSFVCNI
CGKKLQTRRTWNMHKVVHTEERRLKCDVCGALFKRSKTLKTHLLSHTGLR
PYVCNYCGKSFACNANCRSHKLKKHPQEVQQEDGARLPSRLNVPTLDELR
VMTQKLPKGTTENASFLDH
BO05040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17568-PA | 513 | CG17568-PA | 1..513 | 1..513 | 2731 | 100 | Plus |
| wek-PB | 470 | CG4148-PB | 6..466 | 5..508 | 823 | 38.5 | Plus |
| wek-PA | 470 | CG4148-PA | 6..466 | 5..508 | 823 | 38.5 | Plus |
| CG6254-PA | 634 | CG6254-PA | 14..592 | 3..509 | 817 | 33.8 | Plus |
| CG10366-PA | 578 | CG10366-PA | 23..500 | 5..504 | 662 | 30.4 | Plus |
