Clone BO05041 Report

Search the DGRC for BO05041

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG17803-RA
Protein status:BO05041.pep: Imported from assembly
Sequenced Size:1795

Clone Sequence Records

BO05041.3prime Sequence

441 bp (345 high quality bases) assembled on 2005-12-02

> BO05041.3prime
ATGGTCTAGAAAGCTTGCTATATATTCAATAGTTTGAGTCTTTTCATCCT
GAGTTCTGGCTCGCACTTCCTGTGCATTTGGCTGCATTGGTGTTTGAGAT
TCAAAGTCCATTTCCTTATCAATATCTTTAAATGCTTGTTGCAGTCCATT
AACTTCTTCTTTTATAGCTTTCTGCATATTATCCCGATGCAAATCGGTGT
TTTTGTGTTTGTTTAGATTATATCTATGGCGGTAGTGAACATCGCAGATC
TCGCACCGATGAGGATGCATTCCTGTGTGTACATCCTGATGCTTTGTTAG
TTGGGAGCGCAGCAGGAATCCCTTTAGGCAGATGTCACAGCGAATGGGAA
ACTTGTCGTGCAAAGCTTGATGTCGTTTCATGGCAGATGGGTCAGCGAAT
TTCATCTGGCAAATCTTGCACTGAAAGGGTCTGCTTCCGTT

BO05041.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17803-PA 1764 CG17803-RA 1339..1761 441..19 2090 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17803-RB 2238 CG17803-RB 1690..2112 441..19 2100 99.8 Minus
CG17803-RA 2019 CG17803-RA 1471..1893 441..19 2100 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17799003..17799241 19..257 1195 100 Plus
3R 32079331 3R 17799305..17799492 254..441 925 99.5 Plus
Blast to na_te.dros performed on 2015-02-11 04:50:24 has no hits.

BO05041.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:57 Download gff for BO05041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17803-PA 1339..1764 15..441 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:54 Download gff for BO05041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17803-PA 1339..1764 15..441 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:14:20 Download gff for BO05041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17803-RA 1471..1899 10..441 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:24:31 Download gff for BO05041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17803-RA 1471..1899 10..441 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:24:31 Download gff for BO05041.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17798995..17799240 10..256 98 <- Plus
3R 17799308..17799492 257..441 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:14:20 Download gff for BO05041.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13625030..13625214 257..441 99   Plus
arm_3R 13624717..13624962 10..256 98 <- Plus

BO05041.5prime Sequence

383 bp (355 high quality bases) assembled on 2005-12-02

> BO05041.5prime
GAAGTTATCAGTCGACATGAGGTCGTCTAGGACAGCCAGCGATTCAAAAT
GGGTGCGCCAGTCAAACGACAACAAAGACACAATGCGCTCCTCGCGGCAG
GTTAACAAAAAGCTTGTGAAGCTATTCCTGGCGGAGGCAGACGACAGTGA
CGCCACCTGCACCACATCCACTGCCCTGGACACGACCACAGCAGACAGTG
CGTTTTTTGATAGTGATTTCGAAGAGGAGAGCACTGGGCTCCAGGAATGC
GATCCCCCGCCGGCAAGCAAGTGCCGCACCTGCTTTCGCATCATATCGCG
GCATGAGGATGCTCAGGATCTATATGACAGGGTCAACATAGCGCTTCTGC
ACCACATAAAGGTCATCACTGGGGTGTGGATAC

BO05041.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17803-PA 1764 CG17803-RA 1..367 17..383 1835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17803-RB 2238 CG17803-RB 352..718 17..383 1835 100 Plus
CG17803-RA 2019 CG17803-RA 133..499 17..383 1835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17800720..17801051 383..52 1645 99.7 Minus
3R 32079331 3R 17801111..17801161 67..17 210 94.1 Minus
Blast to na_te.dros performed on 2015-02-10 17:13:38 has no hits.

BO05041.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:58 Download gff for BO05041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17803-PA 1..367 17..383 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:56 Download gff for BO05041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17803-PA 1..367 17..383 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:52:09 Download gff for BO05041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17803-RA 127..499 8..383 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:55 Download gff for BO05041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17803-RA 127..499 8..383 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:55 Download gff for BO05041.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17800720..17801050 53..383 99 <- Minus
3R 17801126..17801167 8..52 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:52:09 Download gff for BO05041.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13626442..13626772 53..383 99 <- Minus
arm_3R 13626848..13626889 8..52 91   Minus

BO05041.complete Sequence

1795 bp assembled on 2010-02-24

GenBank Submission: KX794236

> BO05041.complete
GAAGTTATCAGTCGACATGAGGTCGTCTAGGACAGCCAGCGATTCAAAAT
GGGTGCGCCAGTCAAACGACAACAAAGACACAATGCGCTCCTCGCGGCAG
GTTAACAAAAAGCTTGTGAAGCTATTCCTGGCGGAGGCAGACGACAGTGA
CGCCACCTGCACCACATCCACTGCCCTGGACACGACCACAGCAGACAGTG
CGTTTTTTGATAGTGATTTCGAAGAGGAGAGCACTGGGCTCCAGGAATGC
GATCCCCCGCCGGCAAGCAAGTGCCGCACCTGCTTTCGCATCATATCGCG
GCATGAGGATGCTCAGGATCTATATGACAGGGTCAACATAGCGCTTCTGC
ACCACATAAAGGTCATCACTGGGGTGTGGATACAACAAGGAGTCAAAGAG
CTACCGCATCACATTTGCTCAACGTGCCAGGAAACTGTGAATAAATCCAT
GGAATTCCGTGCCAAATGCCAGCAGGTCGACAAAAAGCTTAGGCAGACGA
CGGAAAAGTACAACATTCAAATCTGTGACGAGGAAATGGAGTCGGAGCTG
GAAAATGTGCTCTACGAAGAGTCCGCCCAGCAGGCAAAGGGAGTCGTAGG
ACTAGAAGATTTCAGCTCAGAGTTGTTGCCGGATAGTGAGGGTGTCCTGG
ATGAAGACGACTTTCCACTGGATGCAGAGCCAACTCAGTTTTCACTAAGT
GAAGATGAGTTGGATCTAGACAGAGACACAGAAAAAGACTTTGCTTTGGA
GCAAAACAAGTCATGTAATGAAATAATTAGCATACGAAAGTGTAAGACTA
AGGAAGAGATTGGTAAGGTAGATCACGGAGCCAAGGTCTATAAGGTTGTG
CTCGGTGAGTACAATAGCCTAAAGGAAACTGCACCAAAGTATTCGCTTTC
ACTACCAAAGAAACCTCAACTAAGGGTGAGTCCAGAGGAGAAAAACCGAA
GGCGCCGCGAAAGGATACAAGCGAAGCCATTGAACTATGTCTGCGACAAG
TGCGGCCACACCTTTCGCCAACGCAGTCAGCTGCAGATGCACTTGCTCCG
TCACAATAGGGCCAAGAATTTCGAGTGCCCCGAATGCCCGAAGAAATTCT
ACGATCTCTATACGCGCAACATTCACGTAAGAGCGCTGCACAAGGGCGAG
CATCCCTTTCCCTGCAACCATTGCAATGAGTCCTTCGCAAACGCAAGCAG
TCGTCACAGGCACGAGAGGGATGTTCACGGAGCAGGCAATCGGATTCGAA
CGCGGGTGAAATCAAAGGAAGAGGGATCCAGTCGCCATTACTGCACCCAG
TGCACCAAAAGTTATACCAGCAAGAAAGGTCTAGTCCTGCACATGAACTT
CCACAACGGAAGCAGACCCTTCCAGTGCAAGATTTGCCAGATGAAATTCG
CTGACCCATCTGCCATGAAACGACATCAAGCTTTGCACGACAAGTTTCCC
ATTCGCTGTGACATCTGCCTAAAGGGATTCCTGCTGCGCTCCCAACTAAC
AAAGCATCAGGATGTACACACAGGAATGCATCCTCATCGGTGCGAGATCT
GCGATGTTCACTACCGCCATAGATATAATCTAAACAAACACAAAAACACC
GATTTGCATCGGGATAATATGCAGAAAGCTATAAAAGAAGAAGTTAATGG
ACTGCAACAAGCATTTAAAGATATTGATAAGGAAATGGACTTTGAATCTC
AAACACCAATGCAGCCAAATGCACAGGAAGTGCGAGCCAGAACTCAGGAT
GAAAAGACTCAAACTATTGAATATATAGCAAGCTTTCTAGACCAT

BO05041.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17803-RB 1764 CG17803-PB 1..1761 17..1777 8805 100 Plus
CG17803-RA 1764 CG17803-PA 1..1761 17..1777 8805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17803-RB 2238 CG17803-RB 352..2112 17..1777 8805 100 Plus
CG17803-RA 2019 CG17803-RA 133..1893 17..1777 8805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17799684..17800524 1219..379 4205 100 Minus
3R 32079331 3R 17800720..17801051 383..52 1645 99.7 Minus
3R 32079331 3R 17799305..17799630 1542..1217 1630 100 Minus
3R 32079331 3R 17799003..17799241 1777..1539 1195 100 Minus
3R 32079331 3R 17801111..17801161 67..17 210 94.1 Minus
Blast to na_te.dros performed 2014-11-28 04:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 3166..3218 618..566 121 69.8 Minus

BO05041.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-24 09:36:39 Download gff for BO05041.complete
Subject Subject Range Query Range Percent Splice Strand
CG17803-RA 133..1893 17..1779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:44 Download gff for BO05041.complete
Subject Subject Range Query Range Percent Splice Strand
CG17803-RA 133..1893 17..1779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:20 Download gff for BO05041.complete
Subject Subject Range Query Range Percent Splice Strand
CG17803-RA 133..1893 17..1779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:20 Download gff for BO05041.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17799001..17799240 1540..1779 99 <- Minus
3R 17799308..17799628 1219..1539 100 <- Minus
3R 17799685..17800523 380..1218 100 <- Minus
3R 17800724..17801050 53..379 100 <- Minus
3R 17801126..17801161 17..52 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:44 Download gff for BO05041.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13624723..13624962 1540..1779 99 <- Minus
arm_3R 13625030..13625350 1219..1539 100 <- Minus
arm_3R 13625407..13626245 380..1218 100 <- Minus
arm_3R 13626446..13626772 53..379 100 <- Minus
arm_3R 13626848..13626883 17..52 100   Minus

BO05041.pep Sequence

Translation from 16 to 1795

> BO05041.pep
MRSSRTASDSKWVRQSNDNKDTMRSSRQVNKKLVKLFLAEADDSDATCTT
STALDTTTADSAFFDSDFEEESTGLQECDPPPASKCRTCFRIISRHEDAQ
DLYDRVNIALLHHIKVITGVWIQQGVKELPHHICSTCQETVNKSMEFRAK
CQQVDKKLRQTTEKYNIQICDEEMESELENVLYEESAQQAKGVVGLEDFS
SELLPDSEGVLDEDDFPLDAEPTQFSLSEDELDLDRDTEKDFALEQNKSC
NEIISIRKCKTKEEIGKVDHGAKVYKVVLGEYNSLKETAPKYSLSLPKKP
QLRVSPEEKNRRRRERIQAKPLNYVCDKCGHTFRQRSQLQMHLLRHNRAK
NFECPECPKKFYDLYTRNIHVRALHKGEHPFPCNHCNESFANASSRHRHE
RDVHGAGNRIRTRVKSKEEGSSRHYCTQCTKSYTSKKGLVLHMNFHNGSR
PFQCKICQMKFADPSAMKRHQALHDKFPIRCDICLKGFLLRSQLTKHQDV
HTGMHPHRCEICDVHYRHRYNLNKHKNTDLHRDNMQKAIKEEVNGLQQAF
KDIDKEMDFESQTPMQPNAQEVRARTQDEKTQTIEYIASFLDH

BO05041.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17803-PB 587 CG17803-PB 1..587 1..587 3147 100 Plus
CG17803-PA 587 CG17803-PA 1..587 1..587 3147 100 Plus
CG6689-PA 613 CG6689-PA 94..603 10..537 800 32.6 Plus
CG17801-PB 381 CG17801-PB 28..362 108..470 378 28.4 Plus
CG17802-PA 439 CG17802-PA 4..415 85..470 370 25.9 Plus