Clone BO05042 Report

Search the DGRC for BO05042

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG18476-RA
Protein status:BO05042.pep: Imported from assembly
Sequenced Size:2842

Clone Sequence Records

BO05042.3prime Sequence

934 bp (821 high quality bases) assembled on 2005-12-02

> BO05042.3prime
ATGGTCTAGAAAGCTTGCCTTTTGGCGTCTCAGCCACGCTTCCACCTCGT
CGAAGTGACGCCGCATCAACCGATGCTTCTCCAGCGTGCTGCTCTGGATG
AAGCGCTCGCCACAGGTGCCGCACACGAAAGGACATTCGCCGGTGTGCTG
CTGGAGATGAAGCTTCAGGTCCTTGGCCTGACGGTAACTCTTCTCGCAGT
AGGTGCATTTGTGCGGCTTTAGGCCGCTGTGCGTAAGCATATGGCGCTTG
AGCTTATCGGAGCGGGCAAAGTCCTTGCCACAGACGGTGCAGTGGAATGG
CTTCTCGCCGGTGTGCATCCGGCGGTGCGAGGCCAGCTCTGAGTGGCGGG
GAAAGGCCATTTCGCACAGATCGCACTTGAAGGGCTTCTCGCCAGTGTGG
CGTCGCATATGGGTCACAAGAGCGGCGGCTGATCTCGTCTCCATTCCGCA
CAGGGAGCAGAGGAAGCGCTTAATTGCCTCCTTGCGCTTGCGGTCGCCGT
TAATGTGCACATCGCGAATATGATTGTTCAGGCGCGACTTCATCTGGTAC
GTGCGATCGCAGTGTGGACACTGTAGCAGCGGTATTCCGTCCTCAGTGGC
ATCCTTTTCCAGGTCACCGGTCCCTTGCGTGTGTCTGTCGCCAGTCGGAT
TGCTGACGGAAGACTTGCTGTGTTGCAGGAGAATGTGCTGCTCTAGGTTC
TCTGGCCACATAAACTTGTAGGAACACTTGCCACATGCATGCTTCTTTTC
TGTACTACTACACTGACCTTGCCGGTGGTGGTCCATAATGCTCTTGGAGA
CACATTTAAAGATGCAGTCGTCGCATTCGTGTGGCATTTTGTCCAAGCGA
TGCATCGTCCGCTGATGCTGGATCATTTCGAACTCCCGCTTGCACTGCAC
GCTGCACAGCTCGCAAATATATACGGGGCGACTG

BO05042.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG18476-PA 2811 CG18476-RA 1893..2808 934..19 4530 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG18476-RA 2946 CG18476-RA 1993..2908 934..19 4550 99.8 Minus
CG10669-RB 3310 CG10669-RB 2700..2754 412..358 185 89.1 Minus
CG10669-RA 3008 CG10669-RA 2700..2754 412..358 185 89.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11674958..11675733 19..794 3880 100 Plus
3R 32079331 3R 11675803..11675944 793..934 680 98.6 Plus
3R 32079331 3R 25331919..25331973 358..412 185 89.1 Plus
Blast to na_te.dros performed on 2015-02-12 14:15:20 has no hits.

BO05042.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:15:59 Download gff for BO05042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18476-PA 1893..2811 15..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:57 Download gff for BO05042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18476-PA 1893..2811 15..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:07:12 Download gff for BO05042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18476-RA 1993..2912 14..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:00 Download gff for BO05042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18476-RA 1993..2912 14..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:00 Download gff for BO05042.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11674954..11675731 14..792 99 <- Plus
3R 11675803..11675944 793..934 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:07:12 Download gff for BO05042.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7500676..7501453 14..792 99 <- Plus
arm_3R 7501525..7501666 793..934 98   Plus

BO05042.5prime Sequence

908 bp (774 high quality bases) assembled on 2005-12-02

> BO05042.5prime
GAAGTTATCAGTCGACATGAAGCTGCCGGTGATTTGTCGCACGTGCGACT
CCACGGACACCGACAACCTTCTGAAGCTGGCCACGCCCTCGAAAAAGTAT
CCGGACAAGTTGCTTTCGGAGATTTTATGCGAGCTAACCGAAATCAATCT
GGATGCAACTGGTAGTCAGAAATTTCCGCAATGCTTGTGCAGTGGATGCA
CCAAAAAATTAATGGGTGCCTATTGCTATGTGAAGCAGGCGATGGCCGCC
AACGAACTTCTAATGAAGCATCTAAAGAACGGTGCTGCTCCAACGTCAAC
CGACTGTCTGCAGGAGGCGCCGATGGAGCTGTGTGCTGAGCAGCATGTGG
AAGTCAAGCTGGAGACTGAGGATGAGGACTGTGGCGAAAATGATGTTACT
ATCACTTGTTCCGAACTACCGGAACCGGACGAAACGGACATGGAGAGCAA
AAAGTCGGTGGACCCACTGACCATGATTGAAACGGTGAAGCTGGAAATGG
AACCCAGAAGCGTGGAGAAGCCAGCGTATGACGATCCCACATCGGACTTT
GAAGACGAAGACTCCCTGGATAATTTGCCACTGTATAATCGCATTCAAAA
GTGGAAAACAGGAAGAAAGTCTGTATATAAATGTCACGACTGCCCTAGGA
GTTTTAAACGATTCGACTTCTTGAAACGCCATGAAATGCGCGTCCATAAG
CCAGAAACTCGATTATATGACTGCTCCCTTTGCATTCGCAAGTTCAGCCG
CAGCGAAGCCCTCGAAGCACACCTAAAAATTCACCGGAATTCAAAACGAT
CGGCCAACATTAGCGAGCACAAGAAGGCCAAGGCTGTGGATTTGAATCTC
TGCAAACCGCATGGCTACAAGCTGATTGAGTGCATGATCTGTCAGAGCCA
ATACAACA

BO05042.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG18476-PA 2811 CG18476-RA 1..892 17..908 4460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG18476-RA 2946 CG18476-RA 96..992 12..908 4470 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11677405..11677817 561..149 2065 100 Minus
3R 32079331 3R 11677003..11677349 908..562 1735 100 Minus
3R 32079331 3R 11677885..11678021 148..12 670 99.3 Minus
Blast to na_te.dros performed on 2015-02-13 01:30:48 has no hits.

BO05042.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:00 Download gff for BO05042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18476-PA 1..891 17..907 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:34:59 Download gff for BO05042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18476-PA 1..891 17..907 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:08:50 Download gff for BO05042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18476-RA 90..991 7..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:16:51 Download gff for BO05042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18476-RA 90..991 7..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:16:51 Download gff for BO05042.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11677004..11677349 562..907 100 <- Minus
3R 11677405..11677817 149..561 100 <- Minus
3R 11677885..11678027 7..148 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:08:50 Download gff for BO05042.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7502726..7503071 562..907 100 <- Minus
arm_3R 7503127..7503539 149..561 100 <- Minus
arm_3R 7503607..7503749 7..148 97   Minus

BO05042.complete Sequence

2842 bp assembled on 2008-08-14

GenBank Submission: FJ629953

> BO05042.complete
GAAGTTATCAGTCGACATGAAGCTGCCGGTGATTTGTCGCACGTGCGACT
CCACGGACACCGACAACCTTCTGAAGCTGGCCACGCCCTCGAAAAAGTAT
CCGGACAAGTTGCTTTCGGAGATTTTATGCGAGCTAACCGAAATCAATCT
GGATGCAACTGGTAGTCAGAAATTTCCGCAATGCTTGTGCAGTGGATGCA
CCAAAAAATTAATGGGTGCCTATTGCTATGTGAAGCAGGCGATGGCCGCC
AACGAACTTCTAATGAAGCATCTAAAGAACGGTGCTGCTCCAACGTCAAC
CGACTGTCTGCAGGAGGCGCCGATGGAGCTGTGTGCTGAGCAGCATGTGG
AAGTCAAGCTGGAGACTGAGGATGAGGACTGTGGCGAAAATGATGTTACT
ATCACTTGTTCCGAACTACCGGAACCGGACGAAACGGACATGGAGAGCAA
AAAGTCGGTGGACCCACTGACCATGATTGAAACGGTGAAGCTGGAAATGG
AACCCAGAAGCGTGGAGAAGCCAGCGTATGACGATCCCACATCGGACTTT
GAAGACGAAGACTCCCTGGATAATTTGCCACTGTATAATCGCATTCAAAA
GTGGAAAACAGGAAGAAAGTCTGTATATAAATGTCACGACTGCCCTAGGA
GTTTTAAACGATTCGACTTCTTGAAACGCCATGAAATGCGCGTCCATAAG
CCAGAAACTCGATTATATGACTGCTCCCTTTGCATTCGCAAGTTCAGCCG
CAGCGAAGCCCTCGAAGCACACCTAAAAATTCACCGGAATTCAAAACGAT
CGGCCAACATTAGCGAGCACAAGAAGGCCAAGGCTGTGGATTTGAATCTC
TGCAAACCGCATGGCTACAAGCTGATTGAGTGCATGATCTGTCAGAGCCA
ATACAACAAGATTGCTGATCTGCGCCGGCATTTGGAGGAGCACCCCGATA
TTGTTAGCCTGTGCGGTCGGCCAAATATGGAGCCCCATGAGCTGGCAGAG
CTGTTTTATCCCGATTCAAAGGACCTCAGTGAGGAGCAGTTAATCAACTT
GATTCGCAAGGATCTAGCGGCGGGTATCTATCAGCGTTTCTATTCGATAA
CGAACCAAAGTGGCTACGAAATGGATCTGGACAGCTCGGAGACGGACAGC
GACCTGGACGGAGATCACGATGACCAGCACAAGAGGCGAAAGAAGTCGCG
CAAAGCCACCTACAGCTGCGAGCTGTGCCAGCAAAAGTTCCCGCGAAAAT
ATCAGCTTTATGACCATCAGCGACAAAGTCACAGTTGGTCAGACGCTCCT
CACGTCTGCGGGCGATGTGATGGACGTTTTGTAAGTCTGCAGCTGCTGCG
CCACCACAACGAGTCGCAGTGTAGGAATGCACAAAAGCGATTTCTCTGCC
ACAAATGCCCGCTACGCTTTCGCTGGAAACACAACCTGAAAACACACTTC
CGCGAACACAGGATTACAAATCAAACGTTTGAATGTTCCGAGTGCAAACG
GGTCTTTGATAAAAAGAAATCCCTCACCGTTCACCTGCTTAGCGTACATG
CGGAGGAATCCAAGCTGATTCCCTGCCAGTGGTGCAGTCGCAAATTCTAT
CGGCACGACTACTTGGTAAAACACTTGAAGCGACACGGTTTGAAAGAGCA
TGACATTCCCTTGGCAGAAACATTGATTGCTGCCACCTCGCGGCCAAACG
GAGCGAAGCGCATTACTTGCCGCATGTGCAATCTGCATTTCGAGCGTATT
GTTGATCTGCGAGCCCATATCCAGTTGGAGCTTAAGCTATCCCTGTCGCT
ACACCAGAGCTACGACTCCCCGCATAATTATTCAATAACAAACGAATCTG
GCTTTGAGCTGCAGCTGGAGGATTCGGAAACCGAAGACGAGATGCAGCCC
GGTGTGGGCAGTCGCCCCGTATATATTTGCGAGCTGTGCAGCGTGCAGTG
CAAGCGGAAGTTCGAAATGATCCAGCATCAGCGGACGATGCATCGCTTTG
ACAAAATGCCACACGAATGCGACGACTGCATCTTTAAATGTGTCTCCAAG
AGCATTATGGACCACCACCGGCAAGGTCAGTGTAGTAGTACAGAAAAGAA
GCATGCATGTGGCAAGTGTTCCTACAAGTTTATGTGGCCAGAGAACCTAG
AGCAGCACATTCTCCTGCAACACAGCAAGTCTTCCGTCAGCAATCCGACT
GGCGACAGACACACGCAAGGGACCGGTGACCTGGAAAAGGATGCCACTGA
GGACGGAATACCGCTGCTACAGTGTCCACACTGCGATCGCACGTACCAGA
TGAAGTCGCGCCTGAACAATCATATTCGCGATGTGCACATTAACGGCGAC
CGCAAGCGCAAGGAGGCAATTAAGCGCTTCCTCTGCTCCCTGTGCGGAAT
GGAGACGAGATCAGCCGCCGCTCTTGTGACCCATATGCGACGCCACACTG
GCGAGAAGCCCTTCAAGTGCGATCTGTGCGAAATGGCCTTTCCCCGCCAC
TCAGAGCTGGCCTCGCACCGCCGGATGCACACCGGCGAGAAGCCATTCCA
CTGCACCGTCTGTGGCAAGGACTTTGCCCGCTCCGATAAGCTCAAGCGCC
ATATGCTTACGCACAGCGGCCTAAAGCCGCACAAATGCACCTACTGCGAG
AAGAGTTACCGTCAGGCCAAGGACCTGAAGCTTCATCTCCAGCAGCACAC
CGGCGAATGTCCTTTCGTGTGCGGCACCTGTGGCGAGCGCTTCATCCAGA
GCAGCACGCTGGAGAAGCATCGGTTGATGCGGCGTCACTTCGACGAGGTG
GAAGCGTGGCTGAGACGCCAAAAGGCAAGCTTTCTAGACCAT

BO05042.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG18476-RA 2811 CG18476-PA 1..2808 17..2824 14040 100 Plus
CG10669-RB 2802 CG10669-PB 2604..2658 2431..2485 185 89.1 Plus
CG10669-RA 2802 CG10669-PA 2604..2658 2431..2485 185 89.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG18476-RA 2946 CG18476-RA 96..2908 12..2824 14050 100 Plus
CG10669-RB 3310 CG10669-RB 2700..2754 2431..2485 185 89.1 Plus
CG10669-RA 3008 CG10669-RA 2700..2754 2431..2485 185 89.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11676443..11677349 1468..562 4535 100 Minus
3R 32079331 3R 11674958..11675733 2824..2049 3880 100 Minus
3R 32079331 3R 11675803..11676384 2050..1469 2910 100 Minus
3R 32079331 3R 11677405..11677817 561..149 2065 100 Minus
3R 32079331 3R 11677885..11678021 148..12 670 99.3 Minus
3R 32079331 3R 25331919..25331973 2485..2431 185 89.1 Minus
Blast to na_te.dros performed on 2014-11-27 01:16:05 has no hits.

BO05042.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:26 Download gff for BO05042.complete
Subject Subject Range Query Range Percent Splice Strand
CG18476-RA 87..2909 7..2829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:39 Download gff for BO05042.complete
Subject Subject Range Query Range Percent Splice Strand
CG18476-RA 101..2908 17..2826 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:52 Download gff for BO05042.complete
Subject Subject Range Query Range Percent Splice Strand
CG18476-RA 98..2905 17..2826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:08 Download gff for BO05042.complete
Subject Subject Range Query Range Percent Splice Strand
CG18476-RA 101..2908 17..2826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:08 Download gff for BO05042.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11674956..11675731 2051..2826 99 <- Minus
3R 11675803..11676384 1469..2050 100 <- Minus
3R 11676443..11677349 562..1468 100 <- Minus
3R 11677405..11677817 149..561 100 <- Minus
3R 11677885..11678016 17..148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:39 Download gff for BO05042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7500678..7501453 2051..2826 99 <- Minus
arm_3R 7501525..7502106 1469..2050 100 <- Minus
arm_3R 7502165..7503071 562..1468 100 <- Minus
arm_3R 7503127..7503539 149..561 100 <- Minus
arm_3R 7503607..7503738 17..148 100   Minus

BO05042.pep Sequence

Translation from 16 to 2842

> BO05042.pep
MKLPVICRTCDSTDTDNLLKLATPSKKYPDKLLSEILCELTEINLDATGS
QKFPQCLCSGCTKKLMGAYCYVKQAMAANELLMKHLKNGAAPTSTDCLQE
APMELCAEQHVEVKLETEDEDCGENDVTITCSELPEPDETDMESKKSVDP
LTMIETVKLEMEPRSVEKPAYDDPTSDFEDEDSLDNLPLYNRIQKWKTGR
KSVYKCHDCPRSFKRFDFLKRHEMRVHKPETRLYDCSLCIRKFSRSEALE
AHLKIHRNSKRSANISEHKKAKAVDLNLCKPHGYKLIECMICQSQYNKIA
DLRRHLEEHPDIVSLCGRPNMEPHELAELFYPDSKDLSEEQLINLIRKDL
AAGIYQRFYSITNQSGYEMDLDSSETDSDLDGDHDDQHKRRKKSRKATYS
CELCQQKFPRKYQLYDHQRQSHSWSDAPHVCGRCDGRFVSLQLLRHHNES
QCRNAQKRFLCHKCPLRFRWKHNLKTHFREHRITNQTFECSECKRVFDKK
KSLTVHLLSVHAEESKLIPCQWCSRKFYRHDYLVKHLKRHGLKEHDIPLA
ETLIAATSRPNGAKRITCRMCNLHFERIVDLRAHIQLELKLSLSLHQSYD
SPHNYSITNESGFELQLEDSETEDEMQPGVGSRPVYICELCSVQCKRKFE
MIQHQRTMHRFDKMPHECDDCIFKCVSKSIMDHHRQGQCSSTEKKHACGK
CSYKFMWPENLEQHILLQHSKSSVSNPTGDRHTQGTGDLEKDATEDGIPL
LQCPHCDRTYQMKSRLNNHIRDVHINGDRKRKEAIKRFLCSLCGMETRSA
AALVTHMRRHTGEKPFKCDLCEMAFPRHSELASHRRMHTGEKPFHCTVCG
KDFARSDKLKRHMLTHSGLKPHKCTYCEKSYRQAKDLKLHLQQHTGECPF
VCGTCGERFIQSSTLEKHRLMRRHFDEVEAWLRRQKASFLDH

BO05042.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG18476-PA 936 CG18476-PA 1..936 1..936 5121 100 Plus
CG11902-PB 1426 CG11902-PB 670..1408 200..927 1591 41.5 Plus
CG10669-PB 933 CG10669-PB 298..930 198..867 1447 41.4 Plus
CG10669-PA 933 CG10669-PA 298..930 198..867 1447 41.4 Plus
CG11902-PB 1426 CG11902-PB 416..1141 205..928 608 25.5 Plus
CG11902-PB 1426 CG11902-PB 6..788 6..900 598 24.7 Plus
crol-PB 891 CG14938-PB 220..671 398..929 482 26.2 Plus
CG10669-PB 933 CG10669-PB 147..904 378..927 374 21.8 Plus
CG10669-PA 933 CG10669-PA 147..904 378..927 374 21.8 Plus
CG10669-PB 933 CG10669-PB 573..932 200..543 237 25.7 Plus
CG10669-PA 933 CG10669-PA 573..932 200..543 237 25.7 Plus