Clone BO05044 Report

Search the DGRC for BO05044

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptHLH3B-RA
Protein status:BO05044.pep: validated full length
Sequenced Size:1162

Clone Sequence Records

BO05044.3prime Sequence

840 bp (821 high quality bases) assembled on 2005-12-02

> BO05044.3prime
ATGGTCTAGAAAGCTTGCCGTCCTGCGCCGTTTGCCCAGACTGAGATCGG
TGGCTCCGCCTTCCGGCTTGAGGCGTCGCTTGCTACTCCGTCCGCTGGCC
GATTTTACACCGGATACGGTGCCACTGATTCGCTGAGTCTCGGCCATGGC
CAGCGGAGCAGTGGTCAACGGCAGGGGTGGGCCGTTTAACGGATGCCCAA
GTGGGAGTGTAGACTCCAGGAGAAGCTCGCTTTTGACAACGGCTCCCGGG
GCAATCATCAGCAGGTCGTTGCCAGCGTTTCCGTTGGCATGTCCGTGCCC
AATGCCATTCCTGTGCATCTGCCCGTCGGTGCGTTCACACTTGATGTGCC
GTACAGGCGGAACATCTGGATTCTCCAGATTCTCCCCGTCCGCCGCATGG
CCATTGGCCATCCTATTGTCGTTGTTGTTCGGCTCCATTTGAGCCCTGAT
CGGATGCGAGGGCGCCTGCCGCTGCTGCCACTCGAGGATGCCCGTCAGCA
GCTTAATGTACTTAATGGCCGAGCGCAGGATCTCGTTCTTCGATAGCTTC
TTGTCCGGCGGATGTGTGGGCACCAGCTTGCGCAGCTCTGCAAAGGCACC
GGACACGTTCTGCTGGCGCCATCGCTCCCTTGTGTTGGTGAACACCTTGC
GCACACCGCCGGTGGCTCCTACGCCGCTGCCGCCGCCACTGGATGCATTG
CCGCCGGAGCCATTGCCTCCACCACCGCCGCTACCGCCGACTGAGCTTCC
GGAGCTGGCCGGCGCGGTCAGCAGTCCGTTGCGGGAGTGACTGCGCGGCG
AACTGGACAGTGAGCGATTCGCATCCGCCTGGTTGCCATT

BO05044.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2655-PA 1131 HLH3B-RA 307..1128 840..19 4110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
HLH3B-RA 1428 CG2655-RA 372..1193 840..19 4110 100 Minus
HLH4C-RB 1424 CG3052-RB 563..632 596..527 230 88.6 Minus
HLH4C-RA 1424 CG3052-RA 563..632 596..527 230 88.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2680434..2681237 19..822 4020 100 Plus
X 23542271 X 4645919..4645988 527..596 230 88.6 Plus
Blast to na_te.dros performed on 2015-02-10 17:28:41 has no hits.

BO05044.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:03 Download gff for BO05044.3prime
Subject Subject Range Query Range Percent Splice Strand
HLH3B-PA 307..1131 18..840 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:03 Download gff for BO05044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2655-PA 307..1131 18..840 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:52:13 Download gff for BO05044.3prime
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 372..1193 19..840 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:10 Download gff for BO05044.3prime
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 372..1193 19..840 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:10 Download gff for BO05044.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2680434..2681236 19..821 100 <- Plus
X 2681334..2681352 822..840 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:52:13 Download gff for BO05044.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2574467..2575269 19..821 100 <- Plus
arm_X 2575367..2575385 822..840 100   Plus

BO05044.5prime Sequence

868 bp (720 high quality bases) assembled on 2005-12-02

> BO05044.5prime
GAAGTTATCAGTCGACATGGCCTGGCTACCGAGCAGCTCGAACGGAGCGG
ATAACGCGGACGAACGGAGCACCGCCTCGAGCGGATCCTCCGGCCACAGC
CAGACCAACGAGTCACCGCGATCCGGGCACCTGAACGGTAATGGTAGCAT
GCGGGACACTGCCGCTGGCAGGCATCCGCCCGCCCTGCTCCGACATGCCA
CGCCCCACCTGCAGCCCAAGACGGAGTCCATATCCGATGGAGACGGTGAC
GCGGAGCTTTCCGACTTCTCGCTCAACGACACGGAGGAGGACGAGGAGGA
TCTTCGCGATTACATCGTTCTGAATGGCAACCAGGCGGATGCGAATCGCT
CACTGTCCAGTTCGCCGCGCAGTCACTCCCGCAACGGACTGCTGACCGCG
CCGGCCAGCTCCGGAAGCTCAGTCGGCGGTAGCGGCGGTGGTGGAGGCAA
TGGCTCCGGCGGCAATGCATCCAGTGGCGGCGGCAGCGGCGTAGGAGCCA
CCGGCGGTGTGCGCAAGGTGTTCACCAACACAAGGGAGCGATGGCGCCAG
CAGAACGTGTCCGGTGCCTTTGCAGAGCTGCGCAAGCTGGTGCCCACACA
TCCGCCGGACAAGAAGCTATCGAAGAACGAGATCCTGCGCTCGGCCATTA
AGTACATTAAGCTGCTGACGGGCATCCTCGAGTGGCAGCAGCGGCAGGCG
CCCTCGCATCCGATCAGGGCTCAAATGGAGCCGAACAACAACGACAATAG
GATGGCCAATGGCCATGCGGCGGACGGGGAGAATCTGGAGAATCCAGATG
TTCCGCCTGTACGGCACATCAAGTGTGAACGCACCGACGGGCAGATGCAC
AGGAATGGGCATTGGGCA

BO05044.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2655-PA 1131 HLH3B-RA 1..842 17..858 4210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
HLH3B-RA 1428 CG2655-RA 66..916 17..868 4235 99.9 Plus
HLH4C-RB 1424 CG3052-RB 563..632 567..636 230 88.6 Plus
HLH4C-RA 1424 CG3052-RA 563..632 567..636 230 88.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2680720..2681237 858..341 2590 100 Minus
X 23542271 X 2681334..2681658 341..17 1625 100 Minus
X 23542271 X 4645919..4645988 636..567 230 88.6 Minus
Blast to na_te.dros performed on 2015-02-13 05:42:00 has no hits.

BO05044.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:03 Download gff for BO05044.5prime
Subject Subject Range Query Range Percent Splice Strand
HLH3B-PA 1..850 17..867 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:04 Download gff for BO05044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2655-PA 1..850 17..867 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:30 Download gff for BO05044.5prime
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 57..915 7..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:55 Download gff for BO05044.5prime
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 57..915 7..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:55 Download gff for BO05044.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2680712..2681236 342..867 99 <- Minus
X 2681334..2681667 7..341 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:30 Download gff for BO05044.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2574745..2575269 342..867 99 <- Minus
arm_X 2575367..2575700 7..341 98   Minus

BO05044.complete Sequence

1162 bp (1162 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629954

> BO05044.complete
GAAGTTATCAGTCGACATGGCCTGGCTACCGAGCAGCTCGAACGGAGCGG
ATAACGCGGACGAACGGAGCACCGCCTCGAGCGGATCCTCCGGCCACAGC
CAGACCAACGAGTCACCGCGATCCGGGCACCTGAACGGTAATGGTAGCAT
GCGGGACACTGCCGCTGGCAGGCATCCGCCCGCCCTGCTCCGACATGCCA
CGCCCCACCTGCAGCCCAAGACGGAGTCCATATCCGATGGAGACGGTGAC
GCGGAGCTTTCCGACTTCTCGCTCAACGACACGGAGGAGGACGAGGAGGA
TCTTCGCGATTACATCGTTCTGAATGGCAACCAGGCGGATGCGAATCGCT
CACTGTCCAGTTCGCCGCGCAGTCACTCCCGCAACGGACTGCTGACCGCG
CCGGCCAGCTCCGGAAGCTCAGTCGGCGGTAGCGGCGGTGGTGGAGGCAA
TGGCTCCGGCGGCAATGCATCCAGTGGCGGCGGCAGCGGCGTAGGAGCCA
CCGGCGGTGTGCGCAAGGTGTTCACCAACACAAGGGAGCGATGGCGCCAG
CAGAACGTGTCCGGTGCCTTTGCAGAGCTGCGCAAGCTGGTGCCCACACA
TCCGCCGGACAAGAAGCTATCGAAGAACGAGATCCTGCGCTCGGCCATTA
AGTACATTAAGCTGCTGACGGGCATCCTCGAGTGGCAGCAGCGGCAGGCG
CCCTCGCATCCGATCAGGGCTCAAATGGAGCCGAACAACAACGACAATAG
GATGGCCAATGGCCATGCGGCGGACGGGGAGAATCTGGAGAATCCAGATG
TTCCGCCTGTACGGCACATCAAGTGTGAACGCACCGACGGGCAGATGCAC
AGGAATGGCATTGGGCACGGACATGCCAACGGAAACGCTGGCAACGACCT
GCTGATGATTGCCCCGGGAGCCGTTGTCAAAAGCGAGCTTCTCCTGGAGT
CTACACTCCCACTTGGGCATCCGTTAAACGGCCCACCCCTGCCGTTGACC
ACTGCTCCGCTGGCCATGGCCGAGACTCAGCGAATCAGTGGCACCGTATC
CGGTGTAAAATCGGCCAGCGGACGGAGTAGCAAGCGACGCCTCAAGCCGG
AAGGCGGAGCCACCGATCTCAGTCTGGGCAAACGGCGCAGGACGGCAAGC
TTTCTAGACCAT

BO05044.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
HLH3B-RA 1131 CG2655-PA 1..1128 17..1144 5640 100 Plus
HLH4C-RB 576 CG3052-PB 380..449 567..636 230 88.6 Plus
HLH4C-RA 504 CG3052-PA 380..449 567..636 230 88.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
HLH3B-RA 1428 CG2655-RA 66..1193 17..1144 5640 100 Plus
HLH4C-RB 1424 CG3052-RB 563..632 567..636 230 88.6 Plus
HLH4C-RA 1424 CG3052-RA 563..632 567..636 230 88.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2680434..2681237 1144..341 4020 100 Minus
X 23542271 X 2681334..2681658 341..17 1625 100 Minus
X 23542271 X 4645919..4645988 636..567 230 88.6 Minus
Blast to na_te.dros performed on 2014-11-27 13:53:45 has no hits.

BO05044.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:44 Download gff for BO05044.complete
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 1..1131 17..1145 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:52 Download gff for BO05044.complete
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 57..1193 7..1144 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:56 Download gff for BO05044.complete
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 66..1193 17..1146 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:44 Download gff for BO05044.complete
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 57..1193 7..1144 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:25 Download gff for BO05044.complete
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 66..1193 17..1146 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:25 Download gff for BO05044.complete
Subject Subject Range Query Range Percent Splice Strand
X 2681334..2681658 17..341 100   Minus
X 2680432..2681236 342..1146 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:56 Download gff for BO05044.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2574465..2575269 342..1146 99 <- Minus
arm_X 2575367..2575691 17..341 100   Minus

BO05044.pep Sequence

Translation from 16 to 1162

> BO05044.pep
MAWLPSSSNGADNADERSTASSGSSGHSQTNESPRSGHLNGNGSMRDTAA
GRHPPALLRHATPHLQPKTESISDGDGDAELSDFSLNDTEEDEEDLRDYI
VLNGNQADANRSLSSSPRSHSRNGLLTAPASSGSSVGGSGGGGGNGSGGN
ASSGGGSGVGATGGVRKVFTNTRERWRQQNVSGAFAELRKLVPTHPPDKK
LSKNEILRSAIKYIKLLTGILEWQQRQAPSHPIRAQMEPNNNDNRMANGH
AADGENLENPDVPPVRHIKCERTDGQMHRNGIGHGHANGNAGNDLLMIAP
GAVVKSELLLESTLPLGHPLNGPPLPLTTAPLAMAETQRISGTVSGVKSA
SGRSSKRRLKPEGGATDLSLGKRRRTASFLDH

BO05044.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
HLH3B-PA 376 CG2655-PA 1..376 1..376 1961 100 Plus
Fer2-PE 273 CG5952-PE 105..205 134..222 153 41.6 Plus
Fer2-PB 274 CG5952-PB 105..205 134..222 153 41.6 Plus