Clone Sequence Records
BO05044.3prime Sequence
840 bp (821 high quality bases) assembled on 2005-12-02
> BO05044.3prime
ATGGTCTAGAAAGCTTGCCGTCCTGCGCCGTTTGCCCAGACTGAGATCGG
TGGCTCCGCCTTCCGGCTTGAGGCGTCGCTTGCTACTCCGTCCGCTGGCC
GATTTTACACCGGATACGGTGCCACTGATTCGCTGAGTCTCGGCCATGGC
CAGCGGAGCAGTGGTCAACGGCAGGGGTGGGCCGTTTAACGGATGCCCAA
GTGGGAGTGTAGACTCCAGGAGAAGCTCGCTTTTGACAACGGCTCCCGGG
GCAATCATCAGCAGGTCGTTGCCAGCGTTTCCGTTGGCATGTCCGTGCCC
AATGCCATTCCTGTGCATCTGCCCGTCGGTGCGTTCACACTTGATGTGCC
GTACAGGCGGAACATCTGGATTCTCCAGATTCTCCCCGTCCGCCGCATGG
CCATTGGCCATCCTATTGTCGTTGTTGTTCGGCTCCATTTGAGCCCTGAT
CGGATGCGAGGGCGCCTGCCGCTGCTGCCACTCGAGGATGCCCGTCAGCA
GCTTAATGTACTTAATGGCCGAGCGCAGGATCTCGTTCTTCGATAGCTTC
TTGTCCGGCGGATGTGTGGGCACCAGCTTGCGCAGCTCTGCAAAGGCACC
GGACACGTTCTGCTGGCGCCATCGCTCCCTTGTGTTGGTGAACACCTTGC
GCACACCGCCGGTGGCTCCTACGCCGCTGCCGCCGCCACTGGATGCATTG
CCGCCGGAGCCATTGCCTCCACCACCGCCGCTACCGCCGACTGAGCTTCC
GGAGCTGGCCGGCGCGGTCAGCAGTCCGTTGCGGGAGTGACTGCGCGGCG
AACTGGACAGTGAGCGATTCGCATCCGCCTGGTTGCCATT
BO05044.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2655-PA | 1131 | HLH3B-RA | 307..1128 | 840..19 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HLH3B-RA | 1428 | CG2655-RA | 372..1193 | 840..19 | 4110 | 100 | Minus |
HLH4C-RB | 1424 | CG3052-RB | 563..632 | 596..527 | 230 | 88.6 | Minus |
HLH4C-RA | 1424 | CG3052-RA | 563..632 | 596..527 | 230 | 88.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2680434..2681237 | 19..822 | 4020 | 100 | Plus |
X | 23542271 | X | 4645919..4645988 | 527..596 | 230 | 88.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:28:41 has no hits.
BO05044.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:03 Download gff for
BO05044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-PA | 307..1131 | 18..840 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:03 Download gff for
BO05044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2655-PA | 307..1131 | 18..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:52:13 Download gff for
BO05044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 372..1193 | 19..840 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:10 Download gff for
BO05044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 372..1193 | 19..840 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:10 Download gff for
BO05044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2680434..2681236 | 19..821 | 100 | <- | Plus |
X | 2681334..2681352 | 822..840 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:52:13 Download gff for
BO05044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2574467..2575269 | 19..821 | 100 | <- | Plus |
arm_X | 2575367..2575385 | 822..840 | 100 | | Plus |
BO05044.5prime Sequence
868 bp (720 high quality bases) assembled on 2005-12-02
> BO05044.5prime
GAAGTTATCAGTCGACATGGCCTGGCTACCGAGCAGCTCGAACGGAGCGG
ATAACGCGGACGAACGGAGCACCGCCTCGAGCGGATCCTCCGGCCACAGC
CAGACCAACGAGTCACCGCGATCCGGGCACCTGAACGGTAATGGTAGCAT
GCGGGACACTGCCGCTGGCAGGCATCCGCCCGCCCTGCTCCGACATGCCA
CGCCCCACCTGCAGCCCAAGACGGAGTCCATATCCGATGGAGACGGTGAC
GCGGAGCTTTCCGACTTCTCGCTCAACGACACGGAGGAGGACGAGGAGGA
TCTTCGCGATTACATCGTTCTGAATGGCAACCAGGCGGATGCGAATCGCT
CACTGTCCAGTTCGCCGCGCAGTCACTCCCGCAACGGACTGCTGACCGCG
CCGGCCAGCTCCGGAAGCTCAGTCGGCGGTAGCGGCGGTGGTGGAGGCAA
TGGCTCCGGCGGCAATGCATCCAGTGGCGGCGGCAGCGGCGTAGGAGCCA
CCGGCGGTGTGCGCAAGGTGTTCACCAACACAAGGGAGCGATGGCGCCAG
CAGAACGTGTCCGGTGCCTTTGCAGAGCTGCGCAAGCTGGTGCCCACACA
TCCGCCGGACAAGAAGCTATCGAAGAACGAGATCCTGCGCTCGGCCATTA
AGTACATTAAGCTGCTGACGGGCATCCTCGAGTGGCAGCAGCGGCAGGCG
CCCTCGCATCCGATCAGGGCTCAAATGGAGCCGAACAACAACGACAATAG
GATGGCCAATGGCCATGCGGCGGACGGGGAGAATCTGGAGAATCCAGATG
TTCCGCCTGTACGGCACATCAAGTGTGAACGCACCGACGGGCAGATGCAC
AGGAATGGGCATTGGGCA
BO05044.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2655-PA | 1131 | HLH3B-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HLH3B-RA | 1428 | CG2655-RA | 66..916 | 17..868 | 4235 | 99.9 | Plus |
HLH4C-RB | 1424 | CG3052-RB | 563..632 | 567..636 | 230 | 88.6 | Plus |
HLH4C-RA | 1424 | CG3052-RA | 563..632 | 567..636 | 230 | 88.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2680720..2681237 | 858..341 | 2590 | 100 | Minus |
X | 23542271 | X | 2681334..2681658 | 341..17 | 1625 | 100 | Minus |
X | 23542271 | X | 4645919..4645988 | 636..567 | 230 | 88.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:42:00 has no hits.
BO05044.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:03 Download gff for
BO05044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-PA | 1..850 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:04 Download gff for
BO05044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2655-PA | 1..850 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:30 Download gff for
BO05044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 57..915 | 7..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:55 Download gff for
BO05044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 57..915 | 7..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:55 Download gff for
BO05044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2680712..2681236 | 342..867 | 99 | <- | Minus |
X | 2681334..2681667 | 7..341 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:30 Download gff for
BO05044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2574745..2575269 | 342..867 | 99 | <- | Minus |
arm_X | 2575367..2575700 | 7..341 | 98 | | Minus |
BO05044.complete Sequence
1162 bp (1162 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629954
> BO05044.complete
GAAGTTATCAGTCGACATGGCCTGGCTACCGAGCAGCTCGAACGGAGCGG
ATAACGCGGACGAACGGAGCACCGCCTCGAGCGGATCCTCCGGCCACAGC
CAGACCAACGAGTCACCGCGATCCGGGCACCTGAACGGTAATGGTAGCAT
GCGGGACACTGCCGCTGGCAGGCATCCGCCCGCCCTGCTCCGACATGCCA
CGCCCCACCTGCAGCCCAAGACGGAGTCCATATCCGATGGAGACGGTGAC
GCGGAGCTTTCCGACTTCTCGCTCAACGACACGGAGGAGGACGAGGAGGA
TCTTCGCGATTACATCGTTCTGAATGGCAACCAGGCGGATGCGAATCGCT
CACTGTCCAGTTCGCCGCGCAGTCACTCCCGCAACGGACTGCTGACCGCG
CCGGCCAGCTCCGGAAGCTCAGTCGGCGGTAGCGGCGGTGGTGGAGGCAA
TGGCTCCGGCGGCAATGCATCCAGTGGCGGCGGCAGCGGCGTAGGAGCCA
CCGGCGGTGTGCGCAAGGTGTTCACCAACACAAGGGAGCGATGGCGCCAG
CAGAACGTGTCCGGTGCCTTTGCAGAGCTGCGCAAGCTGGTGCCCACACA
TCCGCCGGACAAGAAGCTATCGAAGAACGAGATCCTGCGCTCGGCCATTA
AGTACATTAAGCTGCTGACGGGCATCCTCGAGTGGCAGCAGCGGCAGGCG
CCCTCGCATCCGATCAGGGCTCAAATGGAGCCGAACAACAACGACAATAG
GATGGCCAATGGCCATGCGGCGGACGGGGAGAATCTGGAGAATCCAGATG
TTCCGCCTGTACGGCACATCAAGTGTGAACGCACCGACGGGCAGATGCAC
AGGAATGGCATTGGGCACGGACATGCCAACGGAAACGCTGGCAACGACCT
GCTGATGATTGCCCCGGGAGCCGTTGTCAAAAGCGAGCTTCTCCTGGAGT
CTACACTCCCACTTGGGCATCCGTTAAACGGCCCACCCCTGCCGTTGACC
ACTGCTCCGCTGGCCATGGCCGAGACTCAGCGAATCAGTGGCACCGTATC
CGGTGTAAAATCGGCCAGCGGACGGAGTAGCAAGCGACGCCTCAAGCCGG
AAGGCGGAGCCACCGATCTCAGTCTGGGCAAACGGCGCAGGACGGCAAGC
TTTCTAGACCAT
BO05044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HLH3B-RA | 1131 | CG2655-PA | 1..1128 | 17..1144 | 5640 | 100 | Plus |
HLH4C-RB | 576 | CG3052-PB | 380..449 | 567..636 | 230 | 88.6 | Plus |
HLH4C-RA | 504 | CG3052-PA | 380..449 | 567..636 | 230 | 88.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HLH3B-RA | 1428 | CG2655-RA | 66..1193 | 17..1144 | 5640 | 100 | Plus |
HLH4C-RB | 1424 | CG3052-RB | 563..632 | 567..636 | 230 | 88.6 | Plus |
HLH4C-RA | 1424 | CG3052-RA | 563..632 | 567..636 | 230 | 88.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2680434..2681237 | 1144..341 | 4020 | 100 | Minus |
X | 23542271 | X | 2681334..2681658 | 341..17 | 1625 | 100 | Minus |
X | 23542271 | X | 4645919..4645988 | 636..567 | 230 | 88.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:53:45 has no hits.
BO05044.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:44 Download gff for
BO05044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 1..1131 | 17..1145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:52 Download gff for
BO05044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 57..1193 | 7..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:56 Download gff for
BO05044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 66..1193 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:44 Download gff for
BO05044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 57..1193 | 7..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:25 Download gff for
BO05044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 66..1193 | 17..1146 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:25 Download gff for
BO05044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2681334..2681658 | 17..341 | 100 | | Minus |
X | 2680432..2681236 | 342..1146 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:56 Download gff for
BO05044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2574465..2575269 | 342..1146 | 99 | <- | Minus |
arm_X | 2575367..2575691 | 17..341 | 100 | | Minus |
BO05044.pep Sequence
Translation from 16 to 1162
> BO05044.pep
MAWLPSSSNGADNADERSTASSGSSGHSQTNESPRSGHLNGNGSMRDTAA
GRHPPALLRHATPHLQPKTESISDGDGDAELSDFSLNDTEEDEEDLRDYI
VLNGNQADANRSLSSSPRSHSRNGLLTAPASSGSSVGGSGGGGGNGSGGN
ASSGGGSGVGATGGVRKVFTNTRERWRQQNVSGAFAELRKLVPTHPPDKK
LSKNEILRSAIKYIKLLTGILEWQQRQAPSHPIRAQMEPNNNDNRMANGH
AADGENLENPDVPPVRHIKCERTDGQMHRNGIGHGHANGNAGNDLLMIAP
GAVVKSELLLESTLPLGHPLNGPPLPLTTAPLAMAETQRISGTVSGVKSA
SGRSSKRRLKPEGGATDLSLGKRRRTASFLDH
BO05044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HLH3B-PA | 376 | CG2655-PA | 1..376 | 1..376 | 1961 | 100 | Plus |
Fer2-PE | 273 | CG5952-PE | 105..205 | 134..222 | 153 | 41.6 | Plus |
Fer2-PB | 274 | CG5952-PB | 105..205 | 134..222 | 153 | 41.6 | Plus |