Clone BO05046 Report

Search the DGRC for BO05046

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG30417-RA
Protein status:BO05046.pep: validated full length
Sequenced Size:838

Clone Sequence Records

BO05046.3prime Sequence

836 bp (790 high quality bases) assembled on 2005-12-02

> BO05046.3prime
ATGGTCTAGAAAGCTTGCATTATATTTGGGCTTGGTGCGGGCCACTCTTT
TGCCGGTGAACCCCTTGCTGGCCAAATAATCACGGATGCCGCGTTTGGTG
TGCACCTTCAGTTTGCAGATGTCGAACTCCAGCTCCTTGTTGCAGTACTC
GGCGCCCTCCATGCGTTGAATGAAATGGATGACGTGGAGCAGCACCTCGC
CGTCCAGCTGCTGAATCTTGGCGTGCAGATCAAGGTCCTCCTCGGTTGTA
AAGGGCTCCTGCTGCTCCGAAGTTTCCAAAGTTGCCGGCGGAGTCCAATC
GGGGGTCGGAGTACATTCGGTGGTTGGAGTACATGAGGGGGGCGCACCCA
TTATGGAGGGGGACACCTCCGAGCCGTTCACCTCGTCCTCCGGCGATGAT
GAGTCCGATTCATCCGAGGAGCTCTCTTCCTCGGCACGCACTTTACTGCC
GCTGGAGCAGATGTAGAGCTGCACCTGGGAGTACATCTCCTCAAAGATGA
TCTGCAGCTGTTTGGCCATGTGGTAGCACAGGTGATCGGGATTCGTGTAC
AGATAGGTGTTGTAGAAAATCAGCCTTATGTCTTTGGCGAAATCCGCGGC
ACTGAGATAGCAACCCGTATTCAAACGATGCCTCACGGTGGACAGATCCA
TGGGTTCCCGGACAATCTCATGGTAATCGTGGAGGCCCAGCAGTTGCGGA
TCCAGTGGCTCGTAGAAAACCCAAGCAATATTCTTATAGGTACTGGAAAA
CAACCTTTTAATAATCACCTTGCAGGCATTAATTTCCGGCGAGGACCGTT
CAGTTTCTTGTTTTGCAGCCATGTCGACTGATAACT

BO05046.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-PA 807 CG30417-RA 1..804 822..19 4020 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-RA 843 CG30417-RA 26..829 822..19 4020 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23326753..23327556 19..822 4020 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:31:49 has no hits.

BO05046.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:06 Download gff for BO05046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-PA 1..807 16..822 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:09 Download gff for BO05046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-PA 1..807 16..822 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:08:55 Download gff for BO05046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 20..837 9..831 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:20:24 Download gff for BO05046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 20..837 9..831 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:20:24 Download gff for BO05046.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23326745..23327562 9..831 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:08:55 Download gff for BO05046.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19214268..19215085 9..831 99   Plus

BO05046.5prime Sequence

836 bp (793 high quality bases) assembled on 2005-12-02

> BO05046.5prime
GAAGTTATCAGTCGACATGGCTGCAAAACAAGAAACTGAACGGTCCTCGC
CGGAAATTAATGCCTGCAAGGTGATTATTAAAAGGTTGTTTTCCAGTACC
TATAAGAATATTGCTTGGGTTTTCTACGAGCCACTGGATCCGCAACTGCT
GGGCCTCCACGATTACCATGAGATTGTCCGGGAACCCATGGATCTGTCCA
CCGTGAGGCATCGTTTGAATACGGGTTGCTATCTCAGTGCCGCGGATTTC
GCCAAAGACATAAGGCTGATTTTCTACAACACCTATCTGTACACGAATCC
CGATCACCTGTGCTACCACATGGCCAAACAGCTGCAGATCATCTTTGAGG
AGATGTACTCCCAGGTGCAGCTCTACATCTGCTCCAGCGGCAGTAAAGTG
CGTGCCGAGGAAGAGAGCTCCTCGGATGAATCGGACTCATCATCGCCGGA
GGACGAGGTGAACGGCTCGGAGGTGTCCCCCTCCATAATGGGTGCGCCCC
CCTCATGTACTCCAACCACCGAATGTACTCCGACCCCCGATTGGACTCCG
CCGGCAACTTTGGAAACTTCGGAGCAGCAGGAGCCCTTTACAACCGAGGA
GGACCTTGATCTGCACGCCAAGATTCAGCAGCTGGACGGCGAGGTGCTGC
TCCACGTCATCCATTTCATTCAACGCATGGAGGGCGCCGAGTACTGCAAC
AAGGAGCTGGAGTTCGACATCTGCAAACTGAAGGTGCACACCAAACGCGG
CATCCGTGATTATTTGGCCAGCAAGGGGTTCACCGGCAAAAGAGTGGCCC
GCACCAAGCCCAAATATAATGCAAGCTTTCTAGACC

BO05046.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-PA 807 CG30417-RA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-RA 843 CG30417-RA 26..829 17..820 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23326753..23327556 820..17 4020 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:42:22 has no hits.

BO05046.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:07 Download gff for BO05046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:10 Download gff for BO05046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:33 Download gff for BO05046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 20..837 8..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:25 Download gff for BO05046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 20..837 8..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:25 Download gff for BO05046.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23326745..23327562 8..830 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:33 Download gff for BO05046.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19214268..19215085 8..830 99   Minus

BO05046.complete Sequence

838 bp (838 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629956

> BO05046.complete
GAAGTTATCAGTCGACATGGCTGCAAAACAAGAAACTGAACGGTCCTCGC
CGGAAATTAATGCCTGCAAGGTGATTATTAAAAGGTTGTTTTCCAGTACC
TATAAGAATATTGCTTGGGTTTTCTACGAGCCACTGGATCCGCAACTGCT
GGGCCTCCACGATTACCATGAGATTGTCCGGGAACCCATGGATCTGTCCA
CCGTGAGGCATCGTTTGAATACGGGTTGCTATCTCAGTGCCGCGGATTTC
GCCAAAGACATAAGGCTGATTTTCTACAACACCTATCTGTACACGAATCC
CGATCACCTGTGCTACCACATGGCCAAACAGCTGCAGATCATCTTTGAGG
AGATGTACTCCCAGGTGCAGCTCTACATCTGCTCCAGCGGCAGTAAAGTG
CGTGCCGAGGAAGAGAGCTCCTCGGATGAATCGGACTCATCATCGCCGGA
GGACGAGGTGAACGGCTCGGAGGTGTCCCCCTCCATAATGGGTGCGCCCC
CCTCATGTACTCCAACCACCGAATGTACTCCGACCCCCGATTGGACTCCG
CCGGCAACTTTGGAAACTTCGGAGCAGCAGGAGCCCTTTACAACCGAGGA
GGACCTTGATCTGCACGCCAAGATTCAGCAGCTGGACGGCGAGGTGCTGC
TCCACGTCATCCATTTCATTCAACGCATGGAGGGCGCCGAGTACTGCAAC
AAGGAGCTGGAGTTCGACATCTGCAAACTGAAGGTGCACACCAAACGCGG
CATCCGTGATTATTTGGCCAGCAAGGGGTTCACCGGCAAAAGAGTGGCCC
GCACCAAGCCCAAATATAATGCAAGCTTTCTAGACCAT

BO05046.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-RA 807 CG30417-PA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-RA 843 CG30417-RA 26..829 17..820 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23326753..23327556 820..17 4020 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:24:24 has no hits.

BO05046.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:29 Download gff for BO05046.complete
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:28 Download gff for BO05046.complete
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:16 Download gff for BO05046.complete
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 26..829 17..822 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:29 Download gff for BO05046.complete
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:59 Download gff for BO05046.complete
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 26..829 17..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:59 Download gff for BO05046.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23326750..23327556 17..822 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:16 Download gff for BO05046.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19214273..19215079 17..822 99   Minus

BO05046.pep Sequence

Translation from 16 to 838

> BO05046.pep
MAAKQETERSSPEINACKVIIKRLFSSTYKNIAWVFYEPLDPQLLGLHDY
HEIVREPMDLSTVRHRLNTGCYLSAADFAKDIRLIFYNTYLYTNPDHLCY
HMAKQLQIIFEEMYSQVQLYICSSGSKVRAEEESSSDESDSSSPEDEVNG
SEVSPSIMGAPPSCTPTTECTPTPDWTPPATLETSEQQEPFTTEEDLDLH
AKIQQLDGEVLLHVIHFIQRMEGAEYCNKELEFDICKLKVHTKRGIRDYL
ASKGFTGKRVARTKPKYNASFLDH

BO05046.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-PA 268 CG30417-PA 1..268 1..268 1423 100 Plus
fs(1)h-PH 1105 CG2252-PH 463..579 1..117 290 43.6 Plus
fs(1)h-PF 1110 CG2252-PF 468..584 1..117 290 43.6 Plus
fs(1)h-PE 1110 CG2252-PE 468..584 1..117 290 43.6 Plus
fs(1)h-PD 1110 CG2252-PD 468..584 1..117 290 43.6 Plus
fs(1)h-PH 1105 CG2252-PH 30..133 8..110 178 33.7 Plus
fs(1)h-PF 1110 CG2252-PF 30..133 8..110 178 33.7 Plus
fs(1)h-PE 1110 CG2252-PE 30..133 8..110 178 33.7 Plus