Clone Sequence Records
BO05049.3prime Sequence
533 bp (532 high quality bases) assembled on 2005-12-02
> BO05049.3prime
ATGGTCTAGAAAGCTTGCGGGCGTCTCCAGCACATGATTCAAATAGGCAA
TGTAGCAGATGGCCAGCTTGAGGATCTCGATCTTGGAAAGCTTCTTGTCC
GGCGGCAATGTGGGCAACAGCTTGCGCAGCTCGGCAAAGGAAACATTGAA
TGCCTCCACCCGTATACGCTCCCGCGTCGCATGTGCCGTTCGGTATTTGA
GTGTCGCTCGCCTGCGACGACGCCGCTCCTCCCGCGATAGACCCACCAAT
TCCGATGGATCCAAATGGGCAATGGGCGTGGTCCGGCGACGTGGCGCCGG
CGTGGGCGGCGGTGGCGGTGCCGGTTGTGCGGCCGTTTCGCACGCCATTC
GCGCCTGAAAACGCTTATCGATATCCAGCGTCGTACTGGCCGCATAGTCC
TCGTTGACCAGATGCGGATTATTTGGCCCAATCATCTCATCATCGTCGAC
CAGATAGTAGCGACTAAGCGAAATGCTTTGCGGCGGACCCGCCGCCATAT
GGCTCATATCGTAGACCATGTCGACTGATAACT
BO05049.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3052-PA | 504 | HLH4C-RA | 1..501 | 519..19 | 2505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH4C-RB | 1424 | CG3052-RB | 184..684 | 519..19 | 2505 | 100 | Minus |
| HLH4C-RA | 1424 | CG3052-RA | 184..684 | 519..19 | 2505 | 100 | Minus |
| HLH3B-RA | 1428 | CG2655-RA | 616..685 | 140..71 | 230 | 88.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4645867..4646367 | 19..519 | 2505 | 100 | Plus |
| X | 23542271 | X | 2680942..2681011 | 71..140 | 230 | 88.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:27:56 has no hits.
BO05049.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:10 Download gff for
BO05049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH4C-PA | 1..504 | 16..519 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:14 Download gff for
BO05049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3052-PA | 1..504 | 16..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:30 Download gff for
BO05049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH4C-RA | 178..684 | 19..527 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:52:45 Download gff for
BO05049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH4C-RA | 178..684 | 19..527 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:52:45 Download gff for
BO05049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4645867..4646373 | 19..527 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:30 Download gff for
BO05049.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4539900..4540406 | 19..527 | 99 | | Plus |
BO05049.5prime Sequence
533 bp (532 high quality bases) assembled on 2005-12-02
> BO05049.5prime
GAAGTTATCAGTCGACATGGTCTACGATATGAGCCATATGGCGGCGGGTC
CGCCGCAAAGCATTTCGCTTAGTCGCTACTATCTGGTCGACGATGATGAG
ATGATTGGGCCAAATAATCCGCATCTGGTCAACGAGGACTATGCGGCCAG
TACGACGCTGGATATCGATAAGCGTTTTCAGGCGCGAATGGCGTGCGAAA
CGGCCGCACAACCGGCACCGCCACCGCCGCCCACGCCGGCGCCACGTCGC
CGGACCACGCCCATTGCCCATTTGGATCCATCGGAATTGGTGGGTCTATC
GCGGGAGGAGCGGCGTCGTCGCAGGCGAGCGACACTCAAATACCGAACGG
CACATGCGACGCGGGAGCGTATACGGGTGGAGGCATTCAATGTTTCCTTT
GCCGAGCTGCGCAAGCTGTTGCCCACATTGCCGCCGGACAAGAAGCTTTC
CAAGATCGAGATCCTCAAGCTGGCCATCTGCTACATTGCCTATTTGAATC
ATGTGCTGGAGACGCCCGCAAGCTTTCTAGACC
BO05049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3052-PA | 504 | HLH4C-RA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:43:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH4C-RB | 1424 | CG3052-RB | 184..684 | 17..517 | 2505 | 100 | Plus |
| HLH4C-RA | 1424 | CG3052-RA | 184..684 | 17..517 | 2505 | 100 | Plus |
| HLH3B-RA | 1428 | CG2655-RA | 616..685 | 396..465 | 230 | 88.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:43:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4645867..4646367 | 517..17 | 2505 | 100 | Minus |
| X | 23542271 | X | 2680942..2681011 | 465..396 | 230 | 88.6 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:43:47 has no hits.
BO05049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:11 Download gff for
BO05049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH4C-PA | 1..504 | 17..520 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:15 Download gff for
BO05049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3052-PA | 1..504 | 17..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:32 Download gff for
BO05049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH4C-RA | 178..684 | 9..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:10 Download gff for
BO05049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH4C-RA | 178..684 | 9..517 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:10 Download gff for
BO05049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4645867..4646373 | 9..517 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:32 Download gff for
BO05049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4539900..4540406 | 9..517 | 99 | | Minus |
BO05049.complete Sequence
535 bp (535 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629957
> BO05049.complete
GAAGTTATCAGTCGACATGGTCTACGATATGAGCCATATGGCGGCGGGTC
CGCCGCAAAGCATTTCGCTTAGTCGCTACTATCTGGTCGACGATGATGAG
ATGATTGGGCCAAATAATCCGCATCTGGTCAACGAGGACTATGCGGCCAG
TACGACGCTGGATATCGATAAGCGTTTTCAGGCGCGAATGGCGTGCGAAA
CGGCCGCACAACCGGCACCGCCACCGCCGCCCACGCCGGCGCCACGTCGC
CGGACCACGCCCATTGCCCATTTGGATCCATCGGAATTGGTGGGTCTATC
GCGGGAGGAGCGGCGTCGTCGCAGGCGAGCGACACTCAAATACCGAACGG
CACATGCGACGCGGGAGCGTATACGGGTGGAGGCATTCAATGTTTCCTTT
GCCGAGCTGCGCAAGCTGTTGCCCACATTGCCGCCGGACAAGAAGCTTTC
CAAGATCGAGATCCTCAAGCTGGCCATCTGCTACATTGCCTATTTGAATC
ATGTGCTGGAGACGCCCGCAAGCTTTCTAGACCAT
BO05049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH4C-RB | 576 | CG3052-PB | 1..501 | 17..517 | 2505 | 100 | Plus |
| HLH4C-RA | 504 | CG3052-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
| HLH3B-RA | 1131 | CG2655-PA | 551..620 | 396..465 | 230 | 88.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH4C-RB | 1424 | CG3052-RB | 184..684 | 17..517 | 2505 | 100 | Plus |
| HLH4C-RA | 1424 | CG3052-RA | 184..684 | 17..517 | 2505 | 100 | Plus |
| HLH3B-RA | 1428 | CG2655-RA | 616..685 | 396..465 | 230 | 88.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4645867..4646367 | 517..17 | 2505 | 100 | Minus |
| X | 23542271 | X | 2680942..2681011 | 465..396 | 230 | 88.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:19:26 has no hits.
BO05049.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:16 Download gff for
BO05049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH4C-RA | 1..504 | 17..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:30 Download gff for
BO05049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH4C-RA | 178..684 | 9..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:57 Download gff for
BO05049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH4C-RA | 184..684 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:16 Download gff for
BO05049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH4C-RA | 178..684 | 9..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:48 Download gff for
BO05049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH4C-RA | 184..684 | 17..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:48 Download gff for
BO05049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4645864..4646367 | 17..519 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:57 Download gff for
BO05049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4539897..4540400 | 17..519 | 99 | | Minus |
BO05049.pep Sequence
Translation from 16 to 535
> BO05049.pep
MVYDMSHMAAGPPQSISLSRYYLVDDDEMIGPNNPHLVNEDYAASTTLDI
DKRFQARMACETAAQPAPPPPPTPAPRRRTTPIAHLDPSELVGLSREERR
RRRRATLKYRTAHATRERIRVEAFNVSFAELRKLLPTLPPDKKLSKIEIL
KLAICYIAYLNHVLETPASFLDH
BO05049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH4C-PA | 167 | CG3052-PA | 1..167 | 1..167 | 868 | 100 | Plus |
| HLH4C-PB | 191 | CG3052-PB | 1..167 | 1..167 | 868 | 100 | Plus |
| Fer3-PA | 195 | CG6913-PA | 24..148 | 65..169 | 144 | 35.2 | Plus |
