Clone Sequence Records
BO05052.3prime Sequence
864 bp (829 high quality bases) assembled on 2005-12-02
> BO05052.3prime
ATGGTCTAGAAAGCTTGCGCCAGCCTTGTGAGTCTTCAAGTGGTGCTGGT
ATTCTTTGTAGCTGTTGCTCTTAAATATTTCACCGGCTTCTTCATCGGAG
CACTTAGCGCAGTGGTAAATGAACATGCCGGGATGCTTTCCCGTCTTGAT
GATGTGCTTACGTAGGTTATCTATGGTGCTGCACTGGAAGTCGCAGTGGG
GGCATTGGTGGGGCTTCTGGCCCGAGTGGCGCAACGAGTGCCGACGGAGG
TGACCCTTGATGCGGGCTCTGAAATCGCATTGATCGCACGAAAACCACTC
CTCACCATTCTTCTCCGTGGAATGAGCCGACTTGAGGTGCCTTTTTAGGT
GCAGCTCGCTCTTTCCCACATAGCTGCAGTTAATCCGCGCACATTTGTGA
TTTTCCTGGGAGTGGGAGACCAAGTGGGTTTTCAGGCTTTCCGGGGTTCG
CCCTGCATATGAGCAGTCCGCAAAATGGCAGAGATAATTGCGCTCAACTG
CCTTCGAGTGGCTAATCTCATGAAGTTTAAGGGAATACTTTTTGGCCAGT
AATTTTCCACATGTCCCACACTGATATTTGGGTTTTGATTGTTCAACATC
TTTCGCAGCATATTTTTTCTTCTCCTTGTCGCCTACTTTGGCATGCTTTG
TGATTACGTGGTTCTTAAGGTTGTGTCTTCTAGCAAATTTCTGAAGGCAC
TCAGTGCATTCAAAAATTTTTTCATTTGTATGGTTCCTTAGGTGAGCCCT
AAGCGAGTGCTTTTTGAAATTCTTCGGGCACAAAGGGCACTGAAGAACCT
CGTTTTTCCCTATTGTTCCGGATCGTGTGTGAAAAATGCGGTGATAAACT
AGATCGGACTCATA
BO05052.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31612-PA | 2964 | CG31612-RA | 2116..2961 | 864..19 | 4230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31612-RB | 3433 | CG31612-RB | 2324..3169 | 864..19 | 4230 | 100 | Minus |
| CG31612-RA | 3285 | CG31612-RA | 2176..3021 | 864..19 | 4230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21772998..21773325 | 537..864 | 1640 | 100 | Plus |
| 2L | 23513712 | 2L | 21762578..21762901 | 19..342 | 1620 | 100 | Plus |
| 2L | 23513712 | 2L | 21765962..21766160 | 340..538 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:30:24 has no hits.
BO05052.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:13 Download gff for
BO05052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31612-PA | 2117..2964 | 16..863 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:19 Download gff for
BO05052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31612-PA | 2117..2964 | 16..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:52:20 Download gff for
BO05052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31612-RA | 2177..3021 | 19..863 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:25 Download gff for
BO05052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31612-RA | 2177..3021 | 19..863 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:25 Download gff for
BO05052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21762578..21762899 | 19..340 | 100 | <- | Plus |
| 2L | 21765963..21766160 | 341..538 | 100 | <- | Plus |
| 2L | 21773000..21773324 | 539..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:52:20 Download gff for
BO05052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21762578..21762899 | 19..340 | 100 | <- | Plus |
| arm_2L | 21765963..21766160 | 341..538 | 100 | <- | Plus |
| arm_2L | 21773000..21773324 | 539..863 | 100 | | Plus |
BO05052.5prime Sequence
860 bp (805 high quality bases) assembled on 2005-12-02
> BO05052.5prime
GAAGTTATCAGTCGACATGAACGAAGACCATCTCGAGGACACTCATCTGT
GCATCAGGTGCAACGCAACTATACTTGGACTCTCAAAATATATTGATCAT
CGAAAACGGAACTGTCTTATAACAGGAAAGCAAAATGCTTCGCCAAAAAC
CGATGGACGAACAAGAATCTCTGCTGACACTCATGTTTCGGCGACGCTTA
TCAGTAGCAGTAATTTGGATCATTCATATGATGGCTTCCATTTCACTGAA
CCGGAGGCTCCAAGTAGTTACCTTCGCAAAACTGCCGCCAGTCATGGCGG
TAAGACCTCAAAGTCCTTGACTGAAGCCTATGATCTCCCATACGAACTTG
GAGCCGATCTCTTCTTTTCGTCCCTACAACTGCAGAGCGTCGCCACGGGT
GGGAAAATAGGATCGGTACCCCGTCAAGAGCGAAGCAAAGATGAGTCCTG
GTCCGCGCCAGCTGGCGATCCCCTACTGAAAGCAGTGAGGGAGAACGATG
AAACTGTCTTTAAGCCGCTTCACTTTGACCATGAGTACCCAGAAGCGAGT
GATGAGGAGGATGATGAGGATGAACACGAGGAATTTGATGCGGAAGAAGA
TGAGGAAGAGTACGATGCAAGGCGTCACTCACCGCCCATTGTGCCCGCCA
GTCACACAGGTGGTAAGTGGAAACCAGAACAGCGGCCGCAGCTACGACAT
CCGCATATAGAACGCCTCTCGCCAAGTTGGGATGAGCCCCCCGAAGAAAA
CTACACTCACCCTCCAGCGGACCATACCAAGGGCAAATGGGTTCCGGGTA
GCAAGCAGTTGGAGTACCGCGAAAATTTGGATCTTACCAAGCTGGGACCA
CCGGGAGCTA
BO05052.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31612-PA | 2964 | CG31612-RA | 1..829 | 17..845 | 4120 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31612-RB | 3433 | CG31612-RB | 208..1052 | 16..860 | 4165 | 99.6 | Plus |
| CG31612-RA | 3285 | CG31612-RA | 60..904 | 16..860 | 4165 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21774597..21775441 | 860..16 | 4165 | 99.5 | Minus |
Blast to na_te.dros performed 2015-02-04 19:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cr1a | 4470 | Cr1a DMCR1A 4470bp | 1424..1459 | 619..584 | 108 | 77.8 | Minus |
BO05052.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:14 Download gff for
BO05052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31612-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:21 Download gff for
BO05052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31612-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:18:42 Download gff for
BO05052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31612-RA | 60..903 | 16..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:37:56 Download gff for
BO05052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31612-RA | 60..903 | 16..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:37:56 Download gff for
BO05052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21774598..21775449 | 9..859 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:18:42 Download gff for
BO05052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21774598..21775449 | 9..859 | 99 | | Minus |
BO05052.complete Sequence
2995 bp assembled on 2008-08-14
GenBank Submission: FJ629959
> BO05052.complete
GAAGTTATCAGTCGACATGAACGAAGACCATCTCGAGGACACTCATCTGT
GCATCAGGTGCAACGCAACTATACTTGGACTCTCAAAATATATTGATCAT
CGAAAACGGAACTGTCTTATAACAGGAAAGCAAAATGCTTCGCCAAAAAC
CGATGGACGAACAAGAATCTCTGCTGACACTCATGTTTCGGCGACGCTTA
TCAGTAGCAGTAATTTGGATCATTCATATGATGGCTTCCATTTCACTGAA
CCGGAGGCTCCAAGTAGTTACCTTCGCAAAACTGCCGCCAGTCATGGCGG
TAAGACCTCAAAGTCCTTGACTGAAGCCTATGATCTCCCATACGAACTTG
GAGCCGATCTCTTCTTTTCGTCCCTACAACTGCAGAGCGTCGCCACGGGT
GGGAAAATAGGATCGGTACCCCGTCAAGAGCGAAGCAAAGATGAGTCCTG
GTCCGCGCCAGCTGGCGATCCCCTACTGAAAGCAGTGAGGGAGAACGATG
AAACTGTCTTTAAGCCGCTTCACTTTGACCATGAGTACCCAGAAGCGAGT
GATGAGGAGGATGATGAGGATGAACACGAGGAATTTGATGCGGAAGAAGA
TGAGGAAGAGTACGATGCAAGGCGTCACTCACCGCCCATTGTGCCCGCCA
GTCACACAGGTGGTAAGTGGAAACCAGAACAGCGGCCGCAGCTACGACAT
CCGCATATAGAACGCCTCTCGCCAAGTTGGGATGAGCCCCCCGAAGAAAA
CTACACTCACCCTCCAGCGGACCATACCAAGGGCAAATGGGTTCCGGGTA
GCAAGCAGTTGGAGTACCGCGAAAATTTGGATCTTACCAAGCTGGACCAA
CCGGGAGCTAGTTATTGGTGCAACATTTGCTGCAGGCGGCTGAAAAGTCG
CTTATATTATAACCAACATTTGAGGAGTGGCTATCACATCAAAAGAGCTG
AAGCAGAGTGCGAATTAGAGCAGGCTACTCTGGGCAGGGAACTTACCCTA
AGCAAGGACTTCTCAATAAAAGACGATGCGGACAAAAATGAACCAAAGCC
ACCGAAACGACAGAGGAGAGCAAATCTTCTGCGATGCGATCTATGCCGGC
ACACAATGGCAAGGCATTTGATTGGCAAACATTTAATTTCCCATTATCAT
TTCAGAAGACTCCAACAGCAGAGTCGAATTAGAAGACAAGCTTGCTTGCA
GGAAATACTTAAGCACATGGGAAGCATAGTGAGGCAATCTCCATTTCAAT
GCATGCCTTGTCGATTCTATGCCAACACTGAGGAGACCTTTCTTTATCAT
TGGAAATCCCACGAGCACTTGGAGTTGACCAAGAGACTGGGGGGGACTTT
TTGGTGTTCCTTTTGCCAGTTTAACTCGAACACCAATAATTCCATGTTGC
TGCATTTGTTGGATTCCTCCCATAAGGAGGTGCTTTTAGCCCTTAATAGA
TCAGTTCCCATATGTATCGCCCAAAGAAGACGGATCCAGTGCTCTAGGTG
TGGAATGGAATTTTTGTACAACATCCAACTACGTCAACACTCGATCACTG
AGCATCCAGGACTTGCTCTTACAGGGACTGCAGCCGATGAATACCAGAGT
AGGTTTCGATGCAATTTGTGTGGATCCTCACAGAAATCTCGCTTAGCTCT
TCAACGCCATAAAAAGCACAAACACCACTTAGCAAGGTATTTTTGTGCCA
TTTGCCGTTTGGAATTCGACAACTCTTTGGATGCGCGTCGTCATAGAAGC
TTGGTGATACATAAGCAAAAAGCCCGACCCCAAACGTCTATTCCACAACC
CGAAAACGAAATAGAACATATGCTAAGAGAAGTCCTAGAGGAGACAGTTC
CTAGTCCACCCGCCAAAAGAAGTGCGGATGTTAACGCAAAGTGCTCGAAC
AGCAGAAAAACGATTGAATCGTCCCAAAGATTAGCCCAACATCAAGCAGA
AGTTCATTCCTCGGATAATCATTTGTGTTTGAGCTGTGGAATAAGCTTTG
AGTCAGCTCAGGCACTCGGACGACACACCCGCAGCTGTCAACCCCTGGCC
AGCACATCAACCCCCGCTGATCTATCACAAGCTCAAAAGAAATCAATGTA
CTCCTGCGATCAATGTCGCTTCCAATCTCAATATGAGTCCGATCTAGTTT
ATCACCGCATTTTTCACACACGATCCGGAACAATAGGGAAAAACGAGGTT
CTTCAGTGCCCTTTGTGCCCGAAGAATTTCAAAAAGCACTCGCTTAGGGC
TCACCTAAGGAACCATACAAATGAAAAAATTTTTGAATGCACTGAGTGCC
TTCAGAAATTTGCTAGAAGACACAACCTTAAGAACCACGTAATCACAAAG
CATGCCAAAGTAGGCGACAAGGAGAAGAAAAAATATGCTGCGAAAGATGT
TGAACAATCAAAACCCAAATATCAGTGTGGGACATGTGGAAAATTACTGG
CCAAAAAGTATTCCCTTAAACTTCATGAGATTAGCCACTCGAAGGCAGTT
GAGCGCAATTATCTCTGCCATTTTGCGGACTGCTCATATGCAGGGCGAAC
CCCGGAAAGCCTGAAAACCCACTTGGTCTCCCACTCCCAGGAAAATCACA
AATGTGCGCGGATTAACTGCAGCTATGTGGGAAAGAGCGAGCTGCACCTA
AAAAGGCACCTCAAGTCGGCTCATTCCACGGAGAAGAATGGTGAGGAGTG
GTTTTCGTGCGATCAATGCGATTTCAGAGCCCGCATCAAGGGTCACCTCC
GTCGGCACTCGTTGCGCCACTCGGGCCAGAAGCCCCACCAATGCCCCCAC
TGCGACTTCCAGTGCAGCACCATAGATAACCTACGTAAGCACATCATCAA
GACGGGAAAGCATCCCGGCATGTTCATTTACCACTGCGCTAAGTGCTCCG
ATGAAGAAGCCGGTGAAATATTTAAGAGCAACAGCTACAAAGAATACCAG
CACCACTTGAAGACTCACAAGGCTGGCGCAAGCTTTCTAGACCAT
BO05052.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31612-RB | 2964 | CG31612-PB | 1..2961 | 17..2977 | 14790 | 100 | Plus |
| CG31612-RA | 2964 | CG31612-PA | 1..2961 | 17..2977 | 14790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31612-RB | 3433 | CG31612-RB | 208..3169 | 16..2977 | 14795 | 100 | Plus |
| CG31612-RA | 3285 | CG31612-RA | 60..3021 | 16..2977 | 14795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21772998..21775441 | 2459..16 | 12205 | 100 | Minus |
| 2L | 23513712 | 2L | 21762578..21762901 | 2977..2654 | 1620 | 100 | Minus |
| 2L | 23513712 | 2L | 21765962..21766160 | 2656..2458 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:00:58 has no hits.
BO05052.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:42 Download gff for
BO05052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31612-RA | 58..3019 | 16..2977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:46 Download gff for
BO05052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31612-RA | 61..3021 | 17..2979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:36 Download gff for
BO05052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31612-RA | 59..3019 | 17..2979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:58 Download gff for
BO05052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31612-RA | 61..3021 | 17..2979 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:58 Download gff for
BO05052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21762575..21762899 | 2656..2979 | 99 | <- | Minus |
| 2L | 21765963..21766160 | 2458..2655 | 100 | <- | Minus |
| 2L | 21773000..21775440 | 17..2457 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:46 Download gff for
BO05052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21773000..21775440 | 17..2457 | 99 | | Minus |
| arm_2L | 21762575..21762899 | 2656..2979 | 99 | <- | Minus |
| arm_2L | 21765963..21766160 | 2458..2655 | 100 | <- | Minus |
BO05052.pep Sequence
Translation from 16 to 2995
> BO05052.pep
MNEDHLEDTHLCIRCNATILGLSKYIDHRKRNCLITGKQNASPKTDGRTR
ISADTHVSATLISSSNLDHSYDGFHFTEPEAPSSYLRKTAASHGGKTSKS
LTEAYDLPYELGADLFFSSLQLQSVATGGKIGSVPRQERSKDESWSAPAG
DPLLKAVRENDETVFKPLHFDHEYPEASDEEDDEDEHEEFDAEEDEEEYD
ARRHSPPIVPASHTGGKWKPEQRPQLRHPHIERLSPSWDEPPEENYTHPP
ADHTKGKWVPGSKQLEYRENLDLTKLDQPGASYWCNICCRRLKSRLYYNQ
HLRSGYHIKRAEAECELEQATLGRELTLSKDFSIKDDADKNEPKPPKRQR
RANLLRCDLCRHTMARHLIGKHLISHYHFRRLQQQSRIRRQACLQEILKH
MGSIVRQSPFQCMPCRFYANTEETFLYHWKSHEHLELTKRLGGTFWCSFC
QFNSNTNNSMLLHLLDSSHKEVLLALNRSVPICIAQRRRIQCSRCGMEFL
YNIQLRQHSITEHPGLALTGTAADEYQSRFRCNLCGSSQKSRLALQRHKK
HKHHLARYFCAICRLEFDNSLDARRHRSLVIHKQKARPQTSIPQPENEIE
HMLREVLEETVPSPPAKRSADVNAKCSNSRKTIESSQRLAQHQAEVHSSD
NHLCLSCGISFESAQALGRHTRSCQPLASTSTPADLSQAQKKSMYSCDQC
RFQSQYESDLVYHRIFHTRSGTIGKNEVLQCPLCPKNFKKHSLRAHLRNH
TNEKIFECTECLQKFARRHNLKNHVITKHAKVGDKEKKKYAAKDVEQSKP
KYQCGTCGKLLAKKYSLKLHEISHSKAVERNYLCHFADCSYAGRTPESLK
THLVSHSQENHKCARINCSYVGKSELHLKRHLKSAHSTEKNGEEWFSCDQ
CDFRARIKGHLRRHSLRHSGQKPHQCPHCDFQCSTIDNLRKHIIKTGKHP
GMFIYHCAKCSDEEAGEIFKSNSYKEYQHHLKTHKAGASFLDH
BO05052.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31612-PB | 987 | CG31612-PB | 1..987 | 1..987 | 5370 | 100 | Plus |
| CG31612-PA | 987 | CG31612-PA | 1..987 | 1..987 | 5370 | 100 | Plus |
| crol-PF | 907 | CG14938-PF | 223..666 | 492..943 | 297 | 22.7 | Plus |
| CG5245-PA | 501 | CG5245-PA | 63..494 | 391..946 | 293 | 22.9 | Plus |
| crol-PG | 878 | CG14938-PG | 223..637 | 492..943 | 292 | 24.7 | Plus |
| CG5245-PA | 501 | CG5245-PA | 78..310 | 725..961 | 250 | 28.7 | Plus |
| crol-PF | 907 | CG14938-PF | 223..670 | 285..779 | 243 | 23.4 | Plus |
| crol-PF | 907 | CG14938-PF | 223..592 | 626..960 | 220 | 23 | Plus |
| CG5245-PA | 501 | CG5245-PA | 66..243 | 787..984 | 204 | 30.7 | Plus |
| crol-PF | 907 | CG14938-PF | 223..424 | 731..961 | 178 | 26.1 | Plus |
